data_8EJK
#
_model_server_result.job_id            3twA6HWsrdAFmGhOxcPW9g 
_model_server_result.datetime_utc      '2024-12-18 01:42:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ejk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8EJK 
#
_exptl.entry_id    8EJK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              524.625 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "[(3S)-6-({2',6'-dimethyl-4'-[3-(methylsulfonyl)propoxy]biphenyl-3-yl}methoxy)-2,3-dihydro-1-benzofuran-3-yl]acetic acid" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EJK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EJK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 74 E CYS 22 1_555 D SG CYS 148 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 D SG CYS 211 E CYS 159 1_555 D SG CYS 281 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C29 H32 O7 S' 
_chem_comp.formula_weight    524.625 
_chem_comp.id                2YB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "[(3S)-6-({2',6'-dimethyl-4'-[3-(methylsulfonyl)propoxy]biphenyl-3-yl}methoxy)-2,3-dihydro-1-benzofuran-3-yl]acetic acid" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C20 2YB doub 1 n y 
C19 C18 2YB sing 2 n y 
C20 C21 2YB sing 3 n y 
C18 C17 2YB doub 4 n y 
C21 C22 2YB sing 5 n n 
C21 C38 2YB doub 6 n y 
C17 C38 2YB sing 7 n y 
C17 C16 2YB sing 8 n n 
C1 C2 2YB sing 9 n n 
C22 O23 2YB sing 10 n n 
C16 C2 2YB doub 11 n y 
C16 C14 2YB sing 12 n y 
C2 C3 2YB sing 13 n y 
O23 C24 2YB sing 14 n n 
C15 C14 2YB sing 15 n n 
C14 C13 2YB doub 16 n y 
C3 C4 2YB doub 17 n y 
C24 C25 2YB doub 18 n y 
C24 C37 2YB sing 19 n y 
C25 C26 2YB sing 20 n y 
O33 C31 2YB doub 21 n n 
C37 C36 2YB doub 22 n y 
C13 C4 2YB sing 23 n y 
C4 O5 2YB sing 24 n n 
C30 C31 2YB sing 25 n n 
C30 C28 2YB sing 26 n n 
C26 C27 2YB doub 27 n y 
C36 C27 2YB sing 28 n y 
C36 O35 2YB sing 29 n n 
C31 O32 2YB sing 30 n n 
C27 C28 2YB sing 31 n n 
O5 C6 2YB sing 32 n n 
O35 C34 2YB sing 33 n n 
C6 C7 2YB sing 34 n n 
C28 C34 2YB sing 35 n n 
C7 C8 2YB sing 36 n n 
C10 S9 2YB sing 37 n n 
C8 S9 2YB sing 38 n n 
O11 S9 2YB doub 39 n n 
S9 O12 2YB doub 40 n n 
C6 H1 2YB sing 41 n n 
C6 H2 2YB sing 42 n n 
C7 H3 2YB sing 43 n n 
C7 H4 2YB sing 44 n n 
C8 H5 2YB sing 45 n n 
C8 H6 2YB sing 46 n n 
C10 H7 2YB sing 47 n n 
C10 H8 2YB sing 48 n n 
C10 H9 2YB sing 49 n n 
C13 H10 2YB sing 50 n n 
C15 H11 2YB sing 51 n n 
C15 H12 2YB sing 52 n n 
C15 H13 2YB sing 53 n n 
C20 H14 2YB sing 54 n n 
C22 H15 2YB sing 55 n n 
C22 H16 2YB sing 56 n n 
C26 H17 2YB sing 57 n n 
C28 H18 2YB sing 58 n n 
C1 H19 2YB sing 59 n n 
C1 H20 2YB sing 60 n n 
C1 H21 2YB sing 61 n n 
C3 H22 2YB sing 62 n n 
C18 H23 2YB sing 63 n n 
C19 H24 2YB sing 64 n n 
C25 H25 2YB sing 65 n n 
C30 H26 2YB sing 66 n n 
C30 H27 2YB sing 67 n n 
O32 H28 2YB sing 68 n n 
C34 H29 2YB sing 69 n n 
C34 H30 2YB sing 70 n n 
C37 H31 2YB sing 71 n n 
C38 H32 2YB sing 72 n n 
#
_atom_sites.entry_id                     8EJK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           2YB 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       2YB 
_pdbx_nonpoly_scheme.auth_mon_id      2YB 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 2YB . . . F 6 95.974 133.861 106.978 1 118.87 ? C4 2YB 401 R 1 
HETATM 2 C C6 2YB . . . F 6 93.766 133.825 107.689 1 118.87 ? C6 2YB 401 R 1 
HETATM 3 C C7 2YB . . . F 6 92.55 134.637 107.242 1 118.87 ? C7 2YB 401 R 1 
HETATM 4 C C8 2YB . . . F 6 92.445 135.906 108.089 1 118.87 ? C8 2YB 401 R 1 
HETATM 5 C C10 2YB . . . F 6 89.895 136.547 106.761 1 118.87 ? C10 2YB 401 R 1 
HETATM 6 C C13 2YB . . . F 6 97.21 134.453 106.759 1 118.87 ? C13 2YB 401 R 1 
HETATM 7 C C15 2YB . . . F 6 99.486 134.345 106.026 1 118.87 ? C15 2YB 401 R 1 
HETATM 8 C C17 2YB . . . F 6 99.127 131.615 105.378 1 118.87 ? C17 2YB 401 R 1 
HETATM 9 C C20 2YB . . . F 6 101.204 130.11 104.312 1 118.87 ? C20 2YB 401 R 1 
HETATM 10 C C21 2YB . . . F 6 100.301 130.732 103.461 1 118.87 ? C21 2YB 401 R 1 
HETATM 11 C C22 2YB . . . F 6 100.433 130.6 102.079 1 118.87 ? C22 2YB 401 R 1 
HETATM 12 C C24 2YB . . . F 6 101.975 130.667 100.367 1 118.87 ? C24 2YB 401 R 1 
HETATM 13 C C26 2YB . . . F 6 101.499 129.96 98.15 1 118.87 ? C26 2YB 401 R 1 
HETATM 14 C C28 2YB . . . F 6 102.716 131.229 96.393 1 118.87 ? C28 2YB 401 R 1 
HETATM 15 C C1 2YB . . . F 6 96.613 130.434 105.831 1 118.87 ? C1 2YB 401 R 1 
HETATM 16 C C2 2YB . . . F 6 96.837 131.774 106.132 1 118.87 ? C2 2YB 401 R 1 
HETATM 17 C C3 2YB . . . F 6 95.793 132.52 106.662 1 118.87 ? C3 2YB 401 R 1 
HETATM 18 O O5 2YB . . . F 6 94.954 134.602 107.498 1 118.87 ? O5 2YB 401 R 1 
HETATM 19 S S9 2YB . . . F 6 91.511 137.175 107.161 1 118.87 ? S9 2YB 401 R 1 
HETATM 20 O O11 2YB . . . F 6 91.373 138.436 108.017 1 118.87 ? O11 2YB 401 R 1 
HETATM 21 O O12 2YB . . . F 6 92.26 137.513 105.871 1 118.87 ? O12 2YB 401 R 1 
HETATM 22 C C14 2YB . . . F 6 98.262 133.715 106.229 1 118.87 ? C14 2YB 401 R 1 
HETATM 23 C C16 2YB . . . F 6 98.081 132.368 105.911 1 118.87 ? C16 2YB 401 R 1 
HETATM 24 C C18 2YB . . . F 6 100.038 130.988 106.223 1 118.87 ? C18 2YB 401 R 1 
HETATM 25 C C19 2YB . . . F 6 101.078 130.237 105.69 1 118.87 ? C19 2YB 401 R 1 
HETATM 26 O O23 2YB . . . F 6 101.82 130.59 101.719 1 118.87 ? O23 2YB 401 R 1 
HETATM 27 C C25 2YB . . . F 6 101.284 129.821 99.515 1 118.87 ? C25 2YB 401 R 1 
HETATM 28 C C27 2YB . . . F 6 102.345 130.88 97.688 1 118.87 ? C27 2YB 401 R 1 
HETATM 29 C C30 2YB . . . F 6 102.793 129.992 95.487 1 118.87 ? C30 2YB 401 R 1 
HETATM 30 C C31 2YB . . . F 6 104.241 129.526 95.293 1 118.87 ? C31 2YB 401 R 1 
HETATM 31 O O32 2YB . . . F 6 104.769 128.878 96.223 1 118.87 ? O32 2YB 401 R 1 
HETATM 32 O O33 2YB . . . F 6 104.782 129.81 94.205 1 118.87 ? O33 2YB 401 R 1 
HETATM 33 C C34 2YB . . . F 6 104.068 131.852 96.613 1 118.87 ? C34 2YB 401 R 1 
HETATM 34 O O35 2YB . . . F 6 103.823 132.57 97.824 1 118.87 ? O35 2YB 401 R 1 
HETATM 35 C C36 2YB . . . F 6 103.013 131.706 98.503 1 118.87 ? C36 2YB 401 R 1 
HETATM 36 C C37 2YB . . . F 6 102.837 131.605 99.818 1 118.87 ? C37 2YB 401 R 1 
HETATM 37 C C38 2YB . . . F 6 99.262 131.483 103.997 1 118.87 ? C38 2YB 401 R 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           37 
#