data_8EI1 # _model_server_result.job_id feZytL8u4X_dOuKYV14OcA _model_server_result.datetime_utc '2024-10-10 09:25:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ei1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":101}' # _entry.id 8EI1 # _exptl.entry_id 8EI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.214 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-(1,4-phenylene)diacetamide" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EI1 _cell.length_a 99.65 _cell.length_b 99.65 _cell.length_c 366.49 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C ACE 1 E ACE 0 1_555 E N ASP 2 E ASP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 E SG CYS 8 E CYS 7 1_555 I CH WHL . E WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? covale ? covale3 E SG CYS 15 E CYS 14 1_555 I CK WHL . E WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? covale ? covale4 E C PHE 18 E PHE 17 1_555 E N NH2 19 E NH2 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 F C ACE 1 F ACE 0 1_555 F N ASP 2 F ASP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 F SG CYS 8 F CYS 7 1_555 J CH WHL . F WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale7 F SG CYS 15 F CYS 14 1_555 J CK WHL . F WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale8 F C PHE 18 F PHE 17 1_555 F N NH2 19 F NH2 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale9 G SG CYS 8 G CYS 7 1_555 K CH WHL . G WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? covale ? covale10 G SG CYS 15 G CYS 14 1_555 K CK WHL . G WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? covale ? covale11 H SG CYS 8 H CYS 7 1_555 L CH WHL . H WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? covale ? covale12 H SG CYS 15 H CYS 14 1_555 L CK WHL . H WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? # _chem_comp.formula 'C10 H12 N2 O2' _chem_comp.formula_weight 192.214 _chem_comp.id WHL _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-(1,4-phenylene)diacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CK CJ WHL sing 382 n n CJ NB WHL sing 383 n n CJ OA WHL doub 384 n n NB CC WHL sing 385 n n CC CB WHL doub 386 n y CC CD WHL sing 387 n y CB CA WHL sing 388 n y CD CE WHL doub 389 n y CA CF WHL doub 390 n y CE CF WHL sing 391 n y CF NA WHL sing 392 n n OB CG WHL doub 393 n n NA CG WHL sing 394 n n CG CH WHL sing 395 n n CA H1 WHL sing 396 n n CB H2 WHL sing 397 n n NB H3 WHL sing 398 n n CD H4 WHL sing 399 n n CE H5 WHL sing 400 n n CH H6 WHL sing 401 n n CH H7 WHL sing 402 n n CH H8 WHL sing 403 n n CK H9 WHL sing 404 n n CK H10 WHL sing 405 n n CK H11 WHL sing 406 n n NA H12 WHL sing 407 n n # _atom_sites.entry_id 8EI1 _atom_sites.fract_transf_matrix[1][1] 0.010035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 WHL E 1 101 101 WHL WHL . J 3 WHL F 1 101 101 WHL WHL . K 3 WHL G 1 101 101 WHL WHL . L 3 WHL H 1 101 101 WHL WHL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA WHL . . . J 3 30.402 -65.763 -95.594 1 98.62 ? CA WHL 101 F 1 HETATM 2 C CB WHL . . . J 3 29.305 -66.153 -94.853 1 96.14 ? CB WHL 101 F 1 HETATM 3 N NB WHL . . . J 3 27.1 -65.864 -93.934 1 83.56 ? NB WHL 101 F 1 HETATM 4 O OB WHL . . . J 3 31.364 -61.979 -97.488 1 116.98 ? OB WHL 101 F 1 HETATM 5 C CG WHL . . . J 3 32.031 -62.953 -97.571 1 106.79 ? CG WHL 101 F 1 HETATM 6 C CD WHL . . . J 3 28.197 -64.108 -95.4 1 78.65 ? CD WHL 101 F 1 HETATM 7 C CE WHL . . . J 3 29.306 -63.709 -96.152 1 90.2 ? CE WHL 101 F 1 HETATM 8 C CH WHL . . . J 3 33.365 -62.871 -98.311 1 116.52 ? CH WHL 101 F 1 HETATM 9 C CC WHL . . . J 3 28.195 -65.338 -94.742 1 90 ? CC WHL 101 F 1 HETATM 10 C CF WHL . . . J 3 30.416 -64.545 -96.248 1 99.86 ? CF WHL 101 F 1 HETATM 11 C CJ WHL . . . J 3 25.839 -65.199 -93.666 1 78.6 ? CJ WHL 101 F 1 HETATM 12 C CK WHL . . . J 3 24.813 -65.926 -92.797 1 79.39 ? CK WHL 101 F 1 HETATM 13 N NA WHL . . . J 3 31.631 -64.237 -97.001 1 95.56 ? NA WHL 101 F 1 HETATM 14 O OA WHL . . . J 3 25.594 -64.125 -94.102 1 96.31 ? OA WHL 101 F 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #