data_8EI4 # _model_server_result.job_id E701cbJ2BfD6XKameJ_hrg _model_server_result.datetime_utc '2024-11-21 23:50:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ei4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 8EI4 # _exptl.entry_id 8EI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 112.09 _cell.angle_beta 99.61 _cell.angle_gamma 102.51 _cell.entry_id 8EI4 _cell.length_a 45.42 _cell.length_b 51.21 _cell.length_c 58.64 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 8 B CYS 7 1_555 G CH WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale2 B SG CYS 15 B CYS 14 1_555 G CK WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 8EI4 _atom_sites.fract_transf_matrix[1][1] 0.022017 _atom_sites.fract_transf_matrix[1][2] 0.004885 _atom_sites.fract_transf_matrix[1][3] 0.006439 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020002 _atom_sites.fract_transf_matrix[2][3] 0.009478 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 1001 1 EDO EDO . D 3 EDO A 1 1002 2 EDO EDO . E 3 EDO A 1 1003 3 EDO EDO . F 3 EDO A 1 1004 5 EDO EDO . G 4 WHL B 1 101 101 WHL WHL . H 5 HOH A 1 1101 22 HOH HOH . H 5 HOH A 2 1102 27 HOH HOH . H 5 HOH A 3 1103 17 HOH HOH . H 5 HOH A 4 1104 31 HOH HOH . H 5 HOH A 5 1105 18 HOH HOH . H 5 HOH A 6 1106 1 HOH HOH . H 5 HOH A 7 1107 36 HOH HOH . H 5 HOH A 8 1108 40 HOH HOH . H 5 HOH A 9 1109 3 HOH HOH . H 5 HOH A 10 1110 19 HOH HOH . H 5 HOH A 11 1111 21 HOH HOH . H 5 HOH A 12 1112 37 HOH HOH . H 5 HOH A 13 1113 26 HOH HOH . H 5 HOH A 14 1114 28 HOH HOH . H 5 HOH A 15 1115 9 HOH HOH . H 5 HOH A 16 1116 6 HOH HOH . H 5 HOH A 17 1117 5 HOH HOH . H 5 HOH A 18 1118 8 HOH HOH . H 5 HOH A 19 1119 30 HOH HOH . H 5 HOH A 20 1120 32 HOH HOH . H 5 HOH A 21 1121 24 HOH HOH . H 5 HOH A 22 1122 29 HOH HOH . H 5 HOH A 23 1123 13 HOH HOH . H 5 HOH A 24 1124 10 HOH HOH . H 5 HOH A 25 1125 25 HOH HOH . H 5 HOH A 26 1126 38 HOH HOH . H 5 HOH A 27 1127 39 HOH HOH . H 5 HOH A 28 1128 20 HOH HOH . H 5 HOH A 29 1129 12 HOH HOH . H 5 HOH A 30 1130 14 HOH HOH . H 5 HOH A 31 1131 2 HOH HOH . H 5 HOH A 32 1132 16 HOH HOH . H 5 HOH A 33 1133 34 HOH HOH . H 5 HOH A 34 1134 7 HOH HOH . H 5 HOH A 35 1135 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -10.969 15.481 59.234 1 39.62 ? C1 EDO 1002 A 1 HETATM 2 O O1 EDO . . . D 3 -10.674 14.31 60.055 1 41.41 ? O1 EDO 1002 A 1 HETATM 3 C C2 EDO . . . D 3 -12.386 15.393 58.638 1 40.02 ? C2 EDO 1002 A 1 HETATM 4 O O2 EDO . . . D 3 -12.762 16.54 57.85 1 34.49 ? O2 EDO 1002 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #