data_8EI7
#
_model_server_result.job_id            J231l3rsxJ3fZCpXbWQ39Q 
_model_server_result.datetime_utc      '2024-10-10 06:29:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ei7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    8EI7 
#
_exptl.entry_id    8EI7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.9 
_cell.angle_gamma         90 
_cell.entry_id            8EI7 
_cell.length_a            62.16 
_cell.length_b            64.3 
_cell.length_c            103.69 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EI7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,T,U,W 1 1 
B,M,N,O,P,Q,R,S,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C ACE 1 C ACE 0 1_555 C N ASP 2 C ASP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 C SG CYS 8 C CYS 7 1_555 T CH WHL . C WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? 
covale ? covale3 C SG CYS 15 C CYS 14 1_555 T CK WHL . C WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? 
covale ? covale4 C C HIS 18 C HIS 17 1_555 C N NH2 19 C NH2 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
metalc ? metalc1 A OH TYR 98 A TYR 587 1_555 L ZN ZN . A ZN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc2 A O THR 310 A THR 799 1_555 L ZN ZN . A ZN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc3 A OD1 ASN 351 A ASN 840 1_555 L ZN ZN . A ZN 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc4 B O THR 310 B THR 799 1_555 S ZN ZN . B ZN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc5 B O THR 348 B THR 837 1_555 S ZN ZN . B ZN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc6 B OD1 ASN 351 B ASN 840 1_555 S ZN ZN . B ZN 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 144 n n 
C1 C2 GOL sing 145 n n 
C1 H11 GOL sing 146 n n 
C1 H12 GOL sing 147 n n 
O1 HO1 GOL sing 148 n n 
C2 O2 GOL sing 149 n n 
C2 C3 GOL sing 150 n n 
C2 H2 GOL sing 151 n n 
O2 HO2 GOL sing 152 n n 
C3 O3 GOL sing 153 n n 
C3 H31 GOL sing 154 n n 
C3 H32 GOL sing 155 n n 
O3 HO3 GOL sing 156 n n 
#
_atom_sites.entry_id                     8EI7 
_atom_sites.fract_transf_matrix[1][1]    0.016088 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000254 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015552 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009645 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 GOL A 1 901 1 GOL GOL . 
E 3 GOL A 1 902 2 GOL GOL . 
F 4 EDO A 1 903 1 EDO EDO . 
G 4 EDO A 1 904 4 EDO EDO . 
H 4 EDO A 1 905 5 EDO EDO . 
I 4 EDO A 1 906 8 EDO EDO . 
J 4 EDO A 1 907 9 EDO EDO . 
K 4 EDO A 1 908 10 EDO EDO . 
L 5 ZN A 1 909 2 ZN ZN . 
M 6 PGE B 1 901 1 PGE PGE . 
N 7 PEG B 1 902 1 PEG PEG . 
O 4 EDO B 1 903 2 EDO EDO . 
P 4 EDO B 1 904 3 EDO EDO . 
Q 4 EDO B 1 905 6 EDO EDO . 
R 4 EDO B 1 906 7 EDO EDO . 
S 5 ZN B 1 907 1 ZN ZN . 
T 8 WHL C 1 101 101 WHL WHL . 
U 9 HOH A 1 1001 45 HOH HOH . 
U 9 HOH A 2 1002 127 HOH HOH . 
U 9 HOH A 3 1003 170 HOH HOH . 
U 9 HOH A 4 1004 195 HOH HOH . 
U 9 HOH A 5 1005 59 HOH HOH . 
U 9 HOH A 6 1006 80 HOH HOH . 
U 9 HOH A 7 1007 145 HOH HOH . 
U 9 HOH A 8 1008 46 HOH HOH . 
U 9 HOH A 9 1009 152 HOH HOH . 
U 9 HOH A 10 1010 134 HOH HOH . 
U 9 HOH A 11 1011 6 HOH HOH . 
U 9 HOH A 12 1012 107 HOH HOH . 
U 9 HOH A 13 1013 128 HOH HOH . 
U 9 HOH A 14 1014 146 HOH HOH . 
U 9 HOH A 15 1015 206 HOH HOH . 
U 9 HOH A 16 1016 165 HOH HOH . 
U 9 HOH A 17 1017 70 HOH HOH . 
U 9 HOH A 18 1018 94 HOH HOH . 
U 9 HOH A 19 1019 56 HOH HOH . 
U 9 HOH A 20 1020 219 HOH HOH . 
U 9 HOH A 21 1021 92 HOH HOH . 
U 9 HOH A 22 1022 112 HOH HOH . 
U 9 HOH A 23 1023 121 HOH HOH . 
U 9 HOH A 24 1024 168 HOH HOH . 
U 9 HOH A 25 1025 184 HOH HOH . 
U 9 HOH A 26 1026 30 HOH HOH . 
U 9 HOH A 27 1027 66 HOH HOH . 
U 9 HOH A 28 1028 53 HOH HOH . 
U 9 HOH A 29 1029 137 HOH HOH . 
U 9 HOH A 30 1030 22 HOH HOH . 
U 9 HOH A 31 1031 72 HOH HOH . 
U 9 HOH A 32 1032 58 HOH HOH . 
U 9 HOH A 33 1033 42 HOH HOH . 
U 9 HOH A 34 1034 29 HOH HOH . 
U 9 HOH A 35 1035 3 HOH HOH . 
U 9 HOH A 36 1036 102 HOH HOH . 
U 9 HOH A 37 1037 209 HOH HOH . 
U 9 HOH A 38 1038 133 HOH HOH . 
U 9 HOH A 39 1039 191 HOH HOH . 
U 9 HOH A 40 1040 140 HOH HOH . 
U 9 HOH A 41 1041 161 HOH HOH . 
U 9 HOH A 42 1042 74 HOH HOH . 
U 9 HOH A 43 1043 177 HOH HOH . 
U 9 HOH A 44 1044 51 HOH HOH . 
U 9 HOH A 45 1045 109 HOH HOH . 
U 9 HOH A 46 1046 183 HOH HOH . 
U 9 HOH A 47 1047 84 HOH HOH . 
U 9 HOH A 48 1048 85 HOH HOH . 
U 9 HOH A 49 1049 14 HOH HOH . 
U 9 HOH A 50 1050 111 HOH HOH . 
U 9 HOH A 51 1051 163 HOH HOH . 
U 9 HOH A 52 1052 208 HOH HOH . 
U 9 HOH A 53 1053 69 HOH HOH . 
U 9 HOH A 54 1054 79 HOH HOH . 
U 9 HOH A 55 1055 87 HOH HOH . 
U 9 HOH A 56 1056 104 HOH HOH . 
U 9 HOH A 57 1057 90 HOH HOH . 
U 9 HOH A 58 1058 100 HOH HOH . 
U 9 HOH A 59 1059 38 HOH HOH . 
U 9 HOH A 60 1060 44 HOH HOH . 
U 9 HOH A 61 1061 13 HOH HOH . 
U 9 HOH A 62 1062 40 HOH HOH . 
U 9 HOH A 63 1063 178 HOH HOH . 
U 9 HOH A 64 1064 136 HOH HOH . 
U 9 HOH A 65 1065 32 HOH HOH . 
U 9 HOH A 66 1066 33 HOH HOH . 
U 9 HOH A 67 1067 86 HOH HOH . 
U 9 HOH A 68 1068 31 HOH HOH . 
U 9 HOH A 69 1069 158 HOH HOH . 
U 9 HOH A 70 1070 9 HOH HOH . 
U 9 HOH A 71 1071 78 HOH HOH . 
U 9 HOH A 72 1072 214 HOH HOH . 
U 9 HOH A 73 1073 5 HOH HOH . 
U 9 HOH A 74 1074 116 HOH HOH . 
U 9 HOH A 75 1075 39 HOH HOH . 
U 9 HOH A 76 1076 154 HOH HOH . 
U 9 HOH A 77 1077 155 HOH HOH . 
U 9 HOH A 78 1078 126 HOH HOH . 
U 9 HOH A 79 1079 185 HOH HOH . 
U 9 HOH A 80 1080 160 HOH HOH . 
U 9 HOH A 81 1081 130 HOH HOH . 
U 9 HOH A 82 1082 190 HOH HOH . 
U 9 HOH A 83 1083 159 HOH HOH . 
U 9 HOH A 84 1084 35 HOH HOH . 
U 9 HOH A 85 1085 17 HOH HOH . 
U 9 HOH A 86 1086 222 HOH HOH . 
U 9 HOH A 87 1087 212 HOH HOH . 
U 9 HOH A 88 1088 77 HOH HOH . 
U 9 HOH A 89 1089 95 HOH HOH . 
U 9 HOH A 90 1090 21 HOH HOH . 
U 9 HOH A 91 1091 192 HOH HOH . 
U 9 HOH A 92 1092 139 HOH HOH . 
U 9 HOH A 93 1093 193 HOH HOH . 
U 9 HOH A 94 1094 28 HOH HOH . 
U 9 HOH A 95 1095 65 HOH HOH . 
U 9 HOH A 96 1096 4 HOH HOH . 
U 9 HOH A 97 1097 186 HOH HOH . 
U 9 HOH A 98 1098 153 HOH HOH . 
U 9 HOH A 99 1099 48 HOH HOH . 
U 9 HOH A 100 1100 187 HOH HOH . 
U 9 HOH A 101 1101 138 HOH HOH . 
U 9 HOH A 102 1102 223 HOH HOH . 
U 9 HOH A 103 1103 172 HOH HOH . 
U 9 HOH A 104 1104 173 HOH HOH . 
U 9 HOH A 105 1105 162 HOH HOH . 
U 9 HOH A 106 1106 174 HOH HOH . 
U 9 HOH A 107 1107 76 HOH HOH . 
U 9 HOH A 108 1108 151 HOH HOH . 
U 9 HOH A 109 1109 147 HOH HOH . 
U 9 HOH A 110 1110 81 HOH HOH . 
V 9 HOH B 1 1001 218 HOH HOH . 
V 9 HOH B 2 1002 175 HOH HOH . 
V 9 HOH B 3 1003 188 HOH HOH . 
V 9 HOH B 4 1004 211 HOH HOH . 
V 9 HOH B 5 1005 196 HOH HOH . 
V 9 HOH B 6 1006 25 HOH HOH . 
V 9 HOH B 7 1007 37 HOH HOH . 
V 9 HOH B 8 1008 99 HOH HOH . 
V 9 HOH B 9 1009 144 HOH HOH . 
V 9 HOH B 10 1010 27 HOH HOH . 
V 9 HOH B 11 1011 55 HOH HOH . 
V 9 HOH B 12 1012 52 HOH HOH . 
V 9 HOH B 13 1013 88 HOH HOH . 
V 9 HOH B 14 1014 202 HOH HOH . 
V 9 HOH B 15 1015 131 HOH HOH . 
V 9 HOH B 16 1016 20 HOH HOH . 
V 9 HOH B 17 1017 23 HOH HOH . 
V 9 HOH B 18 1018 62 HOH HOH . 
V 9 HOH B 19 1019 67 HOH HOH . 
V 9 HOH B 20 1020 105 HOH HOH . 
V 9 HOH B 21 1021 91 HOH HOH . 
V 9 HOH B 22 1022 63 HOH HOH . 
V 9 HOH B 23 1023 157 HOH HOH . 
V 9 HOH B 24 1024 189 HOH HOH . 
V 9 HOH B 25 1025 200 HOH HOH . 
V 9 HOH B 26 1026 26 HOH HOH . 
V 9 HOH B 27 1027 54 HOH HOH . 
V 9 HOH B 28 1028 113 HOH HOH . 
V 9 HOH B 29 1029 43 HOH HOH . 
V 9 HOH B 30 1030 205 HOH HOH . 
V 9 HOH B 31 1031 61 HOH HOH . 
V 9 HOH B 32 1032 36 HOH HOH . 
V 9 HOH B 33 1033 114 HOH HOH . 
V 9 HOH B 34 1034 73 HOH HOH . 
V 9 HOH B 35 1035 34 HOH HOH . 
V 9 HOH B 36 1036 120 HOH HOH . 
V 9 HOH B 37 1037 180 HOH HOH . 
V 9 HOH B 38 1038 132 HOH HOH . 
V 9 HOH B 39 1039 194 HOH HOH . 
V 9 HOH B 40 1040 156 HOH HOH . 
V 9 HOH B 41 1041 129 HOH HOH . 
V 9 HOH B 42 1042 220 HOH HOH . 
V 9 HOH B 43 1043 75 HOH HOH . 
V 9 HOH B 44 1044 118 HOH HOH . 
V 9 HOH B 45 1045 89 HOH HOH . 
V 9 HOH B 46 1046 83 HOH HOH . 
V 9 HOH B 47 1047 68 HOH HOH . 
V 9 HOH B 48 1048 117 HOH HOH . 
V 9 HOH B 49 1049 98 HOH HOH . 
V 9 HOH B 50 1050 47 HOH HOH . 
V 9 HOH B 51 1051 108 HOH HOH . 
V 9 HOH B 52 1052 110 HOH HOH . 
V 9 HOH B 53 1053 106 HOH HOH . 
V 9 HOH B 54 1054 210 HOH HOH . 
V 9 HOH B 55 1055 19 HOH HOH . 
V 9 HOH B 56 1056 181 HOH HOH . 
V 9 HOH B 57 1057 57 HOH HOH . 
V 9 HOH B 58 1058 217 HOH HOH . 
V 9 HOH B 59 1059 1 HOH HOH . 
V 9 HOH B 60 1060 15 HOH HOH . 
V 9 HOH B 61 1061 213 HOH HOH . 
V 9 HOH B 62 1062 198 HOH HOH . 
V 9 HOH B 63 1063 60 HOH HOH . 
V 9 HOH B 64 1064 203 HOH HOH . 
V 9 HOH B 65 1065 2 HOH HOH . 
V 9 HOH B 66 1066 11 HOH HOH . 
V 9 HOH B 67 1067 64 HOH HOH . 
V 9 HOH B 68 1068 207 HOH HOH . 
V 9 HOH B 69 1069 148 HOH HOH . 
V 9 HOH B 70 1070 50 HOH HOH . 
V 9 HOH B 71 1071 16 HOH HOH . 
V 9 HOH B 72 1072 101 HOH HOH . 
V 9 HOH B 73 1073 221 HOH HOH . 
V 9 HOH B 74 1074 124 HOH HOH . 
V 9 HOH B 75 1075 125 HOH HOH . 
V 9 HOH B 76 1076 122 HOH HOH . 
V 9 HOH B 77 1077 123 HOH HOH . 
W 9 HOH C 1 201 41 HOH HOH . 
W 9 HOH C 2 202 97 HOH HOH . 
W 9 HOH C 3 203 167 HOH HOH . 
W 9 HOH C 4 204 93 HOH HOH . 
W 9 HOH C 5 205 71 HOH HOH . 
W 9 HOH C 6 206 150 HOH HOH . 
W 9 HOH C 7 207 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 28.461 16.542 -2.731 1 37.44 ? C1 GOL 901 A 1 
HETATM 2 O O1 GOL . . . D 3 29.167 15.89 -3.69 1 37.8 ? O1 GOL 901 A 1 
HETATM 3 C C2 GOL . . . D 3 27.741 17.636 -3.498 1 40.59 ? C2 GOL 901 A 1 
HETATM 4 O O2 GOL . . . D 3 26.973 17.105 -4.518 1 42.88 ? O2 GOL 901 A 1 
HETATM 5 C C3 GOL . . . D 3 26.951 18.362 -2.436 1 41.11 ? C3 GOL 901 A 1 
HETATM 6 O O3 GOL . . . D 3 26.679 19.693 -2.927 1 42.92 ? O3 GOL 901 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#