data_8EIY # _model_server_result.job_id Mbc2-1lPNwJiNXLR5d01VQ _model_server_result.datetime_utc '2024-11-13 00:38:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eiy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 8EIY # _exptl.entry_id 8EIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.95 _cell.angle_gamma 90 _cell.entry_id 8EIY _cell.length_a 55.1 _cell.length_b 71.54 _cell.length_c 92.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,F,G,H,I,K 1 1 A,C,D,E,J 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_454 -x-1,y+1/2,-z-1 -1 0 0 0 1 0 0 0 -1 -34.384134 35.77 -90.088881 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 70 A HIS 67 1_555 C CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 A SG CYS 100 A CYS 97 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A SG CYS 103 A CYS 100 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 A SG CYS 106 A CYS 103 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 A SG CYS 114 A CYS 111 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc6 B NE2 HIS 70 B HIS 67 1_555 F CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 B SG CYS 100 B CYS 97 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 B SG CYS 103 B CYS 100 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc9 B SG CYS 106 B CYS 103 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc10 B SG CYS 114 B CYS 111 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc11 F CO CO . B CO 401 1_555 I O9 CXF . B CXF 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 259 n n PA O2A NAI sing 260 n n PA O5B NAI sing 261 n n PA O3 NAI sing 262 n n O2A HOA2 NAI sing 263 n n O5B C5B NAI sing 264 n n C5B C4B NAI sing 265 n n C5B H51A NAI sing 266 n n C5B H52A NAI sing 267 n n C4B O4B NAI sing 268 n n C4B C3B NAI sing 269 n n C4B H4B NAI sing 270 n n O4B C1B NAI sing 271 n n C3B O3B NAI sing 272 n n C3B C2B NAI sing 273 n n C3B H3B NAI sing 274 n n O3B HO3A NAI sing 275 n n C2B O2B NAI sing 276 n n C2B C1B NAI sing 277 n n C2B H2B NAI sing 278 n n O2B HO2A NAI sing 279 n n C1B N9A NAI sing 280 n n C1B H1B NAI sing 281 n n N9A C8A NAI sing 282 n y N9A C4A NAI sing 283 n y C8A N7A NAI doub 284 n y C8A H8A NAI sing 285 n n N7A C5A NAI sing 286 n y C5A C6A NAI sing 287 n y C5A C4A NAI doub 288 n y C6A N6A NAI sing 289 n n C6A N1A NAI doub 290 n y N6A H61A NAI sing 291 n n N6A H62A NAI sing 292 n n N1A C2A NAI sing 293 n y C2A N3A NAI doub 294 n y C2A H2A NAI sing 295 n n N3A C4A NAI sing 296 n y O3 PN NAI sing 297 n n PN O1N NAI sing 298 n n PN O2N NAI doub 299 n n PN O5D NAI sing 300 n n O1N HO1N NAI sing 301 n n O5D C5D NAI sing 302 n n C5D C4D NAI sing 303 n n C5D H51N NAI sing 304 n n C5D H52N NAI sing 305 n n C4D O4D NAI sing 306 n n C4D C3D NAI sing 307 n n C4D H4D NAI sing 308 n n O4D C1D NAI sing 309 n n C3D O3D NAI sing 310 n n C3D C2D NAI sing 311 n n C3D H3D NAI sing 312 n n O3D HO3N NAI sing 313 n n C2D O2D NAI sing 314 n n C2D C1D NAI sing 315 n n C2D H2D NAI sing 316 n n O2D HO2N NAI sing 317 n n C1D N1N NAI sing 318 n n C1D H1D NAI sing 319 n n N1N C2N NAI sing 320 n n N1N C6N NAI sing 321 n n C2N C3N NAI doub 322 n n C2N H2N NAI sing 323 n n C3N C7N NAI sing 324 n n C3N C4N NAI sing 325 n n C7N O7N NAI doub 326 n n C7N N7N NAI sing 327 n n N7N H71N NAI sing 328 n n N7N H72N NAI sing 329 n n C4N C5N NAI sing 330 n n C4N H4N NAI sing 331 n n C4N H42N NAI sing 332 n n C5N C6N NAI doub 333 n n C5N H5N NAI sing 334 n n C6N H6N NAI sing 335 n n # _atom_sites.entry_id 8EIY _atom_sites.fract_transf_matrix[1][1] 0.018149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004174 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 401 375 CO CO . D 3 ZN A 1 402 376 ZN ZN . E 4 NAI A 1 403 401 NAI NAI . F 2 CO B 1 401 375 CO CO . G 3 ZN B 1 402 376 ZN ZN . H 4 NAI B 1 403 401 NAI NAI . I 5 CXF B 1 404 501 CXF CXF . J 6 HOH A 1 501 10 HOH HOH . J 6 HOH A 2 502 30 HOH HOH . J 6 HOH A 3 503 2 HOH HOH . J 6 HOH A 4 504 38 HOH HOH . J 6 HOH A 5 505 18 HOH HOH . J 6 HOH A 6 506 35 HOH HOH . J 6 HOH A 7 507 40 HOH HOH . J 6 HOH A 8 508 5 HOH HOH . J 6 HOH A 9 509 27 HOH HOH . J 6 HOH A 10 510 43 HOH HOH . J 6 HOH A 11 511 46 HOH HOH . J 6 HOH A 12 512 36 HOH HOH . J 6 HOH A 13 513 7 HOH HOH . J 6 HOH A 14 514 15 HOH HOH . J 6 HOH A 15 515 14 HOH HOH . J 6 HOH A 16 516 44 HOH HOH . J 6 HOH A 17 517 42 HOH HOH . J 6 HOH A 18 518 41 HOH HOH . J 6 HOH A 19 519 6 HOH HOH . J 6 HOH A 20 520 45 HOH HOH . J 6 HOH A 21 521 24 HOH HOH . J 6 HOH A 22 522 39 HOH HOH . J 6 HOH A 23 523 9 HOH HOH . J 6 HOH A 24 524 22 HOH HOH . J 6 HOH A 25 525 28 HOH HOH . J 6 HOH A 26 526 19 HOH HOH . J 6 HOH A 27 527 21 HOH HOH . K 6 HOH B 1 501 29 HOH HOH . K 6 HOH B 2 502 37 HOH HOH . K 6 HOH B 3 503 3 HOH HOH . K 6 HOH B 4 504 13 HOH HOH . K 6 HOH B 5 505 25 HOH HOH . K 6 HOH B 6 506 26 HOH HOH . K 6 HOH B 7 507 8 HOH HOH . K 6 HOH B 8 508 48 HOH HOH . K 6 HOH B 9 509 11 HOH HOH . K 6 HOH B 10 510 49 HOH HOH . K 6 HOH B 11 511 4 HOH HOH . K 6 HOH B 12 512 1 HOH HOH . K 6 HOH B 13 513 47 HOH HOH . K 6 HOH B 14 514 23 HOH HOH . K 6 HOH B 15 515 12 HOH HOH . K 6 HOH B 16 516 32 HOH HOH . K 6 HOH B 17 517 31 HOH HOH . K 6 HOH B 18 518 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . E 4 -18.357 10.184 -29.67 1 58.48 ? PA NAI 403 A 1 HETATM 2 O O1A NAI . . . E 4 -18.583 8.73 -29.281 1 57.62 ? O1A NAI 403 A 1 HETATM 3 O O2A NAI . . . E 4 -19.013 11.103 -28.666 1 54 ? O2A NAI 403 A 1 HETATM 4 O O5B NAI . . . E 4 -18.963 10.531 -31.162 1 57.87 ? O5B NAI 403 A 1 HETATM 5 C C5B NAI . . . E 4 -18.746 9.641 -32.218 1 51.82 ? C5B NAI 403 A 1 HETATM 6 C C4B NAI . . . E 4 -20.063 9.559 -33.032 1 56.75 ? C4B NAI 403 A 1 HETATM 7 O O4B NAI . . . E 4 -19.888 8.809 -34.089 1 52.07 ? O4B NAI 403 A 1 HETATM 8 C C3B NAI . . . E 4 -21.136 8.87 -32.156 1 55.26 ? C3B NAI 403 A 1 HETATM 9 O O3B NAI . . . E 4 -22.283 9.596 -32.133 1 49.86 ? O3B NAI 403 A 1 HETATM 10 C C2B NAI . . . E 4 -21.363 7.502 -32.825 1 53.81 ? C2B NAI 403 A 1 HETATM 11 O O2B NAI . . . E 4 -22.795 7.113 -32.684 1 57.11 ? O2B NAI 403 A 1 HETATM 12 C C1B NAI . . . E 4 -21.08 7.722 -34.079 1 55.49 ? C1B NAI 403 A 1 HETATM 13 N N9A NAI . . . E 4 -20.662 6.52 -34.754 1 50.81 ? N9A NAI 403 A 1 HETATM 14 C C8A NAI . . . E 4 -20.061 5.458 -34.211 1 50.17 ? C8A NAI 403 A 1 HETATM 15 N N7A NAI . . . E 4 -19.855 4.558 -35.181 1 49.6 ? N7A NAI 403 A 1 HETATM 16 C C5A NAI . . . E 4 -20.329 5.074 -36.325 1 53.32 ? C5A NAI 403 A 1 HETATM 17 C C6A NAI . . . E 4 -20.38 4.586 -37.612 1 48.93 ? C6A NAI 403 A 1 HETATM 18 N N6A NAI . . . E 4 -19.917 3.322 -38.162 1 49.78 ? N6A NAI 403 A 1 HETATM 19 N N1A NAI . . . E 4 -20.925 5.32 -38.57 1 51.91 ? N1A NAI 403 A 1 HETATM 20 C C2A NAI . . . E 4 -21.432 6.548 -38.297 1 52.13 ? C2A NAI 403 A 1 HETATM 21 N N3A NAI . . . E 4 -21.384 7.03 -37.034 1 53.66 ? N3A NAI 403 A 1 HETATM 22 C C4A NAI . . . E 4 -20.831 6.284 -36.058 1 53.51 ? C4A NAI 403 A 1 HETATM 23 O O3 NAI . . . E 4 -16.756 10.547 -29.729 1 58.02 ? O3 NAI 403 A 1 HETATM 24 P PN NAI . . . E 4 -16.204 12.1 -29.798 1 52.08 ? PN NAI 403 A 1 HETATM 25 O O1N NAI . . . E 4 -15.865 12.596 -28.415 1 58.54 ? O1N NAI 403 A 1 HETATM 26 O O2N NAI . . . E 4 -17.247 13.031 -30.365 1 50.03 ? O2N NAI 403 A 1 HETATM 27 O O5D NAI . . . E 4 -14.852 12.089 -30.74 1 53.32 ? O5D NAI 403 A 1 HETATM 28 C C5D NAI . . . E 4 -14.935 11.536 -32.026 1 57.05 ? C5D NAI 403 A 1 HETATM 29 C C4D NAI . . . E 4 -13.548 11.013 -32.504 1 51.05 ? C4D NAI 403 A 1 HETATM 30 O O4D NAI . . . E 4 -12.708 12.011 -32.614 1 51.87 ? O4D NAI 403 A 1 HETATM 31 C C3D NAI . . . E 4 -12.925 10.036 -31.48 1 52.29 ? C3D NAI 403 A 1 HETATM 32 O O3D NAI . . . E 4 -12.41 8.951 -32.113 1 51.2 ? O3D NAI 403 A 1 HETATM 33 C C2D NAI . . . E 4 -11.799 10.858 -30.823 1 52.57 ? C2D NAI 403 A 1 HETATM 34 O O2D NAI . . . E 4 -10.726 9.972 -30.27 1 50.08 ? O2D NAI 403 A 1 HETATM 35 C C1D NAI . . . E 4 -11.368 11.598 -31.808 1 49.11 ? C1D NAI 403 A 1 HETATM 36 N N1N NAI . . . E 4 -10.715 12.784 -31.312 1 47.45 ? N1N NAI 403 A 1 HETATM 37 C C2N NAI . . . E 4 -9.522 13.292 -31.956 1 50.73 ? C2N NAI 403 A 1 HETATM 38 C C3N NAI . . . E 4 -8.914 14.636 -31.566 1 57.51 ? C3N NAI 403 A 1 HETATM 39 C C7N NAI . . . E 4 -7.821 15.237 -32.449 1 53.42 ? C7N NAI 403 A 1 HETATM 40 O O7N NAI . . . E 4 -7.309 16.268 -32.164 1 50.92 ? O7N NAI 403 A 1 HETATM 41 N N7N NAI . . . E 4 -7.421 14.535 -33.651 1 57.88 ? N7N NAI 403 A 1 HETATM 42 C C4N NAI . . . E 4 -9.562 15.504 -30.487 1 59.43 ? C4N NAI 403 A 1 HETATM 43 C C5N NAI . . . E 4 -10.633 14.783 -29.669 1 57.41 ? C5N NAI 403 A 1 HETATM 44 C C6N NAI . . . E 4 -11.252 13.473 -30.157 1 57.69 ? C6N NAI 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #