data_8EIO # _model_server_result.job_id jkda0wIRisVsNNlipSwtlw _model_server_result.datetime_utc '2024-11-23 10:03:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1503}' # _entry.id 8EIO # _exptl.entry_id 8EIO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EIO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 465 A THR 465 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc2 A OE1 GLN 493 A GLN 493 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc3 A OG SER 1250 A SER 1251 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 A OE1 GLN 1290 A GLN 1291 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 C MG MG . A MG 1501 1_555 E O3G ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc6 C MG MG . A MG 1501 1_555 E O2B ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc7 D MG MG . A MG 1502 1_555 F O2B ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc8 D MG MG . A MG 1502 1_555 F O3G ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8EIO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1501 1 MG MG . D 3 MG A 1 1502 2 MG MG . E 4 ATP A 1 1503 3 ATP ATP . F 4 ATP A 1 1504 4 ATP ATP . G 5 CLR A 1 1505 2601 CLR CLR . H 6 D12 A 1 1506 3201 D12 ACC . I 7 VX8 A 1 1507 1 VX8 VX8 . J 8 WJX A 1 1508 1701 WJX VX4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 157.277 151.348 94.852 1 55.76 ? PG ATP 1503 A 1 HETATM 2 O O1G ATP . . . E 4 156.873 151.454 93.434 1 55.41 ? O1G ATP 1503 A 1 HETATM 3 O O2G ATP . . . E 4 157.168 149.921 95.375 1 61.1 ? O2G ATP 1503 A 1 HETATM 4 O O3G ATP . . . E 4 156.464 152.268 95.761 1 50.46 ? O3G ATP 1503 A 1 HETATM 5 P PB ATP . . . E 4 159.511 153.186 95.013 1 52.32 ? PB ATP 1503 A 1 HETATM 6 O O1B ATP . . . E 4 159.972 153.53 93.658 1 60.7 ? O1B ATP 1503 A 1 HETATM 7 O O2B ATP . . . E 4 158.551 154.171 95.658 1 58.63 ? O2B ATP 1503 A 1 HETATM 8 O O3B ATP . . . E 4 158.796 151.766 95.048 1 55.95 ? O3B ATP 1503 A 1 HETATM 9 P PA ATP . . . E 4 160.785 152.586 97.572 1 59.42 ? PA ATP 1503 A 1 HETATM 10 O O1A ATP . . . E 4 161.401 153.882 97.938 1 45.13 ? O1A ATP 1503 A 1 HETATM 11 O O2A ATP . . . E 4 159.689 153.372 98.358 1 61.2 ? O2A ATP 1503 A 1 HETATM 12 O O3A ATP . . . E 4 160.726 152.974 96.024 1 51.56 ? O3A ATP 1503 A 1 HETATM 13 O O5' ATP . . . E 4 162.245 152.36 98.243 1 56.9 ? O5' ATP 1503 A 1 HETATM 14 C C5' ATP . . . E 4 163.433 152.255 97.435 1 54.61 ? C5' ATP 1503 A 1 HETATM 15 C C4' ATP . . . E 4 164.415 151.302 98.076 1 54.78 ? C4' ATP 1503 A 1 HETATM 16 O O4' ATP . . . E 4 164.689 151.701 99.438 1 51.94 ? O4' ATP 1503 A 1 HETATM 17 C C3' ATP . . . E 4 163.975 149.842 98.15 1 52.73 ? C3' ATP 1503 A 1 HETATM 18 O O3' ATP . . . E 4 165.07 148.95 97.986 1 61.97 ? O3' ATP 1503 A 1 HETATM 19 C C2' ATP . . . E 4 163.373 149.742 99.552 1 52.36 ? C2' ATP 1503 A 1 HETATM 20 O O2' ATP . . . E 4 163.48 148.425 100.074 1 57.97 ? O2' ATP 1503 A 1 HETATM 21 C C1' ATP . . . E 4 164.274 150.692 100.339 1 51.19 ? C1' ATP 1503 A 1 HETATM 22 N N9 ATP . . . E 4 163.613 151.339 101.467 1 57.6 ? N9 ATP 1503 A 1 HETATM 23 C C8 ATP . . . E 4 162.411 151.994 101.453 1 55.68 ? C8 ATP 1503 A 1 HETATM 24 N N7 ATP . . . E 4 162.063 152.492 102.617 1 56.47 ? N7 ATP 1503 A 1 HETATM 25 C C5 ATP . . . E 4 163.11 152.142 103.45 1 59.3 ? C5 ATP 1503 A 1 HETATM 26 C C6 ATP . . . E 4 163.359 152.38 104.818 1 57.19 ? C6 ATP 1503 A 1 HETATM 27 N N6 ATP . . . E 4 162.525 153.05 105.62 1 54.88 ? N6 ATP 1503 A 1 HETATM 28 N N1 ATP . . . E 4 164.506 151.898 105.341 1 53.52 ? N1 ATP 1503 A 1 HETATM 29 C C2 ATP . . . E 4 165.341 151.223 104.546 1 51.99 ? C2 ATP 1503 A 1 HETATM 30 N N3 ATP . . . E 4 165.215 150.938 103.249 1 50.62 ? N3 ATP 1503 A 1 HETATM 31 C C4 ATP . . . E 4 164.076 151.427 102.758 1 56.97 ? C4 ATP 1503 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #