data_8ELC # _model_server_result.job_id d_qTlwHXEuGI3GFmuIw4kg _model_server_result.datetime_utc '2024-12-26 20:14:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8elc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8ELC # _exptl.entry_id 8ELC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.702 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(dimethylamino)-N-{4-[(3S)-3-({4-[(8R)-2-phenylpyrazolo[1,5-a]pyridin-3-yl]pyrimidin-2-yl}amino)pyrrolidine-1-carbonyl]phenyl}butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ELC _cell.length_a 63.235 _cell.length_b 65.761 _cell.length_c 94.117 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ELC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 116 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 116 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C04 _struct_conn.ptnr2_label_comp_id Y56 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id Y56 _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.767 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H36 N8 O2' _chem_comp.formula_weight 588.702 _chem_comp.id Y56 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(dimethylamino)-N-{4-[(3S)-3-({4-[(8R)-2-phenylpyrazolo[1,5-a]pyridin-3-yl]pyrimidin-2-yl}amino)pyrrolidine-1-carbonyl]phenyl}butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 N02 Y56 sing 376 n n N02 C44 Y56 sing 377 n n N02 C03 Y56 sing 378 n n C04 C03 Y56 sing 379 n n C04 C05 Y56 sing 380 n n O43 C06 Y56 doub 381 n n C05 C06 Y56 sing 382 n n C06 N07 Y56 sing 383 n n N07 C08 Y56 sing 384 n n C08 C42 Y56 doub 385 n y C08 C09 Y56 sing 386 n y C42 C41 Y56 sing 387 n y C09 C10 Y56 doub 388 n y C41 C11 Y56 doub 389 n y C10 C11 Y56 sing 390 n y C11 C12 Y56 sing 391 n n C12 O40 Y56 doub 392 n n C12 N13 Y56 sing 393 n n C27 C26 Y56 sing 394 n y C27 C28 Y56 doub 395 n y N13 C14 Y56 sing 396 n n N13 C39 Y56 sing 397 n n C26 C25 Y56 doub 398 n y C14 C15 Y56 sing 399 n n C28 N29 Y56 sing 400 n y C25 C24 Y56 sing 401 n y C39 C16 Y56 sing 402 n n C15 C16 Y56 sing 403 n n C16 N17 Y56 sing 404 n n N29 C24 Y56 sing 405 n y N29 N30 Y56 sing 406 n y C24 C23 Y56 doub 407 n y N30 C31 Y56 doub 408 n y N17 C18 Y56 sing 409 n n C23 C22 Y56 sing 410 n n C23 C31 Y56 sing 411 n y N38 C18 Y56 doub 412 n y N38 C22 Y56 sing 413 n y C18 N19 Y56 sing 414 n y C22 C21 Y56 doub 415 n y C31 C32 Y56 sing 416 n n N19 C20 Y56 doub 417 n y C21 C20 Y56 sing 418 n y C32 C37 Y56 doub 419 n y C32 C33 Y56 sing 420 n y C37 C36 Y56 sing 421 n y C33 C34 Y56 doub 422 n y C36 C35 Y56 doub 423 n y C34 C35 Y56 sing 424 n y C01 H1 Y56 sing 425 n n C01 H2 Y56 sing 426 n n C01 H3 Y56 sing 427 n n C03 H4 Y56 sing 428 n n C03 H5 Y56 sing 429 n n C04 H6 Y56 sing 430 n n C04 H7 Y56 sing 431 n n C05 H8 Y56 sing 432 n n C05 H9 Y56 sing 433 n n C09 H10 Y56 sing 434 n n C10 H11 Y56 sing 435 n n C14 H12 Y56 sing 436 n n C14 H13 Y56 sing 437 n n C15 H14 Y56 sing 438 n n C15 H15 Y56 sing 439 n n C16 H16 Y56 sing 440 n n C20 H17 Y56 sing 441 n n C21 H18 Y56 sing 442 n n C25 H19 Y56 sing 443 n n C26 H20 Y56 sing 444 n n C27 H21 Y56 sing 445 n n C28 H22 Y56 sing 446 n n C33 H23 Y56 sing 447 n n C34 H24 Y56 sing 448 n n C35 H25 Y56 sing 449 n n C36 H26 Y56 sing 450 n n C37 H27 Y56 sing 451 n n C39 H28 Y56 sing 452 n n C39 H29 Y56 sing 453 n n C41 H30 Y56 sing 454 n n C42 H31 Y56 sing 455 n n C44 H32 Y56 sing 456 n n C44 H33 Y56 sing 457 n n C44 H34 Y56 sing 458 n n N07 H36 Y56 sing 459 n n N17 H37 Y56 sing 460 n n # _atom_sites.entry_id 8ELC _atom_sites.fract_transf_matrix[1][1] 0.015814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y56 A 1 501 1 Y56 Y56 . C 3 HOH A 1 601 42 HOH HOH . C 3 HOH A 2 602 79 HOH HOH . C 3 HOH A 3 603 60 HOH HOH . C 3 HOH A 4 604 31 HOH HOH . C 3 HOH A 5 605 20 HOH HOH . C 3 HOH A 6 606 11 HOH HOH . C 3 HOH A 7 607 81 HOH HOH . C 3 HOH A 8 608 56 HOH HOH . C 3 HOH A 9 609 28 HOH HOH . C 3 HOH A 10 610 65 HOH HOH . C 3 HOH A 11 611 21 HOH HOH . C 3 HOH A 12 612 51 HOH HOH . C 3 HOH A 13 613 46 HOH HOH . C 3 HOH A 14 614 34 HOH HOH . C 3 HOH A 15 615 22 HOH HOH . C 3 HOH A 16 616 23 HOH HOH . C 3 HOH A 17 617 14 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 77 HOH HOH . C 3 HOH A 20 620 44 HOH HOH . C 3 HOH A 21 621 75 HOH HOH . C 3 HOH A 22 622 30 HOH HOH . C 3 HOH A 23 623 32 HOH HOH . C 3 HOH A 24 624 47 HOH HOH . C 3 HOH A 25 625 8 HOH HOH . C 3 HOH A 26 626 12 HOH HOH . C 3 HOH A 27 627 38 HOH HOH . C 3 HOH A 28 628 24 HOH HOH . C 3 HOH A 29 629 15 HOH HOH . C 3 HOH A 30 630 5 HOH HOH . C 3 HOH A 31 631 82 HOH HOH . C 3 HOH A 32 632 9 HOH HOH . C 3 HOH A 33 633 13 HOH HOH . C 3 HOH A 34 634 45 HOH HOH . C 3 HOH A 35 635 36 HOH HOH . C 3 HOH A 36 636 29 HOH HOH . C 3 HOH A 37 637 35 HOH HOH . C 3 HOH A 38 638 50 HOH HOH . C 3 HOH A 39 639 17 HOH HOH . C 3 HOH A 40 640 57 HOH HOH . C 3 HOH A 41 641 48 HOH HOH . C 3 HOH A 42 642 1 HOH HOH . C 3 HOH A 43 643 3 HOH HOH . C 3 HOH A 44 644 33 HOH HOH . C 3 HOH A 45 645 19 HOH HOH . C 3 HOH A 46 646 49 HOH HOH . C 3 HOH A 47 647 2 HOH HOH . C 3 HOH A 48 648 54 HOH HOH . C 3 HOH A 49 649 16 HOH HOH . C 3 HOH A 50 650 67 HOH HOH . C 3 HOH A 51 651 4 HOH HOH . C 3 HOH A 52 652 62 HOH HOH . C 3 HOH A 53 653 39 HOH HOH . C 3 HOH A 54 654 61 HOH HOH . C 3 HOH A 55 655 55 HOH HOH . C 3 HOH A 56 656 7 HOH HOH . C 3 HOH A 57 657 10 HOH HOH . C 3 HOH A 58 658 27 HOH HOH . C 3 HOH A 59 659 64 HOH HOH . C 3 HOH A 60 660 37 HOH HOH . C 3 HOH A 61 661 26 HOH HOH . C 3 HOH A 62 662 41 HOH HOH . C 3 HOH A 63 663 52 HOH HOH . C 3 HOH A 64 664 66 HOH HOH . C 3 HOH A 65 665 68 HOH HOH . C 3 HOH A 66 666 73 HOH HOH . C 3 HOH A 67 667 72 HOH HOH . C 3 HOH A 68 668 43 HOH HOH . C 3 HOH A 69 669 53 HOH HOH . C 3 HOH A 70 670 40 HOH HOH . C 3 HOH A 71 671 71 HOH HOH . C 3 HOH A 72 672 69 HOH HOH . C 3 HOH A 73 673 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 Y56 . . . B 2 19.483 21.476 2.68 1 62.07 ? C01 Y56 501 A 1 HETATM 2 C C03 Y56 . . . B 2 19.545 22.195 4.95 1 75.82 ? C03 Y56 501 A 1 HETATM 3 C C04 Y56 . . . B 2 20.897 22.942 4.865 1 72.42 ? C04 Y56 501 A 1 HETATM 4 C C05 Y56 . . . B 2 21.385 23.44 6.219 1 68.34 ? C05 Y56 501 A 1 HETATM 5 C C06 Y56 . . . B 2 21.618 25.001 6.271 1 74.81 ? C06 Y56 501 A 1 HETATM 6 C C08 Y56 . . . B 2 21.52 25.421 8.877 1 65.11 ? C08 Y56 501 A 1 HETATM 7 C C09 Y56 . . . B 2 21.86 26.285 9.957 1 60.27 ? C09 Y56 501 A 1 HETATM 8 C C10 Y56 . . . B 2 21.724 25.877 11.321 1 56.76 ? C10 Y56 501 A 1 HETATM 9 C C11 Y56 . . . B 2 21.254 24.612 11.571 1 54.13 ? C11 Y56 501 A 1 HETATM 10 C C12 Y56 . . . B 2 21.032 23.907 12.924 1 50.66 ? C12 Y56 501 A 1 HETATM 11 C C14 Y56 . . . B 2 23.163 24.944 14.416 1 45.22 ? C14 Y56 501 A 1 HETATM 12 C C15 Y56 . . . B 2 23.185 25.043 16.025 1 48.16 ? C15 Y56 501 A 1 HETATM 13 C C16 Y56 . . . B 2 22.037 24.517 16.442 1 43.6 ? C16 Y56 501 A 1 HETATM 14 C C18 Y56 . . . B 2 21.014 23.239 18.436 1 41.65 ? C18 Y56 501 A 1 HETATM 15 C C20 Y56 . . . B 2 20.197 21.988 20.21 1 37.63 ? C20 Y56 501 A 1 HETATM 16 C C21 Y56 . . . B 2 18.917 22.158 19.673 1 30.76 ? C21 Y56 501 A 1 HETATM 17 C C22 Y56 . . . B 2 18.72 22.904 18.502 1 37.22 ? C22 Y56 501 A 1 HETATM 18 C C23 Y56 . . . B 2 17.321 23.082 17.872 1 40.42 ? C23 Y56 501 A 1 HETATM 19 C C24 Y56 . . . B 2 17.043 23.339 16.494 1 43.51 ? C24 Y56 501 A 1 HETATM 20 C C25 Y56 . . . B 2 17.885 23.537 15.338 1 44.07 ? C25 Y56 501 A 1 HETATM 21 C C26 Y56 . . . B 2 17.302 23.785 14.1 1 46.36 ? C26 Y56 501 A 1 HETATM 22 C C27 Y56 . . . B 2 15.935 23.836 13.964 1 49.25 ? C27 Y56 501 A 1 HETATM 23 C C28 Y56 . . . B 2 15.123 23.641 15.087 1 47.21 ? C28 Y56 501 A 1 HETATM 24 C C31 Y56 . . . B 2 16.051 22.963 18.507 1 42.19 ? C31 Y56 501 A 1 HETATM 25 C C32 Y56 . . . B 2 15.706 22.726 19.994 1 37.71 ? C32 Y56 501 A 1 HETATM 26 C C33 Y56 . . . B 2 16.327 23.51 20.944 1 36.5 ? C33 Y56 501 A 1 HETATM 27 C C34 Y56 . . . B 2 16.027 23.334 22.301 1 38 ? C34 Y56 501 A 1 HETATM 28 C C35 Y56 . . . B 2 15.075 22.415 22.669 1 37.88 ? C35 Y56 501 A 1 HETATM 29 C C36 Y56 . . . B 2 14.426 21.66 21.705 1 35.57 ? C36 Y56 501 A 1 HETATM 30 C C37 Y56 . . . B 2 14.746 21.816 20.357 1 39.21 ? C37 Y56 501 A 1 HETATM 31 C C39 Y56 . . . B 2 21.683 23.371 15.256 1 43.66 ? C39 Y56 501 A 1 HETATM 32 C C41 Y56 . . . B 2 20.916 23.786 10.486 1 63.44 ? C41 Y56 501 A 1 HETATM 33 C C42 Y56 . . . B 2 21.05 24.174 9.161 1 68.9 ? C42 Y56 501 A 1 HETATM 34 C C44 Y56 . . . B 2 17.423 21.742 3.925 1 65.66 ? C44 Y56 501 A 1 HETATM 35 N N02 Y56 . . . B 2 18.8 22.292 3.678 1 68.16 ? N02 Y56 501 A 1 HETATM 36 N N07 Y56 . . . B 2 21.659 25.838 7.491 1 71.52 ? N07 Y56 501 A 1 HETATM 37 N N13 Y56 . . . B 2 21.886 24.027 14.115 1 47.79 ? N13 Y56 501 A 1 HETATM 38 N N17 Y56 . . . B 2 22.19 23.84 17.728 1 38.83 ? N17 Y56 501 A 1 HETATM 39 N N19 Y56 . . . B 2 21.229 22.546 19.562 1 39.59 ? N19 Y56 501 A 1 HETATM 40 N N29 Y56 . . . B 2 15.732 23.39 16.34 1 44.24 ? N29 Y56 501 A 1 HETATM 41 N N30 Y56 . . . B 2 15.092 23.156 17.578 1 42.8 ? N30 Y56 501 A 1 HETATM 42 N N38 Y56 . . . B 2 19.802 23.411 17.921 1 38 ? N38 Y56 501 A 1 HETATM 43 O O40 Y56 . . . B 2 20.151 23.142 12.971 1 50.69 ? O40 Y56 501 A 1 HETATM 44 O O43 Y56 . . . B 2 21.777 25.581 5.226 1 79.53 ? O43 Y56 501 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 487 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #