data_8ELE # _model_server_result.job_id FITEhTPfjUSQFLsqGvP3rA _model_server_result.datetime_utc '2024-12-01 10:43:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ele # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1001}' # _entry.id 8ELE # _exptl.entry_id 8ELE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ELE _cell.length_a 137.825 _cell.length_b 178.729 _cell.length_c 180.875 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ELE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,R 1 1 B,K,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 656 A CYS 654 1_555 A SG CYS 670 A CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 B SG CYS 656 B CYS 654 1_555 B SG CYS 670 B CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B ND2 ASN 47 B ASN 45 1_555 L C1 NAG . B NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8ELE _atom_sites.fract_transf_matrix[1][1] 0.007256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WM0 A 1 901 901 WM0 LIG . D 3 GOL A 1 902 1001 GOL GOL . E 4 SO4 A 1 903 1 SO4 SO4 . F 4 SO4 A 1 904 2 SO4 SO4 . G 4 SO4 A 1 905 3 SO4 SO4 . H 4 SO4 A 1 906 4 SO4 SO4 . I 4 SO4 A 1 907 5 SO4 SO4 . J 4 SO4 A 1 908 6 SO4 SO4 . K 3 GOL B 1 1001 1001 GOL GOL . L 5 NAG B 1 1002 1101 NAG NAG . M 2 WM0 B 1 1003 1201 WM0 LIG . N 4 SO4 B 1 1004 7 SO4 SO4 . O 4 SO4 B 1 1005 8 SO4 SO4 . P 4 SO4 B 1 1006 9 SO4 SO4 . Q 4 SO4 B 1 1007 10 SO4 SO4 . R 6 HOH A 1 1001 31 HOH HOH . R 6 HOH A 2 1002 16 HOH HOH . R 6 HOH A 3 1003 17 HOH HOH . R 6 HOH A 4 1004 33 HOH HOH . R 6 HOH A 5 1005 5 HOH HOH . R 6 HOH A 6 1006 5 HOH HOH . R 6 HOH A 7 1007 1 HOH HOH . R 6 HOH A 8 1008 24 HOH HOH . R 6 HOH A 9 1009 7 HOH HOH . R 6 HOH A 10 1010 25 HOH HOH . R 6 HOH A 11 1011 36 HOH HOH . R 6 HOH A 12 1012 26 HOH HOH . R 6 HOH A 13 1013 8 HOH HOH . R 6 HOH A 14 1014 37 HOH HOH . S 6 HOH B 1 1101 119 HOH HOH . S 6 HOH B 2 1102 38 HOH HOH . S 6 HOH B 3 1103 14 HOH HOH . S 6 HOH B 4 1104 3 HOH HOH . S 6 HOH B 5 1105 11 HOH HOH . S 6 HOH B 6 1106 2 HOH HOH . S 6 HOH B 7 1107 34 HOH HOH . S 6 HOH B 8 1108 23 HOH HOH . S 6 HOH B 9 1109 18 HOH HOH . S 6 HOH B 10 1110 20 HOH HOH . S 6 HOH B 11 1111 10 HOH HOH . S 6 HOH B 12 1112 9 HOH HOH . S 6 HOH B 13 1113 35 HOH HOH . S 6 HOH B 14 1114 6 HOH HOH . S 6 HOH B 15 1115 29 HOH HOH . S 6 HOH B 16 1116 15 HOH HOH . S 6 HOH B 17 1117 39 HOH HOH . S 6 HOH B 18 1118 30 HOH HOH . S 6 HOH B 19 1119 13 HOH HOH . S 6 HOH B 20 1120 19 HOH HOH . S 6 HOH B 21 1121 22 HOH HOH . S 6 HOH B 22 1122 4 HOH HOH . S 6 HOH B 23 1123 27 HOH HOH . S 6 HOH B 24 1124 32 HOH HOH . S 6 HOH B 25 1125 12 HOH HOH . S 6 HOH B 26 1126 28 HOH HOH . S 6 HOH B 27 1127 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 3 -20.815 -55.292 -34.696 1 74.88 ? C1 GOL 1001 B 1 HETATM 2 O O1 GOL . . . K 3 -21.982 -55.428 -33.89 1 88.23 ? O1 GOL 1001 B 1 HETATM 3 C C2 GOL . . . K 3 -20.278 -53.878 -34.688 1 60.37 ? C2 GOL 1001 B 1 HETATM 4 O O2 GOL . . . K 3 -19.284 -53.758 -33.681 1 50.08 ? O2 GOL 1001 B 1 HETATM 5 C C3 GOL . . . K 3 -21.34 -52.818 -34.495 1 65.9 ? C3 GOL 1001 B 1 HETATM 6 O O3 GOL . . . K 3 -20.928 -51.539 -34.995 1 66.51 ? O3 GOL 1001 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #