data_8EL2
#
_model_server_result.job_id            i0BYpIl-ZqPH9HiDVHyu9A 
_model_server_result.datetime_utc      '2024-11-15 14:23:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8el2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":601}' 
#
_entry.id    8EL2 
#
_exptl.entry_id    8EL2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8EL2 
_cell.length_a            140.3 
_cell.length_b            140.3 
_cell.length_c            202.75 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EL2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,J 1 1 
C,D,F,I,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 149 H CYS 149 1_555 A SG CYS 205 H CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 B SG CYS 22 L CYS 22 1_555 B SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
disulf ? disulf4 B SG CYS 138 L CYS 138 1_555 B SG CYS 197 L CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 C SG CYS 22 I CYS 22 1_555 C SG CYS 96 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 C SG CYS 149 I CYS 149 1_555 C SG CYS 205 I CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf7 D SG CYS 22 K CYS 22 1_555 D SG CYS 90 K CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
disulf ? disulf8 D SG CYS 138 K CYS 138 1_555 D SG CYS 197 K CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 E SG CYS 63 A CYS 379 1_555 E SG CYS 116 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 E SG CYS 75 A CYS 391 1_555 E SG CYS 209 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf11 E SG CYS 164 A CYS 480 1_555 E SG CYS 172 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf12 F SG CYS 20 B CYS 336 1_555 F SG CYS 45 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf13 F SG CYS 63 B CYS 379 1_555 F SG CYS 116 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf14 F SG CYS 75 B CYS 391 1_555 F SG CYS 209 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf15 F SG CYS 164 B CYS 480 1_555 F SG CYS 172 B CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 E ND2 ASN 27 A ASN 343 1_555 J C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 248 n n 
C1 O1 NAG sing 249 n n 
C1 O5 NAG sing 250 n n 
C1 H1 NAG sing 251 n n 
C2 C3 NAG sing 252 n n 
C2 N2 NAG sing 253 n n 
C2 H2 NAG sing 254 n n 
C3 C4 NAG sing 255 n n 
C3 O3 NAG sing 256 n n 
C3 H3 NAG sing 257 n n 
C4 C5 NAG sing 258 n n 
C4 O4 NAG sing 259 n n 
C4 H4 NAG sing 260 n n 
C5 C6 NAG sing 261 n n 
C5 O5 NAG sing 262 n n 
C5 H5 NAG sing 263 n n 
C6 O6 NAG sing 264 n n 
C6 H61 NAG sing 265 n n 
C6 H62 NAG sing 266 n n 
C7 C8 NAG sing 267 n n 
C7 N2 NAG sing 268 n n 
C7 O7 NAG doub 269 n n 
C8 H81 NAG sing 270 n n 
C8 H82 NAG sing 271 n n 
C8 H83 NAG sing 272 n n 
N2 HN2 NAG sing 273 n n 
O1 HO1 NAG sing 274 n n 
O3 HO3 NAG sing 275 n n 
O4 HO4 NAG sing 276 n n 
O6 HO6 NAG sing 277 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8EL2 
_atom_sites.fract_transf_matrix[1][1]    0.007128 
_atom_sites.fract_transf_matrix[1][2]    0.004115 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00823 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004932 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 GOL L 1 301 301 GOL GOL . 
H 5 ZN L 1 302 1 ZN ZN . 
I 5 ZN K 1 301 2 ZN ZN . 
J 6 NAG A 1 601 601 NAG NAG . 
K 6 NAG B 1 601 601 NAG NAG . 
L 4 GOL B 1 602 701 GOL GOL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . K 6 12.672 36.613 -18.144 1 146.42 ? C1 NAG 601 B 1 
HETATM 2 C C2 NAG . . . K 6 14.081 37.146 -17.894 1 146.53 ? C2 NAG 601 B 1 
HETATM 3 C C3 NAG . . . K 6 14.756 37.493 -19.217 1 148.33 ? C3 NAG 601 B 1 
HETATM 4 C C4 NAG . . . K 6 14.726 36.296 -20.158 1 148.4 ? C4 NAG 601 B 1 
HETATM 5 C C5 NAG . . . K 6 13.296 35.782 -20.317 1 151.6 ? C5 NAG 601 B 1 
HETATM 6 C C6 NAG . . . K 6 13.215 34.511 -21.131 1 142.05 ? C6 NAG 601 B 1 
HETATM 7 C C7 NAG . . . K 6 14.779 38.38 -15.892 1 153.12 ? C7 NAG 601 B 1 
HETATM 8 C C8 NAG . . . K 6 14.635 39.647 -15.102 1 152.47 ? C8 NAG 601 B 1 
HETATM 9 N N2 NAG . . . K 6 14.056 38.304 -17.013 1 150.13 ? N2 NAG 601 B 1 
HETATM 10 O O3 NAG . . . K 6 16.1 37.89 -18.973 1 147.67 ? O3 NAG 601 B 1 
HETATM 11 O O4 NAG . . . K 6 15.234 36.663 -21.436 1 140.79 ? O4 NAG 601 B 1 
HETATM 12 O O5 NAG . . . K 6 12.735 35.485 -19.029 1 156.15 ? O5 NAG 601 B 1 
HETATM 13 O O6 NAG . . . K 6 14.418 33.759 -21.042 1 134.85 ? O6 NAG 601 B 1 
HETATM 14 O O7 NAG . . . K 6 15.516 37.469 -15.53 1 149.66 ? O7 NAG 601 B 1 
#
_model_server_stats.io_time_ms              101 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#