data_8EIY # _model_server_result.job_id h83dxdbfh_XDnMmDN8fmEQ _model_server_result.datetime_utc '2024-11-13 00:36:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eiy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8EIY # _exptl.entry_id 8EIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.95 _cell.angle_gamma 90 _cell.entry_id 8EIY _cell.length_a 55.1 _cell.length_b 71.54 _cell.length_c 92.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,F,G,H,I,K 1 1 A,C,D,E,J 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_454 -x-1,y+1/2,-z-1 -1 0 0 0 1 0 0 0 -1 -34.384134 35.77 -90.088881 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 70 A HIS 67 1_555 C CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 A SG CYS 100 A CYS 97 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A SG CYS 103 A CYS 100 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 A SG CYS 106 A CYS 103 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 A SG CYS 114 A CYS 111 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc6 B NE2 HIS 70 B HIS 67 1_555 F CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 B SG CYS 100 B CYS 97 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 B SG CYS 103 B CYS 100 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc9 B SG CYS 106 B CYS 103 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc10 B SG CYS 114 B CYS 111 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc11 F CO CO . B CO 401 1_555 I O9 CXF . B CXF 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8EIY _atom_sites.fract_transf_matrix[1][1] 0.018149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004174 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 401 375 CO CO . D 3 ZN A 1 402 376 ZN ZN . E 4 NAI A 1 403 401 NAI NAI . F 2 CO B 1 401 375 CO CO . G 3 ZN B 1 402 376 ZN ZN . H 4 NAI B 1 403 401 NAI NAI . I 5 CXF B 1 404 501 CXF CXF . J 6 HOH A 1 501 10 HOH HOH . J 6 HOH A 2 502 30 HOH HOH . J 6 HOH A 3 503 2 HOH HOH . J 6 HOH A 4 504 38 HOH HOH . J 6 HOH A 5 505 18 HOH HOH . J 6 HOH A 6 506 35 HOH HOH . J 6 HOH A 7 507 40 HOH HOH . J 6 HOH A 8 508 5 HOH HOH . J 6 HOH A 9 509 27 HOH HOH . J 6 HOH A 10 510 43 HOH HOH . J 6 HOH A 11 511 46 HOH HOH . J 6 HOH A 12 512 36 HOH HOH . J 6 HOH A 13 513 7 HOH HOH . J 6 HOH A 14 514 15 HOH HOH . J 6 HOH A 15 515 14 HOH HOH . J 6 HOH A 16 516 44 HOH HOH . J 6 HOH A 17 517 42 HOH HOH . J 6 HOH A 18 518 41 HOH HOH . J 6 HOH A 19 519 6 HOH HOH . J 6 HOH A 20 520 45 HOH HOH . J 6 HOH A 21 521 24 HOH HOH . J 6 HOH A 22 522 39 HOH HOH . J 6 HOH A 23 523 9 HOH HOH . J 6 HOH A 24 524 22 HOH HOH . J 6 HOH A 25 525 28 HOH HOH . J 6 HOH A 26 526 19 HOH HOH . J 6 HOH A 27 527 21 HOH HOH . K 6 HOH B 1 501 29 HOH HOH . K 6 HOH B 2 502 37 HOH HOH . K 6 HOH B 3 503 3 HOH HOH . K 6 HOH B 4 504 13 HOH HOH . K 6 HOH B 5 505 25 HOH HOH . K 6 HOH B 6 506 26 HOH HOH . K 6 HOH B 7 507 8 HOH HOH . K 6 HOH B 8 508 48 HOH HOH . K 6 HOH B 9 509 11 HOH HOH . K 6 HOH B 10 510 49 HOH HOH . K 6 HOH B 11 511 4 HOH HOH . K 6 HOH B 12 512 1 HOH HOH . K 6 HOH B 13 513 47 HOH HOH . K 6 HOH B 14 514 23 HOH HOH . K 6 HOH B 15 515 12 HOH HOH . K 6 HOH B 16 516 32 HOH HOH . K 6 HOH B 17 517 31 HOH HOH . K 6 HOH B 18 518 17 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -35.554 _atom_site.Cartn_y 47.939 _atom_site.Cartn_z -19.801 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 76.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #