data_8EH1 # _model_server_result.job_id 2Jmp9c_iaJ2ewtpdWiz7yA _model_server_result.datetime_utc '2024-12-01 18:35:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8EH1 # _exptl.entry_id 8EH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.204 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EH1 _cell.length_a 164.862 _cell.length_b 164.862 _cell.length_c 84.057 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall 'I 4' _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 263 A ALA 263 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc2 A OG SER 265 A SER 265 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc3 A O TYR 301 A TYR 301 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc4 A O GLY 303 A GLY 303 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc5 E K K . A K 403 1_555 I O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc6 B O ALA 263 B ALA 263 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc7 B OG SER 265 B SER 265 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc8 B O TYR 301 B TYR 301 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc9 B O GLY 303 B GLY 303 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc10 H K K . B K 403 1_555 J O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? # _chem_comp.formula 'C11 H13 N2 O7 P' _chem_comp.formula_weight 316.204 _chem_comp.id 0JO _chem_comp.mon_nstd_flag . _chem_comp.name '2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 0JO doub 1 n n OXT C 0JO sing 2 n n C CA 0JO sing 3 n n CA CB 0JO doub 4 n n CA N 0JO sing 5 n n O3 C3 0JO sing 6 n n N C4A 0JO doub 7 n n C4A C4 0JO sing 8 n n C3 C4 0JO doub 9 n y C3 C2 0JO sing 10 n y C2A C2 0JO sing 11 n n C4 C5 0JO sing 12 n y C2 N1 0JO doub 13 n y OP3 P 0JO doub 14 n n C5 C5A 0JO sing 15 n n C5 C6 0JO doub 16 n y N1 C6 0JO sing 17 n y OP4 C5A 0JO sing 18 n n OP4 P 0JO sing 19 n n OP1 P 0JO sing 20 n n P OP2 0JO sing 21 n n OXT H1 0JO sing 22 n n CB H2 0JO sing 23 n n CB H3 0JO sing 24 n n C4A H4 0JO sing 25 n n O3 H5 0JO sing 26 n n C2A H6 0JO sing 27 n n C2A H7 0JO sing 28 n n C2A H8 0JO sing 29 n n C6 H9 0JO sing 30 n n C5A H10 0JO sing 31 n n C5A H11 0JO sing 32 n n OP1 H12 0JO sing 33 n n OP2 H13 0JO sing 34 n n # _atom_sites.entry_id 8EH1 _atom_sites.fract_transf_matrix[1][1] 0.006066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0JO A 1 401 401 0JO 0JO . D 3 ES1 A 1 402 402 ES1 QOH . E 4 K A 1 403 1 K K . F 2 0JO B 1 401 401 0JO 0JO . G 3 ES1 B 1 402 402 ES1 QOH . H 4 K B 1 403 2 K K . I 5 HOH A 1 501 124 HOH HOH . I 5 HOH A 2 502 12 HOH HOH . I 5 HOH A 3 503 1 HOH HOH . I 5 HOH A 4 504 75 HOH HOH . I 5 HOH A 5 505 39 HOH HOH . I 5 HOH A 6 506 76 HOH HOH . I 5 HOH A 7 507 33 HOH HOH . I 5 HOH A 8 508 40 HOH HOH . I 5 HOH A 9 509 113 HOH HOH . I 5 HOH A 10 510 56 HOH HOH . I 5 HOH A 11 511 71 HOH HOH . I 5 HOH A 12 512 115 HOH HOH . I 5 HOH A 13 513 173 HOH HOH . I 5 HOH A 14 514 90 HOH HOH . I 5 HOH A 15 515 68 HOH HOH . I 5 HOH A 16 516 148 HOH HOH . I 5 HOH A 17 517 155 HOH HOH . I 5 HOH A 18 518 58 HOH HOH . I 5 HOH A 19 519 132 HOH HOH . I 5 HOH A 20 520 44 HOH HOH . I 5 HOH A 21 521 123 HOH HOH . I 5 HOH A 22 522 150 HOH HOH . I 5 HOH A 23 523 63 HOH HOH . I 5 HOH A 24 524 59 HOH HOH . I 5 HOH A 25 525 74 HOH HOH . I 5 HOH A 26 526 80 HOH HOH . I 5 HOH A 27 527 99 HOH HOH . I 5 HOH A 28 528 24 HOH HOH . I 5 HOH A 29 529 19 HOH HOH . I 5 HOH A 30 530 35 HOH HOH . I 5 HOH A 31 531 14 HOH HOH . I 5 HOH A 32 532 102 HOH HOH . I 5 HOH A 33 533 159 HOH HOH . I 5 HOH A 34 534 135 HOH HOH . I 5 HOH A 35 535 11 HOH HOH . I 5 HOH A 36 536 28 HOH HOH . I 5 HOH A 37 537 138 HOH HOH . I 5 HOH A 38 538 10 HOH HOH . I 5 HOH A 39 539 30 HOH HOH . I 5 HOH A 40 540 9 HOH HOH . I 5 HOH A 41 541 25 HOH HOH . I 5 HOH A 42 542 72 HOH HOH . I 5 HOH A 43 543 120 HOH HOH . I 5 HOH A 44 544 87 HOH HOH . I 5 HOH A 45 545 37 HOH HOH . I 5 HOH A 46 546 97 HOH HOH . I 5 HOH A 47 547 60 HOH HOH . I 5 HOH A 48 548 26 HOH HOH . I 5 HOH A 49 549 156 HOH HOH . I 5 HOH A 50 550 161 HOH HOH . I 5 HOH A 51 551 21 HOH HOH . I 5 HOH A 52 552 41 HOH HOH . I 5 HOH A 53 553 142 HOH HOH . I 5 HOH A 54 554 167 HOH HOH . I 5 HOH A 55 555 109 HOH HOH . I 5 HOH A 56 556 48 HOH HOH . I 5 HOH A 57 557 50 HOH HOH . I 5 HOH A 58 558 7 HOH HOH . I 5 HOH A 59 559 17 HOH HOH . I 5 HOH A 60 560 110 HOH HOH . I 5 HOH A 61 561 47 HOH HOH . I 5 HOH A 62 562 73 HOH HOH . I 5 HOH A 63 563 86 HOH HOH . I 5 HOH A 64 564 129 HOH HOH . I 5 HOH A 65 565 91 HOH HOH . I 5 HOH A 66 566 149 HOH HOH . I 5 HOH A 67 567 163 HOH HOH . I 5 HOH A 68 568 165 HOH HOH . I 5 HOH A 69 569 64 HOH HOH . I 5 HOH A 70 570 116 HOH HOH . I 5 HOH A 71 571 122 HOH HOH . I 5 HOH A 72 572 46 HOH HOH . I 5 HOH A 73 573 82 HOH HOH . I 5 HOH A 74 574 146 HOH HOH . I 5 HOH A 75 575 157 HOH HOH . I 5 HOH A 76 576 160 HOH HOH . I 5 HOH A 77 577 92 HOH HOH . I 5 HOH A 78 578 145 HOH HOH . I 5 HOH A 79 579 175 HOH HOH . I 5 HOH A 80 580 13 HOH HOH . I 5 HOH A 81 581 104 HOH HOH . I 5 HOH A 82 582 171 HOH HOH . I 5 HOH A 83 583 3 HOH HOH . I 5 HOH A 84 584 45 HOH HOH . I 5 HOH A 85 585 131 HOH HOH . I 5 HOH A 86 586 36 HOH HOH . I 5 HOH A 87 587 172 HOH HOH . I 5 HOH A 88 588 106 HOH HOH . I 5 HOH A 89 589 117 HOH HOH . I 5 HOH A 90 590 119 HOH HOH . I 5 HOH A 91 591 20 HOH HOH . I 5 HOH A 92 592 6 HOH HOH . I 5 HOH A 93 593 85 HOH HOH . I 5 HOH A 94 594 18 HOH HOH . I 5 HOH A 95 595 141 HOH HOH . I 5 HOH A 96 596 77 HOH HOH . I 5 HOH A 97 597 55 HOH HOH . I 5 HOH A 98 598 61 HOH HOH . I 5 HOH A 99 599 114 HOH HOH . I 5 HOH A 100 600 81 HOH HOH . I 5 HOH A 101 601 166 HOH HOH . I 5 HOH A 102 602 133 HOH HOH . I 5 HOH A 103 603 139 HOH HOH . I 5 HOH A 104 604 158 HOH HOH . I 5 HOH A 105 605 78 HOH HOH . I 5 HOH A 106 606 136 HOH HOH . I 5 HOH A 107 607 164 HOH HOH . I 5 HOH A 108 608 128 HOH HOH . I 5 HOH A 109 609 69 HOH HOH . J 5 HOH B 1 501 38 HOH HOH . J 5 HOH B 2 502 34 HOH HOH . J 5 HOH B 3 503 170 HOH HOH . J 5 HOH B 4 504 107 HOH HOH . J 5 HOH B 5 505 134 HOH HOH . J 5 HOH B 6 506 108 HOH HOH . J 5 HOH B 7 507 118 HOH HOH . J 5 HOH B 8 508 31 HOH HOH . J 5 HOH B 9 509 23 HOH HOH . J 5 HOH B 10 510 98 HOH HOH . J 5 HOH B 11 511 105 HOH HOH . J 5 HOH B 12 512 176 HOH HOH . J 5 HOH B 13 513 2 HOH HOH . J 5 HOH B 14 514 94 HOH HOH . J 5 HOH B 15 515 147 HOH HOH . J 5 HOH B 16 516 79 HOH HOH . J 5 HOH B 17 517 65 HOH HOH . J 5 HOH B 18 518 100 HOH HOH . J 5 HOH B 19 519 27 HOH HOH . J 5 HOH B 20 520 16 HOH HOH . J 5 HOH B 21 521 54 HOH HOH . J 5 HOH B 22 522 15 HOH HOH . J 5 HOH B 23 523 154 HOH HOH . J 5 HOH B 24 524 52 HOH HOH . J 5 HOH B 25 525 101 HOH HOH . J 5 HOH B 26 526 84 HOH HOH . J 5 HOH B 27 527 43 HOH HOH . J 5 HOH B 28 528 57 HOH HOH . J 5 HOH B 29 529 121 HOH HOH . J 5 HOH B 30 530 112 HOH HOH . J 5 HOH B 31 531 95 HOH HOH . J 5 HOH B 32 532 152 HOH HOH . J 5 HOH B 33 533 125 HOH HOH . J 5 HOH B 34 534 62 HOH HOH . J 5 HOH B 35 535 96 HOH HOH . J 5 HOH B 36 536 66 HOH HOH . J 5 HOH B 37 537 127 HOH HOH . J 5 HOH B 38 538 22 HOH HOH . J 5 HOH B 39 539 53 HOH HOH . J 5 HOH B 40 540 151 HOH HOH . J 5 HOH B 41 541 29 HOH HOH . J 5 HOH B 42 542 49 HOH HOH . J 5 HOH B 43 543 111 HOH HOH . J 5 HOH B 44 544 103 HOH HOH . J 5 HOH B 45 545 32 HOH HOH . J 5 HOH B 46 546 8 HOH HOH . J 5 HOH B 47 547 70 HOH HOH . J 5 HOH B 48 548 51 HOH HOH . J 5 HOH B 49 549 5 HOH HOH . J 5 HOH B 50 550 93 HOH HOH . J 5 HOH B 51 551 168 HOH HOH . J 5 HOH B 52 552 83 HOH HOH . J 5 HOH B 53 553 67 HOH HOH . J 5 HOH B 54 554 174 HOH HOH . J 5 HOH B 55 555 4 HOH HOH . J 5 HOH B 56 556 169 HOH HOH . J 5 HOH B 57 557 130 HOH HOH . J 5 HOH B 58 558 143 HOH HOH . J 5 HOH B 59 559 42 HOH HOH . J 5 HOH B 60 560 162 HOH HOH . J 5 HOH B 61 561 153 HOH HOH . J 5 HOH B 62 562 126 HOH HOH . J 5 HOH B 63 563 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 0JO . . . C 2 42.884 -56.312 -5.168 1 51.24 ? O 0JO 401 A 1 HETATM 2 C C 0JO . . . C 2 42.195 -56.824 -4.317 1 43.54 ? C 0JO 401 A 1 HETATM 3 O OXT 0JO . . . C 2 41.567 -57.811 -4.479 1 49.91 ? OXT 0JO 401 A 1 HETATM 4 C CA 0JO . . . C 2 42.103 -56.258 -3.034 1 52.9 ? CA 0JO 401 A 1 HETATM 5 C CB 0JO . . . C 2 42.901 -55.19 -2.65 1 48.81 ? CB 0JO 401 A 1 HETATM 6 N N 0JO . . . C 2 41.219 -56.777 -2.128 1 52.19 ? N 0JO 401 A 1 HETATM 7 C C4A 0JO . . . C 2 40.358 -56.08 -1.492 1 47.09 ? C4A 0JO 401 A 1 HETATM 8 C C4 0JO . . . C 2 39.444 -56.657 -0.496 1 37.1 ? C4 0JO 401 A 1 HETATM 9 C C3 0JO . . . C 2 39.004 -57.989 -0.582 1 36.08 ? C3 0JO 401 A 1 HETATM 10 O O3 0JO . . . C 2 39.395 -58.819 -1.575 1 43.04 ? O3 0JO 401 A 1 HETATM 11 C C2 0JO . . . C 2 38.128 -58.497 0.392 1 33.2 ? C2 0JO 401 A 1 HETATM 12 C C2A 0JO . . . C 2 37.649 -59.909 0.325 1 30.57 ? C2A 0JO 401 A 1 HETATM 13 N N1 0JO . . . C 2 37.709 -57.729 1.393 1 38.12 ? N1 0JO 401 A 1 HETATM 14 C C6 0JO . . . C 2 38.127 -56.451 1.474 1 42.14 ? C6 0JO 401 A 1 HETATM 15 C C5 0JO . . . C 2 38.983 -55.878 0.575 1 38.2 ? C5 0JO 401 A 1 HETATM 16 C C5A 0JO . . . C 2 39.395 -54.445 0.741 1 39.86 ? C5A 0JO 401 A 1 HETATM 17 O OP4 0JO . . . C 2 38.747 -53.643 -0.291 1 37.9 ? OP4 0JO 401 A 1 HETATM 18 P P 0JO . . . C 2 37.605 -52.59 0.076 1 41.2 ? P 0JO 401 A 1 HETATM 19 O OP3 0JO . . . C 2 37.469 -51.721 -1.141 1 36.74 ? OP3 0JO 401 A 1 HETATM 20 O OP1 0JO . . . C 2 36.362 -53.392 0.371 1 38.81 ? OP1 0JO 401 A 1 HETATM 21 O OP2 0JO . . . C 2 38.115 -51.842 1.285 1 45.35 -1 OP2 0JO 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #