data_8EGY
#
_model_server_result.job_id            5UTlzanI5FzWxeBR4TNjGA 
_model_server_result.datetime_utc      '2024-11-08 01:09:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8egy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    8EGY 
#
_exptl.entry_id    8EGY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EGY 
_cell.length_a            164.606 
_cell.length_b            164.606 
_cell.length_c            83.139 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EGY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    'I 4' 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 83 A LYS 83 1_555 C C4A PLP . A PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 B NZ LYS 83 B LYS 83 1_555 H C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
metalc ? metalc1 A O ALA 263 A ALA 263 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc2 A OG SER 265 A SER 265 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc3 A O TYR 301 A TYR 301 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc4 A O GLY 303 A GLY 303 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc5 D K K . A K 402 1_555 L O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc6 B O SER 228 B SER 228 1_555 I K K . B K 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.457 ? 
metalc ? metalc7 B O SER 228 B SER 228 1_555 I K K . B K 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.417 ? 
metalc ? metalc8 B O ALA 263 B ALA 263 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? 
metalc ? metalc9 B OG SER 265 B SER 265 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? 
metalc ? metalc10 B O TYR 301 B TYR 301 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc11 B O GLY 303 B GLY 303 1_555 I K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
metalc ? metalc12 I K K . B K 402 1_555 M O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8EGY 
_atom_sites.fract_transf_matrix[1][1]    0.006075 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006075 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 401 83 PLP LLP . 
D 3 K A 1 402 1 K K . 
E 4 EDO A 1 403 1 EDO EDO . 
F 4 EDO A 1 404 5 EDO EDO . 
G 5 PO4 A 1 405 3 PO4 PO4 . 
H 2 PLP B 1 401 83 PLP LLP . 
I 3 K B 1 402 2 K K . 
J 4 EDO B 1 403 4 EDO EDO . 
K 5 PO4 B 1 404 2 PO4 PO4 . 
L 6 HOH A 1 501 49 HOH HOH . 
L 6 HOH A 2 502 183 HOH HOH . 
L 6 HOH A 3 503 164 HOH HOH . 
L 6 HOH A 4 504 73 HOH HOH . 
L 6 HOH A 5 505 222 HOH HOH . 
L 6 HOH A 6 506 217 HOH HOH . 
L 6 HOH A 7 507 84 HOH HOH . 
L 6 HOH A 8 508 83 HOH HOH . 
L 6 HOH A 9 509 165 HOH HOH . 
L 6 HOH A 10 510 1 HOH HOH . 
L 6 HOH A 11 511 204 HOH HOH . 
L 6 HOH A 12 512 177 HOH HOH . 
L 6 HOH A 13 513 124 HOH HOH . 
L 6 HOH A 14 514 145 HOH HOH . 
L 6 HOH A 15 515 23 HOH HOH . 
L 6 HOH A 16 516 130 HOH HOH . 
L 6 HOH A 17 517 161 HOH HOH . 
L 6 HOH A 18 518 56 HOH HOH . 
L 6 HOH A 19 519 2 HOH HOH . 
L 6 HOH A 20 520 195 HOH HOH . 
L 6 HOH A 21 521 36 HOH HOH . 
L 6 HOH A 22 522 176 HOH HOH . 
L 6 HOH A 23 523 117 HOH HOH . 
L 6 HOH A 24 524 190 HOH HOH . 
L 6 HOH A 25 525 107 HOH HOH . 
L 6 HOH A 26 526 29 HOH HOH . 
L 6 HOH A 27 527 41 HOH HOH . 
L 6 HOH A 28 528 203 HOH HOH . 
L 6 HOH A 29 529 159 HOH HOH . 
L 6 HOH A 30 530 200 HOH HOH . 
L 6 HOH A 31 531 87 HOH HOH . 
L 6 HOH A 32 532 99 HOH HOH . 
L 6 HOH A 33 533 166 HOH HOH . 
L 6 HOH A 34 534 13 HOH HOH . 
L 6 HOH A 35 535 51 HOH HOH . 
L 6 HOH A 36 536 173 HOH HOH . 
L 6 HOH A 37 537 114 HOH HOH . 
L 6 HOH A 38 538 118 HOH HOH . 
L 6 HOH A 39 539 218 HOH HOH . 
L 6 HOH A 40 540 136 HOH HOH . 
L 6 HOH A 41 541 79 HOH HOH . 
L 6 HOH A 42 542 95 HOH HOH . 
L 6 HOH A 43 543 34 HOH HOH . 
L 6 HOH A 44 544 47 HOH HOH . 
L 6 HOH A 45 545 75 HOH HOH . 
L 6 HOH A 46 546 78 HOH HOH . 
L 6 HOH A 47 547 119 HOH HOH . 
L 6 HOH A 48 548 82 HOH HOH . 
L 6 HOH A 49 549 37 HOH HOH . 
L 6 HOH A 50 550 77 HOH HOH . 
L 6 HOH A 51 551 65 HOH HOH . 
L 6 HOH A 52 552 111 HOH HOH . 
L 6 HOH A 53 553 33 HOH HOH . 
L 6 HOH A 54 554 97 HOH HOH . 
L 6 HOH A 55 555 208 HOH HOH . 
L 6 HOH A 56 556 132 HOH HOH . 
L 6 HOH A 57 557 31 HOH HOH . 
L 6 HOH A 58 558 205 HOH HOH . 
L 6 HOH A 59 559 39 HOH HOH . 
L 6 HOH A 60 560 61 HOH HOH . 
L 6 HOH A 61 561 197 HOH HOH . 
L 6 HOH A 62 562 32 HOH HOH . 
L 6 HOH A 63 563 60 HOH HOH . 
L 6 HOH A 64 564 137 HOH HOH . 
L 6 HOH A 65 565 18 HOH HOH . 
L 6 HOH A 66 566 26 HOH HOH . 
L 6 HOH A 67 567 42 HOH HOH . 
L 6 HOH A 68 568 115 HOH HOH . 
L 6 HOH A 69 569 129 HOH HOH . 
L 6 HOH A 70 570 150 HOH HOH . 
L 6 HOH A 71 571 96 HOH HOH . 
L 6 HOH A 72 572 157 HOH HOH . 
L 6 HOH A 73 573 50 HOH HOH . 
L 6 HOH A 74 574 207 HOH HOH . 
L 6 HOH A 75 575 192 HOH HOH . 
L 6 HOH A 76 576 162 HOH HOH . 
L 6 HOH A 77 577 3 HOH HOH . 
L 6 HOH A 78 578 8 HOH HOH . 
L 6 HOH A 79 579 133 HOH HOH . 
L 6 HOH A 80 580 7 HOH HOH . 
L 6 HOH A 81 581 66 HOH HOH . 
L 6 HOH A 82 582 22 HOH HOH . 
L 6 HOH A 83 583 201 HOH HOH . 
L 6 HOH A 84 584 221 HOH HOH . 
L 6 HOH A 85 585 105 HOH HOH . 
L 6 HOH A 86 586 134 HOH HOH . 
L 6 HOH A 87 587 113 HOH HOH . 
L 6 HOH A 88 588 184 HOH HOH . 
L 6 HOH A 89 589 53 HOH HOH . 
L 6 HOH A 90 590 69 HOH HOH . 
L 6 HOH A 91 591 94 HOH HOH . 
L 6 HOH A 92 592 138 HOH HOH . 
L 6 HOH A 93 593 154 HOH HOH . 
L 6 HOH A 94 594 213 HOH HOH . 
L 6 HOH A 95 595 143 HOH HOH . 
L 6 HOH A 96 596 214 HOH HOH . 
L 6 HOH A 97 597 227 HOH HOH . 
L 6 HOH A 98 598 131 HOH HOH . 
L 6 HOH A 99 599 46 HOH HOH . 
L 6 HOH A 100 600 216 HOH HOH . 
L 6 HOH A 101 601 71 HOH HOH . 
L 6 HOH A 102 602 141 HOH HOH . 
L 6 HOH A 103 603 147 HOH HOH . 
L 6 HOH A 104 604 16 HOH HOH . 
L 6 HOH A 105 605 152 HOH HOH . 
L 6 HOH A 106 606 120 HOH HOH . 
L 6 HOH A 107 607 72 HOH HOH . 
L 6 HOH A 108 608 85 HOH HOH . 
L 6 HOH A 109 609 108 HOH HOH . 
L 6 HOH A 110 610 206 HOH HOH . 
L 6 HOH A 111 611 89 HOH HOH . 
L 6 HOH A 112 612 5 HOH HOH . 
L 6 HOH A 113 613 167 HOH HOH . 
L 6 HOH A 114 614 25 HOH HOH . 
L 6 HOH A 115 615 186 HOH HOH . 
L 6 HOH A 116 616 43 HOH HOH . 
L 6 HOH A 117 617 98 HOH HOH . 
L 6 HOH A 118 618 180 HOH HOH . 
L 6 HOH A 119 619 4 HOH HOH . 
L 6 HOH A 120 620 48 HOH HOH . 
L 6 HOH A 121 621 140 HOH HOH . 
L 6 HOH A 122 622 68 HOH HOH . 
L 6 HOH A 123 623 224 HOH HOH . 
L 6 HOH A 124 624 171 HOH HOH . 
L 6 HOH A 125 625 223 HOH HOH . 
L 6 HOH A 126 626 90 HOH HOH . 
L 6 HOH A 127 627 158 HOH HOH . 
L 6 HOH A 128 628 178 HOH HOH . 
L 6 HOH A 129 629 52 HOH HOH . 
L 6 HOH A 130 630 202 HOH HOH . 
L 6 HOH A 131 631 122 HOH HOH . 
L 6 HOH A 132 632 123 HOH HOH . 
L 6 HOH A 133 633 194 HOH HOH . 
L 6 HOH A 134 634 100 HOH HOH . 
L 6 HOH A 135 635 139 HOH HOH . 
L 6 HOH A 136 636 142 HOH HOH . 
L 6 HOH A 137 637 80 HOH HOH . 
L 6 HOH A 138 638 59 HOH HOH . 
L 6 HOH A 139 639 110 HOH HOH . 
L 6 HOH A 140 640 128 HOH HOH . 
L 6 HOH A 141 641 62 HOH HOH . 
L 6 HOH A 142 642 181 HOH HOH . 
L 6 HOH A 143 643 168 HOH HOH . 
L 6 HOH A 144 644 215 HOH HOH . 
L 6 HOH A 145 645 226 HOH HOH . 
L 6 HOH A 146 646 116 HOH HOH . 
L 6 HOH A 147 647 182 HOH HOH . 
L 6 HOH A 148 648 104 HOH HOH . 
L 6 HOH A 149 649 163 HOH HOH . 
M 6 HOH B 1 501 220 HOH HOH . 
M 6 HOH B 2 502 40 HOH HOH . 
M 6 HOH B 3 503 86 HOH HOH . 
M 6 HOH B 4 504 185 HOH HOH . 
M 6 HOH B 5 505 191 HOH HOH . 
M 6 HOH B 6 506 19 HOH HOH . 
M 6 HOH B 7 507 170 HOH HOH . 
M 6 HOH B 8 508 169 HOH HOH . 
M 6 HOH B 9 509 148 HOH HOH . 
M 6 HOH B 10 510 54 HOH HOH . 
M 6 HOH B 11 511 92 HOH HOH . 
M 6 HOH B 12 512 63 HOH HOH . 
M 6 HOH B 13 513 225 HOH HOH . 
M 6 HOH B 14 514 11 HOH HOH . 
M 6 HOH B 15 515 187 HOH HOH . 
M 6 HOH B 16 516 64 HOH HOH . 
M 6 HOH B 17 517 28 HOH HOH . 
M 6 HOH B 18 518 219 HOH HOH . 
M 6 HOH B 19 519 20 HOH HOH . 
M 6 HOH B 20 520 135 HOH HOH . 
M 6 HOH B 21 521 30 HOH HOH . 
M 6 HOH B 22 522 112 HOH HOH . 
M 6 HOH B 23 523 211 HOH HOH . 
M 6 HOH B 24 524 15 HOH HOH . 
M 6 HOH B 25 525 199 HOH HOH . 
M 6 HOH B 26 526 10 HOH HOH . 
M 6 HOH B 27 527 74 HOH HOH . 
M 6 HOH B 28 528 121 HOH HOH . 
M 6 HOH B 29 529 155 HOH HOH . 
M 6 HOH B 30 530 156 HOH HOH . 
M 6 HOH B 31 531 127 HOH HOH . 
M 6 HOH B 32 532 55 HOH HOH . 
M 6 HOH B 33 533 58 HOH HOH . 
M 6 HOH B 34 534 12 HOH HOH . 
M 6 HOH B 35 535 6 HOH HOH . 
M 6 HOH B 36 536 44 HOH HOH . 
M 6 HOH B 37 537 153 HOH HOH . 
M 6 HOH B 38 538 45 HOH HOH . 
M 6 HOH B 39 539 38 HOH HOH . 
M 6 HOH B 40 540 27 HOH HOH . 
M 6 HOH B 41 541 67 HOH HOH . 
M 6 HOH B 42 542 91 HOH HOH . 
M 6 HOH B 43 543 228 HOH HOH . 
M 6 HOH B 44 544 109 HOH HOH . 
M 6 HOH B 45 545 175 HOH HOH . 
M 6 HOH B 46 546 21 HOH HOH . 
M 6 HOH B 47 547 174 HOH HOH . 
M 6 HOH B 48 548 102 HOH HOH . 
M 6 HOH B 49 549 101 HOH HOH . 
M 6 HOH B 50 550 93 HOH HOH . 
M 6 HOH B 51 551 212 HOH HOH . 
M 6 HOH B 52 552 57 HOH HOH . 
M 6 HOH B 53 553 70 HOH HOH . 
M 6 HOH B 54 554 160 HOH HOH . 
M 6 HOH B 55 555 9 HOH HOH . 
M 6 HOH B 56 556 179 HOH HOH . 
M 6 HOH B 57 557 106 HOH HOH . 
M 6 HOH B 58 558 210 HOH HOH . 
M 6 HOH B 59 559 193 HOH HOH . 
M 6 HOH B 60 560 172 HOH HOH . 
M 6 HOH B 61 561 189 HOH HOH . 
M 6 HOH B 62 562 196 HOH HOH . 
M 6 HOH B 63 563 76 HOH HOH . 
M 6 HOH B 64 564 151 HOH HOH . 
M 6 HOH B 65 565 144 HOH HOH . 
M 6 HOH B 66 566 88 HOH HOH . 
M 6 HOH B 67 567 209 HOH HOH . 
M 6 HOH B 68 568 188 HOH HOH . 
M 6 HOH B 69 569 198 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 4 43.871 -50.97 -11.618 1 78.93 ? C1 EDO 404 A 1 
HETATM 2 O O1 EDO . . . F 4 44.397 -49.705 -11.202 1 59.12 ? O1 EDO 404 A 1 
HETATM 3 C C2 EDO . . . F 4 43.229 -50.827 -12.992 1 81.2 ? C2 EDO 404 A 1 
HETATM 4 O O2 EDO . . . F 4 42.17 -49.865 -12.929 1 69.01 ? O2 EDO 404 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#