data_8EIQ # _model_server_result.job_id 4gDm8MoTfJY8bjRukkzBGQ _model_server_result.datetime_utc '2024-12-22 06:09:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eiq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1506}' # _entry.id 8EIQ # _exptl.entry_id 8EIQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 170.335 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EIQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EIQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 465 A THR 465 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc2 A OE1 GLN 493 A GLN 493 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc3 A OG SER 1250 A SER 1251 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc4 A OE1 GLN 1290 A GLN 1291 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc5 C MG MG . A MG 1501 1_555 E O3G ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc6 C MG MG . A MG 1501 1_555 E O2B ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc7 D MG MG . A MG 1502 1_555 F O2B ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc8 D MG MG . A MG 1502 1_555 F O3G ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 277 n n C1 H11 D12 sing 278 n n C1 H12 D12 sing 279 n n C1 H13 D12 sing 280 n n C2 C3 D12 sing 281 n n C2 H21 D12 sing 282 n n C2 H22 D12 sing 283 n n C3 C4 D12 sing 284 n n C3 H31 D12 sing 285 n n C3 H32 D12 sing 286 n n C4 C5 D12 sing 287 n n C4 H41 D12 sing 288 n n C4 H42 D12 sing 289 n n C5 C6 D12 sing 290 n n C5 H51 D12 sing 291 n n C5 H52 D12 sing 292 n n C6 C7 D12 sing 293 n n C6 H61 D12 sing 294 n n C6 H62 D12 sing 295 n n C7 C8 D12 sing 296 n n C7 H71 D12 sing 297 n n C7 H72 D12 sing 298 n n C8 C9 D12 sing 299 n n C8 H81 D12 sing 300 n n C8 H82 D12 sing 301 n n C9 C10 D12 sing 302 n n C9 H91 D12 sing 303 n n C9 H92 D12 sing 304 n n C10 C11 D12 sing 305 n n C10 H101 D12 sing 306 n n C10 H102 D12 sing 307 n n C11 C12 D12 sing 308 n n C11 H111 D12 sing 309 n n C11 H112 D12 sing 310 n n C12 H121 D12 sing 311 n n C12 H122 D12 sing 312 n n C12 H123 D12 sing 313 n n # _atom_sites.entry_id 8EIQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1501 1 MG MG . D 3 MG A 1 1502 2 MG MG . E 4 ATP A 1 1503 3 ATP ATP . F 4 ATP A 1 1504 4 ATP ATP . G 5 CLR A 1 1505 2601 CLR CLR . H 6 D12 A 1 1506 3201 D12 ACC . I 7 VX7 A 1 1507 1501 VX7 VX7 . J 8 WJX A 1 1508 1701 WJX VX4 . K 9 CV6 A 1 1509 1801 CV6 VX6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . H 6 171.141 160.878 144.907 1 59.63 ? C1 D12 1506 A 1 HETATM 2 C C2 D12 . . . H 6 169.928 160.34 144.151 1 64.11 ? C2 D12 1506 A 1 HETATM 3 C C3 D12 . . . H 6 168.742 161.303 144.173 1 61.29 ? C3 D12 1506 A 1 HETATM 4 C C4 D12 . . . H 6 168.221 161.564 145.584 1 64.88 ? C4 D12 1506 A 1 HETATM 5 C C5 D12 . . . H 6 166.787 162.089 145.579 1 61.35 ? C5 D12 1506 A 1 HETATM 6 C C6 D12 . . . H 6 166.354 162.614 146.946 1 62.18 ? C6 D12 1506 A 1 HETATM 7 C C7 D12 . . . H 6 165.719 161.541 147.825 1 62.66 ? C7 D12 1506 A 1 HETATM 8 C C8 D12 . . . H 6 164.588 162.1 148.684 1 62.66 ? C8 D12 1506 A 1 HETATM 9 C C9 D12 . . . H 6 165.021 163.314 149.501 1 60.12 ? C9 D12 1506 A 1 HETATM 10 C C10 D12 . . . H 6 163.863 164.262 149.803 1 59.68 ? C10 D12 1506 A 1 HETATM 11 C C11 D12 . . . H 6 162.741 163.592 150.589 1 59.4 ? C11 D12 1506 A 1 HETATM 12 C C12 D12 . . . H 6 161.666 164.587 151.016 1 59.8 ? C12 D12 1506 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #