data_8EIO # _model_server_result.job_id O8gOrDaI-EEWezdNnlc5qQ _model_server_result.datetime_utc '2024-11-23 09:51:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1507}' # _entry.id 8EIO # _exptl.entry_id 8EIO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 452.407 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Lumacaftor _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EIO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 465 A THR 465 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc2 A OE1 GLN 493 A GLN 493 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc3 A OG SER 1250 A SER 1251 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 A OE1 GLN 1290 A GLN 1291 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 C MG MG . A MG 1501 1_555 E O3G ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc6 C MG MG . A MG 1501 1_555 E O2B ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc7 D MG MG . A MG 1502 1_555 F O2B ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc8 D MG MG . A MG 1502 1_555 F O3G ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? # _chem_comp.formula 'C24 H18 F2 N2 O5' _chem_comp.formula_weight 452.407 _chem_comp.id VX8 _chem_comp.mon_nstd_flag . _chem_comp.name Lumacaftor _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-(6-{[1-(2,2-difluoro-2H-1,3-benzodioxol-5-yl)cyclopropane-1-carbonyl]amino}-3-methylpyridin-2-yl)benzoic acid;VX-809' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C7 VX8 doub 537 n n O1 C7 VX8 sing 538 n n C7 C6 VX8 sing 539 n n C18 C19 VX8 doub 540 n y C18 C17 VX8 sing 541 n y C19 C14 VX8 sing 542 n y C6 C8 VX8 doub 543 n y C6 C5 VX8 sing 544 n y C21 C13 VX8 sing 545 n n C21 C22 VX8 sing 546 n n C8 C9 VX8 sing 547 n y C17 O4 VX8 sing 548 n n C17 C16 VX8 doub 549 n y O4 C20 VX8 sing 550 n n C5 C4 VX8 doub 551 n y C9 C10 VX8 doub 552 n y C14 C13 VX8 sing 553 n n C14 C15 VX8 doub 554 n y C13 C22 VX8 sing 555 n n C13 C12 VX8 sing 556 n n F1 C20 VX8 sing 557 n n C4 C10 VX8 sing 558 n y C4 C3 VX8 sing 559 n n C12 O3 VX8 doub 560 n n C12 N2 VX8 sing 561 n n C16 C15 VX8 sing 562 n y C16 O5 VX8 sing 563 n n C20 F2 VX8 sing 564 n n C20 O5 VX8 sing 565 n n N1 C3 VX8 doub 566 n y N1 C11 VX8 sing 567 n y N2 C11 VX8 sing 568 n n C3 C2 VX8 sing 569 n y C11 C23 VX8 doub 570 n y C2 C1 VX8 sing 571 n n C2 C24 VX8 doub 572 n y C23 C24 VX8 sing 573 n y C1 H1 VX8 sing 574 n n C1 H2 VX8 sing 575 n n C1 H3 VX8 sing 576 n n C10 H4 VX8 sing 577 n n C15 H5 VX8 sing 578 n n C18 H6 VX8 sing 579 n n C19 H7 VX8 sing 580 n n C21 H8 VX8 sing 581 n n C21 H9 VX8 sing 582 n n C22 H10 VX8 sing 583 n n C22 H11 VX8 sing 584 n n C23 H12 VX8 sing 585 n n C24 H13 VX8 sing 586 n n C5 H14 VX8 sing 587 n n C8 H15 VX8 sing 588 n n C9 H16 VX8 sing 589 n n N2 H17 VX8 sing 590 n n O1 H18 VX8 sing 591 n n # _atom_sites.entry_id 8EIO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1501 1 MG MG . D 3 MG A 1 1502 2 MG MG . E 4 ATP A 1 1503 3 ATP ATP . F 4 ATP A 1 1504 4 ATP ATP . G 5 CLR A 1 1505 2601 CLR CLR . H 6 D12 A 1 1506 3201 D12 ACC . I 7 VX8 A 1 1507 1 VX8 VX8 . J 8 WJX A 1 1508 1701 WJX VX4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VX8 . . . I 7 166.673 167.366 146.892 1 59.63 ? C1 VX8 1507 A 1 HETATM 2 C C10 VX8 . . . I 7 165.893 164.036 144.803 1 60.39 ? C10 VX8 1507 A 1 HETATM 3 C C11 VX8 . . . I 7 162.58 166.669 145.735 1 64.87 ? C11 VX8 1507 A 1 HETATM 4 C C12 VX8 . . . I 7 160.159 167.382 145.125 1 61.3 ? C12 VX8 1507 A 1 HETATM 5 C C13 VX8 . . . I 7 158.774 166.895 144.642 1 60.67 ? C13 VX8 1507 A 1 HETATM 6 C C14 VX8 . . . I 7 158.856 165.369 144.374 1 65.58 ? C14 VX8 1507 A 1 HETATM 7 C C15 VX8 . . . I 7 158.38 164.454 145.307 1 59.19 ? C15 VX8 1507 A 1 HETATM 8 C C16 VX8 . . . I 7 158.468 163.072 145.055 1 57.96 ? C16 VX8 1507 A 1 HETATM 9 C C17 VX8 . . . I 7 159.032 162.625 143.882 1 60.39 ? C17 VX8 1507 A 1 HETATM 10 C C18 VX8 . . . I 7 159.519 163.549 142.938 1 57.5 ? C18 VX8 1507 A 1 HETATM 11 C C19 VX8 . . . I 7 159.43 164.912 143.19 1 60.54 ? C19 VX8 1507 A 1 HETATM 12 C C2 VX8 . . . I 7 165.205 167.119 146.482 1 63.58 ? C2 VX8 1507 A 1 HETATM 13 C C20 VX8 . . . I 7 158.271 160.806 145.024 1 60.02 ? C20 VX8 1507 A 1 HETATM 14 C C21 VX8 . . . I 7 158.317 167.741 143.449 1 56.75 ? C21 VX8 1507 A 1 HETATM 15 C C22 VX8 . . . I 7 157.743 168.013 144.836 1 53.85 ? C22 VX8 1507 A 1 HETATM 16 C C23 VX8 . . . I 7 162.857 167.566 146.76 1 62.99 ? C23 VX8 1507 A 1 HETATM 17 C C24 VX8 . . . I 7 164.179 167.797 147.137 1 63.55 ? C24 VX8 1507 A 1 HETATM 18 C C3 VX8 . . . I 7 164.84 166.235 145.463 1 62.01 ? C3 VX8 1507 A 1 HETATM 19 C C4 VX8 . . . I 7 165.884 165.42 144.666 1 59.37 ? C4 VX8 1507 A 1 HETATM 20 C C5 VX8 . . . I 7 166.781 166.034 143.798 1 59.7 ? C5 VX8 1507 A 1 HETATM 21 C C6 VX8 . . . I 7 167.698 165.262 143.091 1 66.18 ? C6 VX8 1507 A 1 HETATM 22 C C7 VX8 . . . I 7 168.702 165.925 142.143 1 67.36 ? C7 VX8 1507 A 1 HETATM 23 C C8 VX8 . . . I 7 167.709 163.882 143.237 1 62.79 ? C8 VX8 1507 A 1 HETATM 24 C C9 VX8 . . . I 7 166.806 163.268 144.093 1 60.22 ? C9 VX8 1507 A 1 HETATM 25 F F1 VX8 . . . I 7 157.066 160.276 144.659 1 60.83 ? F1 VX8 1507 A 1 HETATM 26 F F2 VX8 . . . I 7 158.999 159.885 145.72 1 60.64 ? F2 VX8 1507 A 1 HETATM 27 N N1 VX8 . . . I 7 163.576 166.04 145.135 1 62.06 ? N1 VX8 1507 A 1 HETATM 28 N N2 VX8 . . . I 7 161.212 166.377 145.295 1 62.56 ? N2 VX8 1507 A 1 HETATM 29 O O1 VX8 . . . I 7 168.751 167.183 142.048 1 67.9 ? O1 VX8 1507 A 1 HETATM 30 O O2 VX8 . . . I 7 169.485 165.206 141.464 1 64.64 ? O2 VX8 1507 A 1 HETATM 31 O O3 VX8 . . . I 7 160.352 168.532 145.345 1 61.48 ? O3 VX8 1507 A 1 HETATM 32 O O4 VX8 . . . I 7 158.993 161.209 143.883 1 59.57 ? O4 VX8 1507 A 1 HETATM 33 O O5 VX8 . . . I 7 158.064 161.95 145.817 1 62.33 ? O5 VX8 1507 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 198 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #