data_8EKS # _model_server_result.job_id n8GiDm48bh-TLNGkGpfctQ _model_server_result.datetime_utc '2024-10-10 17:20:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 8EKS # _exptl.entry_id 8EKS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 522.632 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EKS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C25 H49 N O8 P -1' _chem_comp.formula_weight 522.632 _chem_comp.id PEX _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PEX sing 235 n n O2 P1 PEX doub 236 n n P1 O3 PEX sing 237 n n P1 O8 PEX sing 238 n n O3 C1 PEX sing 239 n n C1 C2 PEX sing 240 n n C1 H1 PEX sing 241 n n C1 H2 PEX sing 242 n n C2 C3 PEX sing 243 n n C2 O6 PEX sing 244 n n C2 H3 PEX sing 245 n n C3 O4 PEX sing 246 n n C3 H4 PEX sing 247 n n C3 H5 PEX sing 248 n n O4 C4 PEX sing 249 n n C4 O5 PEX doub 250 n n C4 C5 PEX sing 251 n n C5 C6 PEX sing 252 n n C5 H6 PEX sing 253 n n C5 H7 PEX sing 254 n n C6 C7 PEX sing 255 n n C6 H8 PEX sing 256 n n C6 H9 PEX sing 257 n n C7 C8 PEX sing 258 n n C7 H10 PEX sing 259 n n C7 H11 PEX sing 260 n n C8 C9 PEX sing 261 n n C8 H12 PEX sing 262 n n C8 H13 PEX sing 263 n n C9 C10 PEX sing 264 n n C9 H14 PEX sing 265 n n C9 H15 PEX sing 266 n n C10 C11 PEX sing 267 n n C10 H16 PEX sing 268 n n C10 H17 PEX sing 269 n n C11 C12 PEX sing 270 n n C11 H18 PEX sing 271 n n C11 H19 PEX sing 272 n n C12 C13 PEX sing 273 n n C12 H20 PEX sing 274 n n C12 H21 PEX sing 275 n n C13 H22 PEX sing 276 n n C13 H23 PEX sing 277 n n C13 H24 PEX sing 278 n n O6 C14 PEX sing 279 n n C14 O7 PEX doub 280 n n C14 C15 PEX sing 281 n n C15 C16 PEX sing 282 n n C15 H25 PEX sing 283 n n C15 H26 PEX sing 284 n n C16 C17 PEX sing 285 n n C16 H27 PEX sing 286 n n C16 H28 PEX sing 287 n n C17 C18 PEX sing 288 n n C17 H29 PEX sing 289 n n C17 H30 PEX sing 290 n n C18 C19 PEX sing 291 n n C18 H31 PEX sing 292 n n C18 H32 PEX sing 293 n n C19 C20 PEX sing 294 n n C19 H33 PEX sing 295 n n C19 H34 PEX sing 296 n n C20 C21 PEX sing 297 n n C20 H35 PEX sing 298 n n C20 H36 PEX sing 299 n n C21 C22 PEX sing 300 n n C21 H37 PEX sing 301 n n C21 H38 PEX sing 302 n n C22 C23 PEX sing 303 n n C22 H39 PEX sing 304 n n C22 H40 PEX sing 305 n n C23 H41 PEX sing 306 n n C23 H42 PEX sing 307 n n C23 H43 PEX sing 308 n n O8 C24 PEX sing 309 n n C24 C25 PEX sing 310 n n C24 H44 PEX sing 311 n n C24 H45 PEX sing 312 n n C25 N1 PEX sing 313 n n C25 H46 PEX sing 314 n n C25 H47 PEX sing 315 n n N1 H48 PEX sing 316 n n N1 H49 PEX sing 317 n n # _atom_sites.entry_id 8EKS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PEX A 1 801 801 PEX PEX . F 2 PEX B 1 801 801 PEX PEX . G 2 PEX C 1 801 801 PEX PEX . H 2 PEX D 1 801 801 PEX PEX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PEX . . . E 2 134.051 122.453 164.014 1 30.22 ? O1 PEX 801 A 1 HETATM 2 O O2 PEX . . . E 2 134.294 120.426 162.635 1 21.9 ? O2 PEX 801 A 1 HETATM 3 P P1 PEX . . . E 2 134.607 121.05 163.974 1 30.41 ? P1 PEX 801 A 1 HETATM 4 O O3 PEX . . . E 2 133.916 120.155 165.172 1 19.75 ? O3 PEX 801 A 1 HETATM 5 C C1 PEX . . . E 2 132.569 119.81 165.037 1 24.39 ? C1 PEX 801 A 1 HETATM 6 C C2 PEX . . . E 2 131.899 119.771 166.408 1 23.43 ? C2 PEX 801 A 1 HETATM 7 C C3 PEX . . . E 2 131.305 118.384 166.643 1 23.66 ? C3 PEX 801 A 1 HETATM 8 O O4 PEX . . . E 2 130.296 118.137 165.704 1 24.44 ? O4 PEX 801 A 1 HETATM 9 C C4 PEX . . . E 2 129.071 117.764 166.267 1 23.4 ? C4 PEX 801 A 1 HETATM 10 O O5 PEX . . . E 2 128.23 118.579 166.443 1 24.32 ? O5 PEX 801 A 1 HETATM 11 C C5 PEX . . . E 2 128.811 116.309 166.654 1 23.87 ? C5 PEX 801 A 1 HETATM 12 C C6 PEX . . . E 2 127.777 116.257 167.78 1 24.09 ? C6 PEX 801 A 1 HETATM 13 C C7 PEX . . . E 2 128.294 115.381 168.921 1 26.17 ? C7 PEX 801 A 1 HETATM 14 C C8 PEX . . . E 2 127.859 113.934 168.69 1 25.87 ? C8 PEX 801 A 1 HETATM 15 C C9 PEX . . . E 2 128.713 113 169.549 1 29.49 ? C9 PEX 801 A 1 HETATM 16 C C10 PEX . . . E 2 128.393 111.547 169.201 1 27.48 ? C10 PEX 801 A 1 HETATM 17 C C11 PEX . . . E 2 129.586 110.666 169.564 1 25.7 ? C11 PEX 801 A 1 HETATM 18 C C12 PEX . . . E 2 129.341 109.243 169.065 1 22.27 ? C12 PEX 801 A 1 HETATM 19 C C13 PEX . . . E 2 130.66 108.473 169.058 1 22.29 ? C13 PEX 801 A 1 HETATM 20 O O6 PEX . . . E 2 132.846 120.048 167.4 1 20.13 ? O6 PEX 801 A 1 HETATM 21 C C14 PEX . . . E 2 132.291 120.398 168.636 1 27.02 ? C14 PEX 801 A 1 HETATM 22 O O7 PEX . . . E 2 131.235 120.933 168.686 1 32.99 ? O7 PEX 801 A 1 HETATM 23 C C15 PEX . . . E 2 133.048 120.086 169.926 1 19.36 ? C15 PEX 801 A 1 HETATM 24 C C16 PEX . . . E 2 132.842 118.619 170.295 1 19.81 ? C16 PEX 801 A 1 HETATM 25 C C17 PEX . . . E 2 132.005 118.517 171.569 1 19.28 ? C17 PEX 801 A 1 HETATM 26 C C18 PEX . . . E 2 130.532 118.738 171.238 1 19.25 ? C18 PEX 801 A 1 HETATM 27 C C19 PEX . . . E 2 129.674 118.069 172.309 1 23.08 ? C19 PEX 801 A 1 HETATM 28 C C20 PEX . . . E 2 128.231 117.968 171.82 1 26.33 ? C20 PEX 801 A 1 HETATM 29 C C21 PEX . . . E 2 127.559 119.335 171.925 1 27.82 ? C21 PEX 801 A 1 HETATM 30 C C22 PEX . . . E 2 126.043 119.158 171.904 1 25.44 ? C22 PEX 801 A 1 HETATM 31 C C23 PEX . . . E 2 125.371 120.514 172.1 1 22.35 ? C23 PEX 801 A 1 HETATM 32 O O8 PEX . . . E 2 136.24 121.108 164.185 1 23.53 ? O8 PEX 801 A 1 HETATM 33 C C24 PEX . . . E 2 137.003 121.775 163.223 1 18.71 ? C24 PEX 801 A 1 HETATM 34 C C25 PEX . . . E 2 138.441 121.91 163.715 1 14.5 ? C25 PEX 801 A 1 HETATM 35 N N1 PEX . . . E 2 139.266 122.439 162.644 1 12.89 ? N1 PEX 801 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #