data_8EJX # _model_server_result.job_id ERxNBDOIPZIGUSzS1JZ1aQ _model_server_result.datetime_utc '2024-11-17 22:47:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ejx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8EJX # _exptl.entry_id 8EJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.193 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-phenyl-2-selanylbenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EJX _cell.length_a 57.014 _cell.length_b 57.014 _cell.length_c 87.602 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 61 A MET 61 1_555 A N CSO 62 A CSO 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C CSO 62 A CSO 62 1_555 A N GLN 63 A GLN 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A SG CYS 115 A CYS 115 1_555 B SE1 9JT . A 9JT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'C13 H11 N O Se' _chem_comp.formula_weight 276.193 _chem_comp.id 9JT _chem_comp.mon_nstd_flag . _chem_comp.name N-phenyl-2-selanylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '~{N}-phenyl-2-selanyl-benzamide;Ebselen, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C04 9JT doub 1 n y C05 C06 9JT sing 2 n y C04 C03 9JT sing 3 n y C06 C07 9JT doub 4 n y C03 C02 9JT doub 5 n y C07 C02 9JT sing 6 n y C07 C08 9JT sing 7 n n C16 C15 9JT doub 8 n y C16 C11 9JT sing 9 n y C02 SE1 9JT sing 10 n n N10 C08 9JT sing 11 n n N10 C11 9JT sing 12 n n C15 C14 9JT sing 13 n y C08 O09 9JT doub 14 n n C11 C12 9JT doub 15 n y C14 C13 9JT doub 16 n y C12 C13 9JT sing 17 n y C12 H1 9JT sing 18 n n C13 H2 9JT sing 19 n n C14 H3 9JT sing 20 n n C15 H4 9JT sing 21 n n C06 H5 9JT sing 22 n n C05 H6 9JT sing 23 n n C04 H7 9JT sing 24 n n C03 H8 9JT sing 25 n n SE1 H9 9JT sing 26 n n N10 H10 9JT sing 27 n n C16 H11 9JT sing 28 n n # _atom_sites.entry_id 8EJX _atom_sites.fract_transf_matrix[1][1] 0.01754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9JT A 1 201 1 9JT 9JT . C 3 HOH A 1 301 96 HOH HOH . C 3 HOH A 2 302 64 HOH HOH . C 3 HOH A 3 303 108 HOH HOH . C 3 HOH A 4 304 104 HOH HOH . C 3 HOH A 5 305 84 HOH HOH . C 3 HOH A 6 306 73 HOH HOH . C 3 HOH A 7 307 62 HOH HOH . C 3 HOH A 8 308 7 HOH HOH . C 3 HOH A 9 309 3 HOH HOH . C 3 HOH A 10 310 14 HOH HOH . C 3 HOH A 11 311 31 HOH HOH . C 3 HOH A 12 312 27 HOH HOH . C 3 HOH A 13 313 58 HOH HOH . C 3 HOH A 14 314 66 HOH HOH . C 3 HOH A 15 315 50 HOH HOH . C 3 HOH A 16 316 19 HOH HOH . C 3 HOH A 17 317 39 HOH HOH . C 3 HOH A 18 318 109 HOH HOH . C 3 HOH A 19 319 38 HOH HOH . C 3 HOH A 20 320 42 HOH HOH . C 3 HOH A 21 321 37 HOH HOH . C 3 HOH A 22 322 8 HOH HOH . C 3 HOH A 23 323 2 HOH HOH . C 3 HOH A 24 324 51 HOH HOH . C 3 HOH A 25 325 92 HOH HOH . C 3 HOH A 26 326 28 HOH HOH . C 3 HOH A 27 327 34 HOH HOH . C 3 HOH A 28 328 17 HOH HOH . C 3 HOH A 29 329 46 HOH HOH . C 3 HOH A 30 330 103 HOH HOH . C 3 HOH A 31 331 100 HOH HOH . C 3 HOH A 32 332 78 HOH HOH . C 3 HOH A 33 333 56 HOH HOH . C 3 HOH A 34 334 26 HOH HOH . C 3 HOH A 35 335 45 HOH HOH . C 3 HOH A 36 336 4 HOH HOH . C 3 HOH A 37 337 13 HOH HOH . C 3 HOH A 38 338 21 HOH HOH . C 3 HOH A 39 339 32 HOH HOH . C 3 HOH A 40 340 10 HOH HOH . C 3 HOH A 41 341 80 HOH HOH . C 3 HOH A 42 342 25 HOH HOH . C 3 HOH A 43 343 61 HOH HOH . C 3 HOH A 44 344 88 HOH HOH . C 3 HOH A 45 345 33 HOH HOH . C 3 HOH A 46 346 102 HOH HOH . C 3 HOH A 47 347 11 HOH HOH . C 3 HOH A 48 348 6 HOH HOH . C 3 HOH A 49 349 47 HOH HOH . C 3 HOH A 50 350 77 HOH HOH . C 3 HOH A 51 351 60 HOH HOH . C 3 HOH A 52 352 53 HOH HOH . C 3 HOH A 53 353 9 HOH HOH . C 3 HOH A 54 354 57 HOH HOH . C 3 HOH A 55 355 76 HOH HOH . C 3 HOH A 56 356 90 HOH HOH . C 3 HOH A 57 357 41 HOH HOH . C 3 HOH A 58 358 23 HOH HOH . C 3 HOH A 59 359 99 HOH HOH . C 3 HOH A 60 360 5 HOH HOH . C 3 HOH A 61 361 70 HOH HOH . C 3 HOH A 62 362 48 HOH HOH . C 3 HOH A 63 363 22 HOH HOH . C 3 HOH A 64 364 97 HOH HOH . C 3 HOH A 65 365 15 HOH HOH . C 3 HOH A 66 366 12 HOH HOH . C 3 HOH A 67 367 74 HOH HOH . C 3 HOH A 68 368 75 HOH HOH . C 3 HOH A 69 369 43 HOH HOH . C 3 HOH A 70 370 85 HOH HOH . C 3 HOH A 71 371 87 HOH HOH . C 3 HOH A 72 372 1 HOH HOH . C 3 HOH A 73 373 35 HOH HOH . C 3 HOH A 74 374 105 HOH HOH . C 3 HOH A 75 375 36 HOH HOH . C 3 HOH A 76 376 29 HOH HOH . C 3 HOH A 77 377 67 HOH HOH . C 3 HOH A 78 378 30 HOH HOH . C 3 HOH A 79 379 107 HOH HOH . C 3 HOH A 80 380 16 HOH HOH . C 3 HOH A 81 381 89 HOH HOH . C 3 HOH A 82 382 68 HOH HOH . C 3 HOH A 83 383 55 HOH HOH . C 3 HOH A 84 384 24 HOH HOH . C 3 HOH A 85 385 71 HOH HOH . C 3 HOH A 86 386 82 HOH HOH . C 3 HOH A 87 387 91 HOH HOH . C 3 HOH A 88 388 86 HOH HOH . C 3 HOH A 89 389 72 HOH HOH . C 3 HOH A 90 390 52 HOH HOH . C 3 HOH A 91 391 114 HOH HOH . C 3 HOH A 92 392 69 HOH HOH . C 3 HOH A 93 393 113 HOH HOH . C 3 HOH A 94 394 98 HOH HOH . C 3 HOH A 95 395 93 HOH HOH . C 3 HOH A 96 396 65 HOH HOH . C 3 HOH A 97 397 49 HOH HOH . C 3 HOH A 98 398 79 HOH HOH . C 3 HOH A 99 399 94 HOH HOH . C 3 HOH A 100 400 111 HOH HOH . C 3 HOH A 101 401 112 HOH HOH . C 3 HOH A 102 402 40 HOH HOH . C 3 HOH A 103 403 63 HOH HOH . C 3 HOH A 104 404 101 HOH HOH . C 3 HOH A 105 405 83 HOH HOH . C 3 HOH A 106 406 110 HOH HOH . C 3 HOH A 107 407 44 HOH HOH . C 3 HOH A 108 408 54 HOH HOH . C 3 HOH A 109 409 115 HOH HOH . C 3 HOH A 110 410 18 HOH HOH . C 3 HOH A 111 411 20 HOH HOH . C 3 HOH A 112 412 106 HOH HOH . C 3 HOH A 113 413 81 HOH HOH . C 3 HOH A 114 414 59 HOH HOH . C 3 HOH A 115 415 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 9JT . . . B 2 80.348 47.656 80.317 1 42.23 ? C11 9JT 201 A 1 HETATM 2 C C12 9JT . . . B 2 79.855 48.675 79.517 1 45.87 ? C12 9JT 201 A 1 HETATM 3 C C13 9JT . . . B 2 79.994 48.6 78.142 1 47.89 ? C13 9JT 201 A 1 HETATM 4 C C14 9JT . . . B 2 80.626 47.507 77.571 1 48.9 ? C14 9JT 201 A 1 HETATM 5 C C15 9JT . . . B 2 81.116 46.49 78.369 1 42.99 ? C15 9JT 201 A 1 HETATM 6 O O09 9JT . . . B 2 80.593 45.518 82.206 1 39.67 ? O09 9JT 201 A 1 HETATM 7 C C08 9JT . . . B 2 80.316 46.599 82.609 1 46.6 ? C08 9JT 201 A 1 HETATM 8 C C07 9JT . . . B 2 80.111 46.818 84.094 1 39.84 ? C07 9JT 201 A 1 HETATM 9 C C06 9JT . . . B 2 79.881 48.096 84.581 1 40.27 ? C06 9JT 201 A 1 HETATM 10 C C05 9JT . . . B 2 79.704 48.285 85.947 1 39.35 ? C05 9JT 201 A 1 HETATM 11 C C04 9JT . . . B 2 79.75 47.197 86.822 1 38.48 ? C04 9JT 201 A 1 HETATM 12 C C03 9JT . . . B 2 79.976 45.922 86.31 1 44.23 ? C03 9JT 201 A 1 HETATM 13 C C02 9JT . . . B 2 80.161 45.731 84.94 1 45.36 ? C02 9JT 201 A 1 HETATM 14 SE SE1 9JT . . . B 2 80.482 43.933 84.215 1 42.84 ? SE1 9JT 201 A 1 HETATM 15 N N10 9JT . . . B 2 80.18 47.754 81.753 1 43.35 ? N10 9JT 201 A 1 HETATM 16 C C16 9JT . . . B 2 80.977 46.568 79.741 1 43.99 ? C16 9JT 201 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 428 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #