data_8EGU
#
_model_server_result.job_id            TB4E9BPc94Bb-BThOLE2Ug 
_model_server_result.datetime_utc      '2024-11-15 01:26:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8egu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8EGU 
#
_exptl.entry_id    8EGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8EGU 
_cell.length_a            111.159 
_cell.length_b            111.159 
_cell.length_c            141.744 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8EGU 
_atom_sites.fract_transf_matrix[1][1]    0.008996 
_atom_sites.fract_transf_matrix[1][2]    0.005194 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010388 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007055 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 401 ADP ADP . 
C 3 U35 A 1 402 402 U35 PFE . 
D 3 U35 A 1 403 403 U35 PFE . 
E 4 SO4 A 1 404 1 SO4 SO4 . 
F 5 HOH A 1 501 57 HOH HOH . 
F 5 HOH A 2 502 61 HOH HOH . 
F 5 HOH A 3 503 63 HOH HOH . 
F 5 HOH A 4 504 10 HOH HOH . 
F 5 HOH A 5 505 99 HOH HOH . 
F 5 HOH A 6 506 67 HOH HOH . 
F 5 HOH A 7 507 131 HOH HOH . 
F 5 HOH A 8 508 137 HOH HOH . 
F 5 HOH A 9 509 26 HOH HOH . 
F 5 HOH A 10 510 72 HOH HOH . 
F 5 HOH A 11 511 107 HOH HOH . 
F 5 HOH A 12 512 93 HOH HOH . 
F 5 HOH A 13 513 127 HOH HOH . 
F 5 HOH A 14 514 148 HOH HOH . 
F 5 HOH A 15 515 180 HOH HOH . 
F 5 HOH A 16 516 12 HOH HOH . 
F 5 HOH A 17 517 59 HOH HOH . 
F 5 HOH A 18 518 33 HOH HOH . 
F 5 HOH A 19 519 14 HOH HOH . 
F 5 HOH A 20 520 88 HOH HOH . 
F 5 HOH A 21 521 71 HOH HOH . 
F 5 HOH A 22 522 109 HOH HOH . 
F 5 HOH A 23 523 69 HOH HOH . 
F 5 HOH A 24 524 96 HOH HOH . 
F 5 HOH A 25 525 38 HOH HOH . 
F 5 HOH A 26 526 3 HOH HOH . 
F 5 HOH A 27 527 8 HOH HOH . 
F 5 HOH A 28 528 79 HOH HOH . 
F 5 HOH A 29 529 80 HOH HOH . 
F 5 HOH A 30 530 98 HOH HOH . 
F 5 HOH A 31 531 103 HOH HOH . 
F 5 HOH A 32 532 11 HOH HOH . 
F 5 HOH A 33 533 108 HOH HOH . 
F 5 HOH A 34 534 25 HOH HOH . 
F 5 HOH A 35 535 29 HOH HOH . 
F 5 HOH A 36 536 86 HOH HOH . 
F 5 HOH A 37 537 143 HOH HOH . 
F 5 HOH A 38 538 115 HOH HOH . 
F 5 HOH A 39 539 15 HOH HOH . 
F 5 HOH A 40 540 32 HOH HOH . 
F 5 HOH A 41 541 27 HOH HOH . 
F 5 HOH A 42 542 94 HOH HOH . 
F 5 HOH A 43 543 95 HOH HOH . 
F 5 HOH A 44 544 135 HOH HOH . 
F 5 HOH A 45 545 106 HOH HOH . 
F 5 HOH A 46 546 5 HOH HOH . 
F 5 HOH A 47 547 116 HOH HOH . 
F 5 HOH A 48 548 28 HOH HOH . 
F 5 HOH A 49 549 65 HOH HOH . 
F 5 HOH A 50 550 2 HOH HOH . 
F 5 HOH A 51 551 179 HOH HOH . 
F 5 HOH A 52 552 20 HOH HOH . 
F 5 HOH A 53 553 54 HOH HOH . 
F 5 HOH A 54 554 36 HOH HOH . 
F 5 HOH A 55 555 45 HOH HOH . 
F 5 HOH A 56 556 62 HOH HOH . 
F 5 HOH A 57 557 13 HOH HOH . 
F 5 HOH A 58 558 78 HOH HOH . 
F 5 HOH A 59 559 76 HOH HOH . 
F 5 HOH A 60 560 23 HOH HOH . 
F 5 HOH A 61 561 19 HOH HOH . 
F 5 HOH A 62 562 24 HOH HOH . 
F 5 HOH A 63 563 53 HOH HOH . 
F 5 HOH A 64 564 34 HOH HOH . 
F 5 HOH A 65 565 18 HOH HOH . 
F 5 HOH A 66 566 134 HOH HOH . 
F 5 HOH A 67 567 176 HOH HOH . 
F 5 HOH A 68 568 43 HOH HOH . 
F 5 HOH A 69 569 7 HOH HOH . 
F 5 HOH A 70 570 16 HOH HOH . 
F 5 HOH A 71 571 35 HOH HOH . 
F 5 HOH A 72 572 117 HOH HOH . 
F 5 HOH A 73 573 66 HOH HOH . 
F 5 HOH A 74 574 85 HOH HOH . 
F 5 HOH A 75 575 21 HOH HOH . 
F 5 HOH A 76 576 31 HOH HOH . 
F 5 HOH A 77 577 111 HOH HOH . 
F 5 HOH A 78 578 55 HOH HOH . 
F 5 HOH A 79 579 17 HOH HOH . 
F 5 HOH A 80 580 52 HOH HOH . 
F 5 HOH A 81 581 40 HOH HOH . 
F 5 HOH A 82 582 82 HOH HOH . 
F 5 HOH A 83 583 39 HOH HOH . 
F 5 HOH A 84 584 113 HOH HOH . 
F 5 HOH A 85 585 74 HOH HOH . 
F 5 HOH A 86 586 58 HOH HOH . 
F 5 HOH A 87 587 119 HOH HOH . 
F 5 HOH A 88 588 50 HOH HOH . 
F 5 HOH A 89 589 60 HOH HOH . 
F 5 HOH A 90 590 81 HOH HOH . 
F 5 HOH A 91 591 51 HOH HOH . 
F 5 HOH A 92 592 104 HOH HOH . 
F 5 HOH A 93 593 37 HOH HOH . 
F 5 HOH A 94 594 83 HOH HOH . 
F 5 HOH A 95 595 130 HOH HOH . 
F 5 HOH A 96 596 177 HOH HOH . 
F 5 HOH A 97 597 47 HOH HOH . 
F 5 HOH A 98 598 114 HOH HOH . 
F 5 HOH A 99 599 22 HOH HOH . 
F 5 HOH A 100 600 41 HOH HOH . 
F 5 HOH A 101 601 147 HOH HOH . 
F 5 HOH A 102 602 4 HOH HOH . 
F 5 HOH A 103 603 42 HOH HOH . 
F 5 HOH A 104 604 101 HOH HOH . 
F 5 HOH A 105 605 141 HOH HOH . 
F 5 HOH A 106 606 77 HOH HOH . 
F 5 HOH A 107 607 46 HOH HOH . 
F 5 HOH A 108 608 84 HOH HOH . 
F 5 HOH A 109 609 1 HOH HOH . 
F 5 HOH A 110 610 70 HOH HOH . 
F 5 HOH A 111 611 64 HOH HOH . 
F 5 HOH A 112 612 49 HOH HOH . 
F 5 HOH A 113 613 102 HOH HOH . 
F 5 HOH A 114 614 122 HOH HOH . 
F 5 HOH A 115 615 44 HOH HOH . 
F 5 HOH A 116 616 30 HOH HOH . 
F 5 HOH A 117 617 178 HOH HOH . 
F 5 HOH A 118 618 105 HOH HOH . 
F 5 HOH A 119 619 87 HOH HOH . 
F 5 HOH A 120 620 48 HOH HOH . 
F 5 HOH A 121 621 120 HOH HOH . 
F 5 HOH A 122 622 132 HOH HOH . 
F 5 HOH A 123 623 73 HOH HOH . 
F 5 HOH A 124 624 56 HOH HOH . 
F 5 HOH A 125 625 90 HOH HOH . 
F 5 HOH A 126 626 75 HOH HOH . 
F 5 HOH A 127 627 149 HOH HOH . 
F 5 HOH A 128 628 112 HOH HOH . 
F 5 HOH A 129 629 128 HOH HOH . 
F 5 HOH A 130 630 125 HOH HOH . 
F 5 HOH A 131 631 163 HOH HOH . 
F 5 HOH A 132 632 170 HOH HOH . 
F 5 HOH A 133 633 121 HOH HOH . 
F 5 HOH A 134 634 142 HOH HOH . 
F 5 HOH A 135 635 110 HOH HOH . 
F 5 HOH A 136 636 159 HOH HOH . 
F 5 HOH A 137 637 161 HOH HOH . 
F 5 HOH A 138 638 100 HOH HOH . 
F 5 HOH A 139 639 150 HOH HOH . 
F 5 HOH A 140 640 167 HOH HOH . 
F 5 HOH A 141 641 173 HOH HOH . 
F 5 HOH A 142 642 151 HOH HOH . 
F 5 HOH A 143 643 160 HOH HOH . 
F 5 HOH A 144 644 138 HOH HOH . 
F 5 HOH A 145 645 97 HOH HOH . 
F 5 HOH A 146 646 92 HOH HOH . 
F 5 HOH A 147 647 129 HOH HOH . 
F 5 HOH A 148 648 156 HOH HOH . 
F 5 HOH A 149 649 144 HOH HOH . 
F 5 HOH A 150 650 165 HOH HOH . 
F 5 HOH A 151 651 124 HOH HOH . 
F 5 HOH A 152 652 68 HOH HOH . 
F 5 HOH A 153 653 140 HOH HOH . 
F 5 HOH A 154 654 172 HOH HOH . 
F 5 HOH A 155 655 168 HOH HOH . 
F 5 HOH A 156 656 175 HOH HOH . 
F 5 HOH A 157 657 155 HOH HOH . 
F 5 HOH A 158 658 164 HOH HOH . 
F 5 HOH A 159 659 166 HOH HOH . 
F 5 HOH A 160 660 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 88.93 28.549 17.47 1 35.32 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . B 2 89.475 29.235 16.245 1 35.68 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . B 2 89.943 27.463 17.877 1 35.48 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . B 2 87.52 28.022 17.285 1 35.47 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . B 2 88.877 31.226 18.676 1 33.79 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . B 2 89.809 31.802 17.672 1 33.93 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . B 2 89.131 31.637 20.091 1 33.11 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . B 2 88.984 29.632 18.641 1 34.59 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . B 2 87.313 31.54 18.375 1 33.72 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . B 2 86.268 31.053 19.238 1 33.48 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . B 2 84.988 30.983 18.445 1 34.35 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . B 2 84.553 32.32 18.12 1 34.59 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . B 2 85.063 30.298 17.088 1 34.91 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . B 2 85.051 28.875 17.114 1 34.89 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . B 2 83.821 30.854 16.401 1 35.19 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . B 2 82.667 30.206 16.918 1 35.63 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . B 2 83.804 32.296 16.918 1 34.4 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . B 2 84.365 33.277 15.99 1 33.27 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . B 2 85.591 33.88 16.065 1 32.89 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . B 2 85.796 34.784 15.142 1 32.6 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . B 2 84.627 34.767 14.397 1 32.21 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . B 2 84.235 35.455 13.232 1 31.51 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . B 2 85.046 36.266 12.542 1 30.88 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . B 2 83.002 35.197 12.737 1 31.89 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . B 2 82.242 34.282 13.35 1 31.92 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . B 2 82.52 33.553 14.432 1 32.17 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . B 2 83.734 33.847 14.912 1 32.34 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#