data_8EKP
#
_model_server_result.job_id            2dntX2qtOec0nCSTM-llyQ 
_model_server_result.datetime_utc      '2025-03-05 01:25:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ekp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":801}' 
#
_entry.id    8EKP 
#
_exptl.entry_id    8EKP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              522.632 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EKP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EKP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C25 H49 N O8 P -1' 
_chem_comp.formula_weight    522.632 
_chem_comp.id                PEX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PEX sing 235 n n 
O2 P1 PEX doub 236 n n 
P1 O3 PEX sing 237 n n 
P1 O8 PEX sing 238 n n 
O3 C1 PEX sing 239 n n 
C1 C2 PEX sing 240 n n 
C1 H1 PEX sing 241 n n 
C1 H2 PEX sing 242 n n 
C2 C3 PEX sing 243 n n 
C2 O6 PEX sing 244 n n 
C2 H3 PEX sing 245 n n 
C3 O4 PEX sing 246 n n 
C3 H4 PEX sing 247 n n 
C3 H5 PEX sing 248 n n 
O4 C4 PEX sing 249 n n 
C4 O5 PEX doub 250 n n 
C4 C5 PEX sing 251 n n 
C5 C6 PEX sing 252 n n 
C5 H6 PEX sing 253 n n 
C5 H7 PEX sing 254 n n 
C6 C7 PEX sing 255 n n 
C6 H8 PEX sing 256 n n 
C6 H9 PEX sing 257 n n 
C7 C8 PEX sing 258 n n 
C7 H10 PEX sing 259 n n 
C7 H11 PEX sing 260 n n 
C8 C9 PEX sing 261 n n 
C8 H12 PEX sing 262 n n 
C8 H13 PEX sing 263 n n 
C9 C10 PEX sing 264 n n 
C9 H14 PEX sing 265 n n 
C9 H15 PEX sing 266 n n 
C10 C11 PEX sing 267 n n 
C10 H16 PEX sing 268 n n 
C10 H17 PEX sing 269 n n 
C11 C12 PEX sing 270 n n 
C11 H18 PEX sing 271 n n 
C11 H19 PEX sing 272 n n 
C12 C13 PEX sing 273 n n 
C12 H20 PEX sing 274 n n 
C12 H21 PEX sing 275 n n 
C13 H22 PEX sing 276 n n 
C13 H23 PEX sing 277 n n 
C13 H24 PEX sing 278 n n 
O6 C14 PEX sing 279 n n 
C14 O7 PEX doub 280 n n 
C14 C15 PEX sing 281 n n 
C15 C16 PEX sing 282 n n 
C15 H25 PEX sing 283 n n 
C15 H26 PEX sing 284 n n 
C16 C17 PEX sing 285 n n 
C16 H27 PEX sing 286 n n 
C16 H28 PEX sing 287 n n 
C17 C18 PEX sing 288 n n 
C17 H29 PEX sing 289 n n 
C17 H30 PEX sing 290 n n 
C18 C19 PEX sing 291 n n 
C18 H31 PEX sing 292 n n 
C18 H32 PEX sing 293 n n 
C19 C20 PEX sing 294 n n 
C19 H33 PEX sing 295 n n 
C19 H34 PEX sing 296 n n 
C20 C21 PEX sing 297 n n 
C20 H35 PEX sing 298 n n 
C20 H36 PEX sing 299 n n 
C21 C22 PEX sing 300 n n 
C21 H37 PEX sing 301 n n 
C21 H38 PEX sing 302 n n 
C22 C23 PEX sing 303 n n 
C22 H39 PEX sing 304 n n 
C22 H40 PEX sing 305 n n 
C23 H41 PEX sing 306 n n 
C23 H42 PEX sing 307 n n 
C23 H43 PEX sing 308 n n 
O8 C24 PEX sing 309 n n 
C24 C25 PEX sing 310 n n 
C24 H44 PEX sing 311 n n 
C24 H45 PEX sing 312 n n 
C25 N1 PEX sing 313 n n 
C25 H46 PEX sing 314 n n 
C25 H47 PEX sing 315 n n 
N1 H48 PEX sing 316 n n 
N1 H49 PEX sing 317 n n 
#
_atom_sites.entry_id                     8EKP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PEX A 1 801 801 PEX PEX . 
F 2 PEX A 1 802 802 PEX PEX . 
G 2 PEX B 1 801 801 PEX PEX . 
H 2 PEX B 1 802 802 PEX PEX . 
I 2 PEX C 1 801 801 PEX PEX . 
J 2 PEX C 1 802 802 PEX PEX . 
K 2 PEX D 1 801 801 PEX PEX . 
L 2 PEX D 1 802 802 PEX PEX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PEX . . . I 2 162.347 172.774 155.544 1 68.96 ? O1 PEX 801 C 1 
HETATM 2 O O2 PEX . . . I 2 163.124 174.662 156.916 1 73.43 ? O2 PEX 801 C 1 
HETATM 3 P P1 PEX . . . I 2 161.948 173.765 156.608 1 88.14 ? P1 PEX 801 C 1 
HETATM 4 O O3 PEX . . . I 2 161.485 172.969 157.976 1 67.82 ? O3 PEX 801 C 1 
HETATM 5 C C1 PEX . . . I 2 162.453 172.317 158.746 1 64.23 ? C1 PEX 801 C 1 
HETATM 6 C C2 PEX . . . I 2 161.773 171.649 159.938 1 67.99 ? C2 PEX 801 C 1 
HETATM 7 C C3 PEX . . . I 2 160.796 172.642 160.568 1 68.8 ? C3 PEX 801 C 1 
HETATM 8 O O4 PEX . . . I 2 160.868 172.551 161.962 1 68.75 ? O4 PEX 801 C 1 
HETATM 9 C C4 PEX . . . I 2 159.656 172.796 162.617 1 68.34 ? C4 PEX 801 C 1 
HETATM 10 O O5 PEX . . . I 2 158.962 171.892 162.935 1 68.65 ? O5 PEX 801 C 1 
HETATM 11 C C5 PEX . . . I 2 159.236 174.232 162.925 1 67.64 ? C5 PEX 801 C 1 
HETATM 12 C C6 PEX . . . I 2 158.923 174.364 164.415 1 63.03 ? C6 PEX 801 C 1 
HETATM 13 C C7 PEX . . . I 2 157.408 174.323 164.609 1 64.85 ? C7 PEX 801 C 1 
HETATM 14 C C8 PEX . . . I 2 157.045 174.913 165.969 1 62.73 ? C8 PEX 801 C 1 
HETATM 15 C C9 PEX . . . I 2 155.592 175.385 165.938 1 67.29 ? C9 PEX 801 C 1 
HETATM 16 C C10 PEX . . . I 2 155.302 176.233 167.175 1 66.87 ? C10 PEX 801 C 1 
HETATM 17 C C11 PEX . . . I 2 154.118 177.151 166.885 1 69.74 ? C11 PEX 801 C 1 
HETATM 18 C C12 PEX . . . I 2 153.927 178.128 168.044 1 67.81 ? C12 PEX 801 C 1 
HETATM 19 C C13 PEX . . . I 2 153.017 179.269 167.595 1 63.56 ? C13 PEX 801 C 1 
HETATM 20 O O6 PEX . . . I 2 161.087 170.518 159.483 1 70.34 ? O6 PEX 801 C 1 
HETATM 21 C C14 PEX . . . I 2 160.346 169.826 160.449 1 70.58 ? C14 PEX 801 C 1 
HETATM 22 O O7 PEX . . . I 2 160.843 169.508 161.478 1 69.15 ? O7 PEX 801 C 1 
HETATM 23 C C15 PEX . . . I 2 158.889 169.474 160.159 1 67.7 ? C15 PEX 801 C 1 
HETATM 24 C C16 PEX . . . I 2 158.473 168.251 160.972 1 67.11 ? C16 PEX 801 C 1 
HETATM 25 C C17 PEX . . . I 2 157.597 168.698 162.143 1 64.77 ? C17 PEX 801 C 1 
HETATM 26 C C18 PEX . . . I 2 156.385 169.467 161.622 1 68.66 ? C18 PEX 801 C 1 
HETATM 27 C C19 PEX . . . I 2 155.632 170.068 162.804 1 68.33 ? C19 PEX 801 C 1 
HETATM 28 C C20 PEX . . . I 2 154.426 170.861 162.307 1 68.64 ? C20 PEX 801 C 1 
HETATM 29 C C21 PEX . . . I 2 154.363 172.19 163.056 1 68.39 ? C21 PEX 801 C 1 
HETATM 30 C C22 PEX . . . I 2 152.908 172.631 163.2 1 69.58 ? C22 PEX 801 C 1 
HETATM 31 C C23 PEX . . . I 2 152.173 171.665 164.125 1 65.57 ? C23 PEX 801 C 1 
HETATM 32 O O8 PEX . . . I 2 160.691 174.668 156.046 1 66.75 ? O8 PEX 801 C 1 
HETATM 33 C C24 PEX . . . I 2 160.846 176.055 155.989 1 65.14 ? C24 PEX 801 C 1 
HETATM 34 C C25 PEX . . . I 2 160.081 176.6 154.787 1 66.08 ? C25 PEX 801 C 1 
HETATM 35 N N1 PEX . . . I 2 158.97 175.716 154.489 1 70.08 ? N1 PEX 801 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#