data_8EIS
#
_model_server_result.job_id            k2Xf2LT5GAqnIi1_XY8pwg 
_model_server_result.datetime_utc      '2024-11-23 10:12:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8eis 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":402}' 
#
_entry.id    8EIS 
#
_exptl.entry_id    8EIS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EIS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EIS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 131 A CYS 131 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 96 B CYS 96 1_555 B SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 131 B CYS 131 1_555 B SG CYS 145 B CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 C SG CYS 96 C CYS 96 1_555 C SG CYS 150 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 C SG CYS 131 C CYS 131 1_555 C SG CYS 145 C CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 D SG CYS 96 D CYS 96 1_555 D SG CYS 150 D CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 D SG CYS 131 D CYS 131 1_555 D SG CYS 145 D CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 E SG CYS 96 E CYS 96 1_555 E SG CYS 150 E CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 E SG CYS 131 E CYS 131 1_555 E SG CYS 145 E CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 27 A ASN 27 1_555 G C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale2 A ND2 ASN 77 A ASN 77 1_555 F C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale3 A ND2 ASN 180 A ASN 180 1_555 H C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale4 A ND2 ASN 186 A ASN 186 1_555 I C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale5 B ND2 ASN 27 B ASN 27 1_555 L C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale6 B ND2 ASN 77 B ASN 77 1_555 K C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale7 B ND2 ASN 180 B ASN 180 1_555 M C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale8 B ND2 ASN 186 B ASN 186 1_555 N C1 NAG . B NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale9 C ND2 ASN 27 C ASN 27 1_555 Q C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale10 C ND2 ASN 77 C ASN 77 1_555 P C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale11 C ND2 ASN 180 C ASN 180 1_555 R C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale12 C ND2 ASN 186 C ASN 186 1_555 S C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale13 D ND2 ASN 27 D ASN 27 1_555 V C1 NAG . D NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale14 D ND2 ASN 77 D ASN 77 1_555 U C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale15 D ND2 ASN 180 D ASN 180 1_555 W C1 NAG . D NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale16 D ND2 ASN 186 D ASN 186 1_555 X C1 NAG . D NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale17 E ND2 ASN 27 E ASN 27 1_555 AA C1 NAG . E NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale18 E ND2 ASN 77 E ASN 77 1_555 Z C1 NAG . E NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale19 E ND2 ASN 180 E ASN 180 1_555 BA C1 NAG . E NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale20 E ND2 ASN 186 E ASN 186 1_555 CA C1 NAG . E NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 329 n n 
C1 O1 NAG sing 330 n n 
C1 O5 NAG sing 331 n n 
C1 H1 NAG sing 332 n n 
C2 C3 NAG sing 333 n n 
C2 N2 NAG sing 334 n n 
C2 H2 NAG sing 335 n n 
C3 C4 NAG sing 336 n n 
C3 O3 NAG sing 337 n n 
C3 H3 NAG sing 338 n n 
C4 C5 NAG sing 339 n n 
C4 O4 NAG sing 340 n n 
C4 H4 NAG sing 341 n n 
C5 C6 NAG sing 342 n n 
C5 O5 NAG sing 343 n n 
C5 H5 NAG sing 344 n n 
C6 O6 NAG sing 345 n n 
C6 H61 NAG sing 346 n n 
C6 H62 NAG sing 347 n n 
C7 C8 NAG sing 348 n n 
C7 N2 NAG sing 349 n n 
C7 O7 NAG doub 350 n n 
C8 H81 NAG sing 351 n n 
C8 H82 NAG sing 352 n n 
C8 H83 NAG sing 353 n n 
N2 HN2 NAG sing 354 n n 
O1 HO1 NAG sing 355 n n 
O3 HO3 NAG sing 356 n n 
O4 HO4 NAG sing 357 n n 
O6 HO6 NAG sing 358 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8EIS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NAG A 1 401 377 NAG NAG . 
G 2 NAG A 1 402 378 NAG NAG . 
H 2 NAG A 1 403 379 NAG NAG . 
I 2 NAG A 1 404 380 NAG NAG . 
J 3 DU0 A 1 405 381 DU0 DU0 . 
K 2 NAG B 1 401 377 NAG NAG . 
L 2 NAG B 1 402 378 NAG NAG . 
M 2 NAG B 1 403 379 NAG NAG . 
N 2 NAG B 1 404 380 NAG NAG . 
O 3 DU0 B 1 405 381 DU0 DU0 . 
P 2 NAG C 1 401 377 NAG NAG . 
Q 2 NAG C 1 402 378 NAG NAG . 
R 2 NAG C 1 403 379 NAG NAG . 
S 2 NAG C 1 404 380 NAG NAG . 
T 3 DU0 C 1 405 381 DU0 DU0 . 
U 2 NAG D 1 401 377 NAG NAG . 
V 2 NAG D 1 402 378 NAG NAG . 
W 2 NAG D 1 403 379 NAG NAG . 
X 2 NAG D 1 404 380 NAG NAG . 
Y 3 DU0 D 1 405 381 DU0 DU0 . 
Z 2 NAG E 1 401 377 NAG NAG . 
AA 2 NAG E 1 402 378 NAG NAG . 
BA 2 NAG E 1 403 379 NAG NAG . 
CA 2 NAG E 1 404 380 NAG NAG . 
DA 3 DU0 E 1 405 381 DU0 DU0 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . V 2 172.839 136.492 191.062 1 58.19 ? C1 NAG 402 D 1 
HETATM 2 C C2 NAG . . . V 2 173.263 135.031 190.939 1 57 ? C2 NAG 402 D 1 
HETATM 3 C C3 NAG . . . V 2 174.041 134.6 192.178 1 58.26 ? C3 NAG 402 D 1 
HETATM 4 C C4 NAG . . . V 2 175.204 135.547 192.43 1 59.46 ? C4 NAG 402 D 1 
HETATM 5 C C5 NAG . . . V 2 174.698 136.983 192.506 1 59.78 ? C5 NAG 402 D 1 
HETATM 6 C C6 NAG . . . V 2 175.811 137.995 192.633 1 59.57 ? C6 NAG 402 D 1 
HETATM 7 C C7 NAG . . . V 2 172.054 133.236 189.78 1 59.51 ? C7 NAG 402 D 1 
HETATM 8 C C8 NAG . . . V 2 170.791 132.433 189.719 1 57.44 ? C8 NAG 402 D 1 
HETATM 9 N N2 NAG . . . V 2 172.111 134.168 190.736 1 57.84 ? N2 NAG 402 D 1 
HETATM 10 O O3 NAG . . . V 2 174.526 133.275 191.994 1 58.63 ? O3 NAG 402 D 1 
HETATM 11 O O4 NAG . . . V 2 175.853 135.21 193.65 1 58.04 ? O4 NAG 402 D 1 
HETATM 12 O O5 NAG . . . V 2 173.986 137.307 191.304 1 61.63 ? O5 NAG 402 D 1 
HETATM 13 O O6 NAG . . . V 2 176.279 138.411 191.358 1 61.05 ? O6 NAG 402 D 1 
HETATM 14 O O7 NAG . . . V 2 172.978 133.053 188.996 1 58.21 ? O7 NAG 402 D 1 
HETATM 15 H H2 NAG . . . V 2 173.856 134.951 190.168 1 56.19 ? H2 NAG 402 D 1 
HETATM 16 H H3 NAG . . . V 2 173.444 134.617 192.949 1 56.29 ? H3 NAG 402 D 1 
HETATM 17 H H4 NAG . . . V 2 175.843 135.471 191.696 1 56.63 ? H4 NAG 402 D 1 
HETATM 18 H H5 NAG . . . V 2 174.095 137.071 193.268 1 56.42 ? H5 NAG 402 D 1 
HETATM 19 H H61 NAG . . . V 2 176.55 137.595 193.129 1 57.09 ? H61 NAG 402 D 1 
HETATM 20 H H62 NAG . . . V 2 175.482 138.773 193.122 1 56.33 ? H62 NAG 402 D 1 
HETATM 21 H H81 NAG . . . V 2 170.216 132.784 189.012 1 55.19 ? H81 NAG 402 D 1 
HETATM 22 H H82 NAG . . . V 2 170.326 132.493 190.575 1 55.55 ? H82 NAG 402 D 1 
HETATM 23 H H83 NAG . . . V 2 171.006 131.5 189.531 1 56.36 ? H83 NAG 402 D 1 
HETATM 24 H HN2 NAG . . . V 2 171.395 134.262 191.294 1 55.83 ? HN2 NAG 402 D 1 
HETATM 25 H HO3 NAG . . . V 2 175.077 133.068 192.659 1 56.84 ? HO3 NAG 402 D 1 
HETATM 26 H HO4 NAG . . . V 2 176.733 135.255 193.541 1 56.52 ? HO4 NAG 402 D 1 
HETATM 27 H HO6 NAG . . . V 2 177.166 138.453 191.367 1 57 ? HO6 NAG 402 D 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    86 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           27 
#