data_8EHZ # _model_server_result.job_id hT3-r2OCMCo-zLGAr8qaig _model_server_result.datetime_utc '2024-11-21 23:51:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ehz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 8EHZ # _exptl.entry_id 8EHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.214 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-(1,4-phenylene)diacetamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8EHZ _cell.length_a 63.209 _cell.length_b 63.209 _cell.length_c 69.816 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 C ACE 6 1_555 A N CYS 2 C CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A SG CYS 2 C CYS 7 1_555 E CH WHL . C WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? covale ? covale3 A SG CYS 9 C CYS 14 1_555 E CK WHL . C WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? covale ? covale4 B C ACE 1 D ACE 6 1_555 B N CYS 2 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B SG CYS 2 D CYS 7 1_555 F CH WHL . D WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? covale ? covale6 B SG CYS 9 D CYS 14 1_555 F CK WHL . D WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? # _chem_comp.formula 'C10 H12 N2 O2' _chem_comp.formula_weight 192.214 _chem_comp.id WHL _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-(1,4-phenylene)diacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CK CJ WHL sing 384 n n CJ NB WHL sing 385 n n CJ OA WHL doub 386 n n NB CC WHL sing 387 n n CC CB WHL doub 388 n y CC CD WHL sing 389 n y CB CA WHL sing 390 n y CD CE WHL doub 391 n y CA CF WHL doub 392 n y CE CF WHL sing 393 n y CF NA WHL sing 394 n n OB CG WHL doub 395 n n NA CG WHL sing 396 n n CG CH WHL sing 397 n n CA H1 WHL sing 398 n n CB H2 WHL sing 399 n n NB H3 WHL sing 400 n n CD H4 WHL sing 401 n n CE H5 WHL sing 402 n n CH H6 WHL sing 403 n n CH H7 WHL sing 404 n n CH H8 WHL sing 405 n n CK H9 WHL sing 406 n n CK H10 WHL sing 407 n n CK H11 WHL sing 408 n n NA H12 WHL sing 409 n n # _atom_sites.entry_id 8EHZ _atom_sites.fract_transf_matrix[1][1] 0.015821 _atom_sites.fract_transf_matrix[1][2] 0.009134 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 WHL C 1 101 101 WHL WHL . F 3 WHL D 1 101 101 WHL WHL . G 4 HOH C 1 201 1 HOH HOH . H 4 HOH D 1 201 18 HOH HOH . H 4 HOH D 2 202 6 HOH HOH . I 4 HOH A 1 201 15 HOH HOH . I 4 HOH A 2 202 9 HOH HOH . I 4 HOH A 3 203 13 HOH HOH . I 4 HOH A 4 204 2 HOH HOH . I 4 HOH A 5 205 4 HOH HOH . I 4 HOH A 6 206 7 HOH HOH . I 4 HOH A 7 207 3 HOH HOH . I 4 HOH A 8 208 5 HOH HOH . I 4 HOH A 9 209 8 HOH HOH . I 4 HOH A 10 210 17 HOH HOH . I 4 HOH A 11 211 12 HOH HOH . J 4 HOH B 1 201 14 HOH HOH . J 4 HOH B 2 202 11 HOH HOH . J 4 HOH B 3 203 16 HOH HOH . J 4 HOH B 4 204 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA WHL . . . E 3 -12.276 -9.167 7.096 1 69.45 ? CA WHL 101 C 1 HETATM 2 C CB WHL . . . E 3 -11.312 -9.52 6.155 1 67.77 ? CB WHL 101 C 1 HETATM 3 N NB WHL . . . E 3 -10.432 -9.276 3.809 1 58.91 ? NB WHL 101 C 1 HETATM 4 O OB WHL . . . E 3 -13.114 -7.911 9.631 1 72.92 ? OB WHL 101 C 1 HETATM 5 C CG WHL . . . E 3 -14.158 -7.694 9.117 1 74.37 ? CG WHL 101 C 1 HETATM 6 C CD WHL . . . E 3 -12.395 -8.108 4.552 1 62.37 ? CD WHL 101 C 1 HETATM 7 C CE WHL . . . E 3 -13.35 -7.758 5.483 1 61.82 ? CE WHL 101 C 1 HETATM 8 C CH WHL . . . E 3 -15.34 -7.233 9.97 1 74.55 ? CH WHL 101 C 1 HETATM 9 C CC WHL . . . E 3 -11.377 -8.983 4.876 1 60.99 ? CC WHL 101 C 1 HETATM 10 C CF WHL . . . E 3 -13.298 -8.282 6.758 1 67.48 ? CF WHL 101 C 1 HETATM 11 C CJ WHL . . . E 3 -9.088 -9.814 3.941 1 62 ? CJ WHL 101 C 1 HETATM 12 C CK WHL . . . E 3 -8.282 -10.022 2.659 1 64.21 ? CK WHL 101 C 1 HETATM 13 N NA WHL . . . E 3 -14.345 -7.862 7.682 1 69.79 ? NA WHL 101 C 1 HETATM 14 O OA WHL . . . E 3 -8.621 -10.086 4.995 1 73.79 ? OA WHL 101 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #