data_8EGQ
#
_model_server_result.job_id            EhcB6IOh9T7TdJ8nMZsnWw 
_model_server_result.datetime_utc      '2025-06-30 04:24:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8egq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8EGQ 
#
_exptl.entry_id    8EGQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8EGQ 
_cell.length_a            111.267 
_cell.length_b            111.267 
_cell.length_c            140.111 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EGQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8EGQ 
_atom_sites.fract_transf_matrix[1][1]    0.008987 
_atom_sites.fract_transf_matrix[1][2]    0.005189 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010378 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007137 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 401 ADP ADP . 
C 3 WJK A 1 402 402 WJK PFE . 
D 3 WJK A 1 403 403 WJK PFE . 
E 4 SO4 A 1 404 1 SO4 SO4 . 
F 5 HOH A 1 501 193 HOH HOH . 
F 5 HOH A 2 502 42 HOH HOH . 
F 5 HOH A 3 503 78 HOH HOH . 
F 5 HOH A 4 504 116 HOH HOH . 
F 5 HOH A 5 505 100 HOH HOH . 
F 5 HOH A 6 506 136 HOH HOH . 
F 5 HOH A 7 507 28 HOH HOH . 
F 5 HOH A 8 508 50 HOH HOH . 
F 5 HOH A 9 509 12 HOH HOH . 
F 5 HOH A 10 510 34 HOH HOH . 
F 5 HOH A 11 511 107 HOH HOH . 
F 5 HOH A 12 512 2 HOH HOH . 
F 5 HOH A 13 513 52 HOH HOH . 
F 5 HOH A 14 514 192 HOH HOH . 
F 5 HOH A 15 515 11 HOH HOH . 
F 5 HOH A 16 516 156 HOH HOH . 
F 5 HOH A 17 517 41 HOH HOH . 
F 5 HOH A 18 518 74 HOH HOH . 
F 5 HOH A 19 519 108 HOH HOH . 
F 5 HOH A 20 520 84 HOH HOH . 
F 5 HOH A 21 521 24 HOH HOH . 
F 5 HOH A 22 522 47 HOH HOH . 
F 5 HOH A 23 523 94 HOH HOH . 
F 5 HOH A 24 524 64 HOH HOH . 
F 5 HOH A 25 525 67 HOH HOH . 
F 5 HOH A 26 526 35 HOH HOH . 
F 5 HOH A 27 527 184 HOH HOH . 
F 5 HOH A 28 528 14 HOH HOH . 
F 5 HOH A 29 529 73 HOH HOH . 
F 5 HOH A 30 530 3 HOH HOH . 
F 5 HOH A 31 531 132 HOH HOH . 
F 5 HOH A 32 532 21 HOH HOH . 
F 5 HOH A 33 533 69 HOH HOH . 
F 5 HOH A 34 534 99 HOH HOH . 
F 5 HOH A 35 535 10 HOH HOH . 
F 5 HOH A 36 536 1 HOH HOH . 
F 5 HOH A 37 537 7 HOH HOH . 
F 5 HOH A 38 538 164 HOH HOH . 
F 5 HOH A 39 539 15 HOH HOH . 
F 5 HOH A 40 540 6 HOH HOH . 
F 5 HOH A 41 541 65 HOH HOH . 
F 5 HOH A 42 542 20 HOH HOH . 
F 5 HOH A 43 543 118 HOH HOH . 
F 5 HOH A 44 544 39 HOH HOH . 
F 5 HOH A 45 545 43 HOH HOH . 
F 5 HOH A 46 546 8 HOH HOH . 
F 5 HOH A 47 547 13 HOH HOH . 
F 5 HOH A 48 548 194 HOH HOH . 
F 5 HOH A 49 549 79 HOH HOH . 
F 5 HOH A 50 550 55 HOH HOH . 
F 5 HOH A 51 551 71 HOH HOH . 
F 5 HOH A 52 552 91 HOH HOH . 
F 5 HOH A 53 553 139 HOH HOH . 
F 5 HOH A 54 554 103 HOH HOH . 
F 5 HOH A 55 555 18 HOH HOH . 
F 5 HOH A 56 556 22 HOH HOH . 
F 5 HOH A 57 557 26 HOH HOH . 
F 5 HOH A 58 558 137 HOH HOH . 
F 5 HOH A 59 559 120 HOH HOH . 
F 5 HOH A 60 560 85 HOH HOH . 
F 5 HOH A 61 561 101 HOH HOH . 
F 5 HOH A 62 562 56 HOH HOH . 
F 5 HOH A 63 563 77 HOH HOH . 
F 5 HOH A 64 564 61 HOH HOH . 
F 5 HOH A 65 565 146 HOH HOH . 
F 5 HOH A 66 566 44 HOH HOH . 
F 5 HOH A 67 567 157 HOH HOH . 
F 5 HOH A 68 568 48 HOH HOH . 
F 5 HOH A 69 569 31 HOH HOH . 
F 5 HOH A 70 570 82 HOH HOH . 
F 5 HOH A 71 571 54 HOH HOH . 
F 5 HOH A 72 572 93 HOH HOH . 
F 5 HOH A 73 573 186 HOH HOH . 
F 5 HOH A 74 574 27 HOH HOH . 
F 5 HOH A 75 575 105 HOH HOH . 
F 5 HOH A 76 576 109 HOH HOH . 
F 5 HOH A 77 577 160 HOH HOH . 
F 5 HOH A 78 578 191 HOH HOH . 
F 5 HOH A 79 579 40 HOH HOH . 
F 5 HOH A 80 580 49 HOH HOH . 
F 5 HOH A 81 581 17 HOH HOH . 
F 5 HOH A 82 582 19 HOH HOH . 
F 5 HOH A 83 583 130 HOH HOH . 
F 5 HOH A 84 584 96 HOH HOH . 
F 5 HOH A 85 585 29 HOH HOH . 
F 5 HOH A 86 586 80 HOH HOH . 
F 5 HOH A 87 587 154 HOH HOH . 
F 5 HOH A 88 588 57 HOH HOH . 
F 5 HOH A 89 589 131 HOH HOH . 
F 5 HOH A 90 590 38 HOH HOH . 
F 5 HOH A 91 591 129 HOH HOH . 
F 5 HOH A 92 592 68 HOH HOH . 
F 5 HOH A 93 593 72 HOH HOH . 
F 5 HOH A 94 594 23 HOH HOH . 
F 5 HOH A 95 595 145 HOH HOH . 
F 5 HOH A 96 596 70 HOH HOH . 
F 5 HOH A 97 597 16 HOH HOH . 
F 5 HOH A 98 598 97 HOH HOH . 
F 5 HOH A 99 599 62 HOH HOH . 
F 5 HOH A 100 600 32 HOH HOH . 
F 5 HOH A 101 601 60 HOH HOH . 
F 5 HOH A 102 602 117 HOH HOH . 
F 5 HOH A 103 603 112 HOH HOH . 
F 5 HOH A 104 604 25 HOH HOH . 
F 5 HOH A 105 605 5 HOH HOH . 
F 5 HOH A 106 606 188 HOH HOH . 
F 5 HOH A 107 607 119 HOH HOH . 
F 5 HOH A 108 608 189 HOH HOH . 
F 5 HOH A 109 609 114 HOH HOH . 
F 5 HOH A 110 610 126 HOH HOH . 
F 5 HOH A 111 611 53 HOH HOH . 
F 5 HOH A 112 612 89 HOH HOH . 
F 5 HOH A 113 613 102 HOH HOH . 
F 5 HOH A 114 614 9 HOH HOH . 
F 5 HOH A 115 615 150 HOH HOH . 
F 5 HOH A 116 616 58 HOH HOH . 
F 5 HOH A 117 617 133 HOH HOH . 
F 5 HOH A 118 618 76 HOH HOH . 
F 5 HOH A 119 619 33 HOH HOH . 
F 5 HOH A 120 620 83 HOH HOH . 
F 5 HOH A 121 621 104 HOH HOH . 
F 5 HOH A 122 622 175 HOH HOH . 
F 5 HOH A 123 623 37 HOH HOH . 
F 5 HOH A 124 624 92 HOH HOH . 
F 5 HOH A 125 625 143 HOH HOH . 
F 5 HOH A 126 626 75 HOH HOH . 
F 5 HOH A 127 627 87 HOH HOH . 
F 5 HOH A 128 628 174 HOH HOH . 
F 5 HOH A 129 629 147 HOH HOH . 
F 5 HOH A 130 630 195 HOH HOH . 
F 5 HOH A 131 631 59 HOH HOH . 
F 5 HOH A 132 632 36 HOH HOH . 
F 5 HOH A 133 633 155 HOH HOH . 
F 5 HOH A 134 634 122 HOH HOH . 
F 5 HOH A 135 635 45 HOH HOH . 
F 5 HOH A 136 636 169 HOH HOH . 
F 5 HOH A 137 637 134 HOH HOH . 
F 5 HOH A 138 638 141 HOH HOH . 
F 5 HOH A 139 639 63 HOH HOH . 
F 5 HOH A 140 640 187 HOH HOH . 
F 5 HOH A 141 641 127 HOH HOH . 
F 5 HOH A 142 642 106 HOH HOH . 
F 5 HOH A 143 643 161 HOH HOH . 
F 5 HOH A 144 644 51 HOH HOH . 
F 5 HOH A 145 645 183 HOH HOH . 
F 5 HOH A 146 646 173 HOH HOH . 
F 5 HOH A 147 647 177 HOH HOH . 
F 5 HOH A 148 648 138 HOH HOH . 
F 5 HOH A 149 649 95 HOH HOH . 
F 5 HOH A 150 650 144 HOH HOH . 
F 5 HOH A 151 651 111 HOH HOH . 
F 5 HOH A 152 652 113 HOH HOH . 
F 5 HOH A 153 653 148 HOH HOH . 
F 5 HOH A 154 654 163 HOH HOH . 
F 5 HOH A 155 655 140 HOH HOH . 
F 5 HOH A 156 656 185 HOH HOH . 
F 5 HOH A 157 657 158 HOH HOH . 
F 5 HOH A 158 658 176 HOH HOH . 
F 5 HOH A 159 659 159 HOH HOH . 
F 5 HOH A 160 660 128 HOH HOH . 
F 5 HOH A 161 661 110 HOH HOH . 
F 5 HOH A 162 662 171 HOH HOH . 
F 5 HOH A 163 663 98 HOH HOH . 
F 5 HOH A 164 664 90 HOH HOH . 
F 5 HOH A 165 665 149 HOH HOH . 
F 5 HOH A 166 666 135 HOH HOH . 
F 5 HOH A 167 667 181 HOH HOH . 
F 5 HOH A 168 668 178 HOH HOH . 
F 5 HOH A 169 669 123 HOH HOH . 
F 5 HOH A 170 670 81 HOH HOH . 
F 5 HOH A 171 671 142 HOH HOH . 
F 5 HOH A 172 672 180 HOH HOH . 
F 5 HOH A 173 673 165 HOH HOH . 
F 5 HOH A 174 674 190 HOH HOH . 
F 5 HOH A 175 675 162 HOH HOH . 
F 5 HOH A 176 676 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 89.035 28.656 18.286 1 44.01 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . B 2 89.582 29.261 17.026 1 45.08 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . B 2 90 27.548 18.707 1 44.39 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . B 2 87.61 28.185 18.127 1 43.49 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . B 2 88.986 31.328 19.513 1 41.35 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . B 2 89.871 31.956 18.499 1 41.5 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . B 2 89.232 31.758 20.938 1 40.95 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . B 2 89.203 29.747 19.441 1 42.69 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . B 2 87.43 31.663 19.233 1 41.12 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . B 2 86.37 31.168 20.068 1 41.34 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . B 2 85.088 31.109 19.278 1 41.57 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . B 2 84.643 32.444 18.961 1 41.01 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . B 2 85.146 30.412 17.926 1 42 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . B 2 85.08 28.994 18.028 1 42.56 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . B 2 83.899 30.972 17.246 1 41.84 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . B 2 82.723 30.364 17.747 1 42.71 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . B 2 83.879 32.416 17.769 1 40.38 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . B 2 84.448 33.374 16.833 1 38.71 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . B 2 85.673 33.982 16.915 1 38.09 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . B 2 85.923 34.814 15.933 1 37.94 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . B 2 84.782 34.746 15.145 1 37.76 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . B 2 84.387 35.442 13.985 1 36.91 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . B 2 85.159 36.341 13.367 1 36.31 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . B 2 83.15 35.192 13.493 1 37.2 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . B 2 82.384 34.282 14.106 1 37.2 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . B 2 82.659 33.551 15.191 1 37.29 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . B 2 83.87 33.851 15.681 1 37.98 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#