data_8EHP
#
_model_server_result.job_id            lLXfEC8zvveNyCS2tbqN2A 
_model_server_result.datetime_utc      '2024-11-24 01:19:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ehp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":901}' 
#
_entry.id    8EHP 
#
_exptl.entry_id    8EHP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.536 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,3R,4R,5S)-2-(hydroxymethyl)-1-[(4-{[4-(morpholin-4-yl)anilino]methyl}phenyl)methyl]piperidine-3,4,5-triol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EHP 
_cell.length_a            135.516 
_cell.length_b            178.431 
_cell.length_c            180.561 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EHP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,R 1 1 
B,J,K,L,M,N,O,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 656 A CYS 654 1_555 A SG CYS 670 A CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 656 B CYS 654 1_555 B SG CYS 670 B CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 A ND2 ASN 47 A ASN 45 1_555 D C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? 
covale ? covale2 B ND2 ASN 47 B ASN 45 1_555 K C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
#
_chem_comp.formula           'C24 H33 N3 O5' 
_chem_comp.formula_weight    443.536 
_chem_comp.id                WJO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,3R,4R,5S)-2-(hydroxymethyl)-1-[(4-{[4-(morpholin-4-yl)anilino]methyl}phenyl)methyl]piperidine-3,4,5-triol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C24 WJO sing 455 n n 
O4 C23 WJO sing 456 n n 
C23 C24 WJO sing 457 n n 
C23 C22 WJO sing 458 n n 
O2 C3 WJO sing 459 n n 
C24 C1 WJO sing 460 n n 
C22 N1 WJO sing 461 n n 
C1 O1 WJO sing 462 n n 
C1 C2 WJO sing 463 n n 
N1 C4 WJO sing 464 n n 
N1 C2 WJO sing 465 n n 
C4 C5 WJO sing 466 n n 
C3 C2 WJO sing 467 n n 
C5 C21 WJO doub 468 n y 
C5 C6 WJO sing 469 n y 
C21 C20 WJO sing 470 n y 
C6 C7 WJO doub 471 n y 
C20 C8 WJO doub 472 n y 
C7 C8 WJO sing 473 n y 
C8 C9 WJO sing 474 n n 
N2 C9 WJO sing 475 n n 
N2 C10 WJO sing 476 n n 
O3 C16 WJO sing 477 n n 
O3 C15 WJO sing 478 n n 
C10 C11 WJO doub 479 n y 
C10 C19 WJO sing 480 n y 
C11 C12 WJO sing 481 n y 
C19 C18 WJO doub 482 n y 
C16 C17 WJO sing 483 n n 
C12 C13 WJO doub 484 n y 
C18 C13 WJO sing 485 n y 
C13 N3 WJO sing 486 n n 
C17 N3 WJO sing 487 n n 
N3 C14 WJO sing 488 n n 
C15 C14 WJO sing 489 n n 
C4 H2 WJO sing 490 n n 
C4 H3 WJO sing 491 n n 
C6 H4 WJO sing 492 n n 
C7 H5 WJO sing 493 n n 
C15 H6 WJO sing 494 n n 
C15 H7 WJO sing 495 n n 
C17 H8 WJO sing 496 n n 
C17 H9 WJO sing 497 n n 
C20 H10 WJO sing 498 n n 
C21 H11 WJO sing 499 n n 
C22 H12 WJO sing 500 n n 
C22 H13 WJO sing 501 n n 
C24 H14 WJO sing 502 n n 
C1 H15 WJO sing 503 n n 
C11 H16 WJO sing 504 n n 
C12 H17 WJO sing 505 n n 
C14 H18 WJO sing 506 n n 
C14 H19 WJO sing 507 n n 
C16 H20 WJO sing 508 n n 
C16 H21 WJO sing 509 n n 
C18 H22 WJO sing 510 n n 
C19 H23 WJO sing 511 n n 
C2 H24 WJO sing 512 n n 
C23 H25 WJO sing 513 n n 
C3 H26 WJO sing 514 n n 
C3 H27 WJO sing 515 n n 
C9 H28 WJO sing 516 n n 
C9 H29 WJO sing 517 n n 
N2 H30 WJO sing 518 n n 
O1 H31 WJO sing 519 n n 
O2 H32 WJO sing 520 n n 
O4 H33 WJO sing 521 n n 
O5 H34 WJO sing 522 n n 
#
_atom_sites.entry_id                     8EHP 
_atom_sites.fract_transf_matrix[1][1]    0.007379 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005604 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005538 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 WJO A 1 901 901 WJO LIG . 
D 3 NAG A 1 902 1001 NAG NAG . 
E 4 SO4 A 1 903 1 SO4 SO4 . 
F 4 SO4 A 1 904 2 SO4 SO4 . 
G 4 SO4 A 1 905 3 SO4 SO4 . 
H 4 SO4 A 1 906 4 SO4 SO4 . 
I 4 SO4 A 1 907 5 SO4 SO4 . 
J 2 WJO B 1 901 901 WJO LIG . 
K 3 NAG B 1 902 1001 NAG NAG . 
L 5 BTB B 1 903 1101 BTB BTB . 
M 6 GOL B 1 904 1201 GOL GOL . 
N 4 SO4 B 1 905 6 SO4 SO4 . 
O 4 SO4 B 1 906 7 SO4 SO4 . 
P 4 SO4 B 1 907 8 SO4 SO4 . 
Q 4 SO4 B 1 908 9 SO4 SO4 . 
R 7 HOH A 1 1001 57 HOH HOH . 
R 7 HOH A 2 1002 61 HOH HOH . 
R 7 HOH A 3 1003 6 HOH HOH . 
R 7 HOH A 4 1004 14 HOH HOH . 
R 7 HOH A 5 1005 28 HOH HOH . 
R 7 HOH A 6 1006 34 HOH HOH . 
R 7 HOH A 7 1007 3 HOH HOH . 
R 7 HOH A 8 1008 25 HOH HOH . 
R 7 HOH A 9 1009 52 HOH HOH . 
R 7 HOH A 10 1010 16 HOH HOH . 
R 7 HOH A 11 1011 51 HOH HOH . 
R 7 HOH A 12 1012 35 HOH HOH . 
R 7 HOH A 13 1013 31 HOH HOH . 
R 7 HOH A 14 1014 8 HOH HOH . 
R 7 HOH A 15 1015 2 HOH HOH . 
R 7 HOH A 16 1016 46 HOH HOH . 
R 7 HOH A 17 1017 42 HOH HOH . 
R 7 HOH A 18 1018 53 HOH HOH . 
R 7 HOH A 19 1019 4 HOH HOH . 
R 7 HOH A 20 1020 41 HOH HOH . 
R 7 HOH A 21 1021 11 HOH HOH . 
R 7 HOH A 22 1022 19 HOH HOH . 
R 7 HOH A 23 1023 54 HOH HOH . 
R 7 HOH A 24 1024 39 HOH HOH . 
R 7 HOH A 25 1025 1 HOH HOH . 
S 7 HOH B 1 1001 45 HOH HOH . 
S 7 HOH B 2 1002 26 HOH HOH . 
S 7 HOH B 3 1003 32 HOH HOH . 
S 7 HOH B 4 1004 36 HOH HOH . 
S 7 HOH B 5 1005 7 HOH HOH . 
S 7 HOH B 6 1006 9 HOH HOH . 
S 7 HOH B 7 1007 48 HOH HOH . 
S 7 HOH B 8 1008 49 HOH HOH . 
S 7 HOH B 9 1009 58 HOH HOH . 
S 7 HOH B 10 1010 22 HOH HOH . 
S 7 HOH B 11 1011 12 HOH HOH . 
S 7 HOH B 12 1012 20 HOH HOH . 
S 7 HOH B 13 1013 17 HOH HOH . 
S 7 HOH B 14 1014 27 HOH HOH . 
S 7 HOH B 15 1015 47 HOH HOH . 
S 7 HOH B 16 1016 13 HOH HOH . 
S 7 HOH B 17 1017 21 HOH HOH . 
S 7 HOH B 18 1018 44 HOH HOH . 
S 7 HOH B 19 1019 56 HOH HOH . 
S 7 HOH B 20 1020 18 HOH HOH . 
S 7 HOH B 21 1021 43 HOH HOH . 
S 7 HOH B 22 1022 33 HOH HOH . 
S 7 HOH B 23 1023 23 HOH HOH . 
S 7 HOH B 24 1024 55 HOH HOH . 
S 7 HOH B 25 1025 38 HOH HOH . 
S 7 HOH B 26 1026 29 HOH HOH . 
S 7 HOH B 27 1027 37 HOH HOH . 
S 7 HOH B 28 1028 5 HOH HOH . 
S 7 HOH B 29 1029 24 HOH HOH . 
S 7 HOH B 30 1030 50 HOH HOH . 
S 7 HOH B 31 1031 30 HOH HOH . 
S 7 HOH B 32 1032 59 HOH HOH . 
S 7 HOH B 33 1033 10 HOH HOH . 
S 7 HOH B 34 1034 60 HOH HOH . 
S 7 HOH B 35 1035 15 HOH HOH . 
S 7 HOH B 36 1036 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 WJO . . . J 2 -7.376 -40.15 -32.817 1 55.66 ? N1 WJO 901 B 1 
HETATM 2 N N3 WJO . . . J 2 -13.533 -33.82 -38.398 1 121.81 ? N3 WJO 901 B 1 
HETATM 3 C C4 WJO . . . J 2 -8.011 -39.165 -33.188 1 63.15 ? C4 WJO 901 B 1 
HETATM 4 C C5 WJO . . . J 2 -8.662 -39.261 -34.626 1 60.61 ? C5 WJO 901 B 1 
HETATM 5 C C6 WJO . . . J 2 -8.054 -38.739 -35.793 1 53.39 ? C6 WJO 901 B 1 
HETATM 6 C C7 WJO . . . J 2 -8.692 -38.914 -37.046 1 53.45 ? C7 WJO 901 B 1 
HETATM 7 C C8 WJO . . . J 2 -9.938 -39.595 -37.132 1 64.56 ? C8 WJO 901 B 1 
HETATM 8 C C10 WJO . . . J 2 -11.34 -37.414 -39.134 1 89.43 ? C10 WJO 901 B 1 
HETATM 9 C C13 WJO . . . J 2 -12.764 -35.062 -38.656 1 113.95 ? C13 WJO 901 B 1 
HETATM 10 C C15 WJO . . . J 2 -14.19 -31.459 -39.014 1 117.26 ? C15 WJO 901 B 1 
HETATM 11 C C17 WJO . . . J 2 -14.647 -33.814 -37.415 1 114.08 ? C17 WJO 901 B 1 
HETATM 12 C C20 WJO . . . J 2 -10.535 -40.102 -35.98 1 58.6 ? C20 WJO 901 B 1 
HETATM 13 C C21 WJO . . . J 2 -9.898 -39.941 -34.742 1 55.94 ? C21 WJO 901 B 1 
HETATM 14 C C22 WJO . . . J 2 -6.269 -40.427 -33.716 1 46.28 ? C22 WJO 901 B 1 
HETATM 15 C C24 WJO . . . J 2 -5.912 -42.616 -32.821 1 42.58 ? C24 WJO 901 B 1 
HETATM 16 C C1 WJO . . . J 2 -7.091 -42.462 -31.977 1 45.15 ? C1 WJO 901 B 1 
HETATM 17 C C11 WJO . . . J 2 -10.805 -36.188 -39.559 1 88.02 ? C11 WJO 901 B 1 
HETATM 18 C C12 WJO . . . J 2 -11.519 -35.009 -39.317 1 103.23 ? C12 WJO 901 B 1 
HETATM 19 C C14 WJO . . . J 2 -13.82 -32.87 -39.496 1 119.3 ? C14 WJO 901 B 1 
HETATM 20 C C16 WJO . . . J 2 -15.373 -32.468 -37.238 1 100.81 ? C16 WJO 901 B 1 
HETATM 21 C C18 WJO . . . J 2 -13.282 -36.301 -38.235 1 106.58 ? C18 WJO 901 B 1 
HETATM 22 C C19 WJO . . . J 2 -12.579 -37.486 -38.48 1 84.17 ? C19 WJO 901 B 1 
HETATM 23 C C2 WJO . . . J 2 -8.162 -41.427 -32.545 1 46.51 ? C2 WJO 901 B 1 
HETATM 24 C C23 WJO . . . J 2 -5.286 -41.369 -33.086 1 49.83 ? C23 WJO 901 B 1 
HETATM 25 C C3 WJO . . . J 2 -9.253 -41.288 -31.576 1 45.84 ? C3 WJO 901 B 1 
HETATM 26 C C9 WJO . . . J 2 -10.711 -39.828 -38.465 1 75.2 ? C9 WJO 901 B 1 
HETATM 27 N N2 WJO . . . J 2 -10.579 -38.67 -39.38 1 90.65 ? N2 WJO 901 B 1 
HETATM 28 O O1 WJO . . . J 2 -7.592 -43.768 -31.675 1 36.71 ? O1 WJO 901 B 1 
HETATM 29 O O2 WJO . . . J 2 -8.849 -40.544 -30.434 1 48.11 ? O2 WJO 901 B 1 
HETATM 30 O O3 WJO . . . J 2 -14.618 -31.387 -37.68 1 110.12 ? O3 WJO 901 B 1 
HETATM 31 O O4 WJO . . . J 2 -4.091 -41.484 -33.969 1 54.12 ? O4 WJO 901 B 1 
HETATM 32 O O5 WJO . . . J 2 -5.075 -43.489 -31.933 1 39.42 ? O5 WJO 901 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           32 
#