data_8ELE # _model_server_result.job_id El6zFVWLm1cwOmmfEPFvzw _model_server_result.datetime_utc '2024-12-01 10:37:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ele # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1002}' # _entry.id 8ELE # _exptl.entry_id 8ELE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ELE _cell.length_a 137.825 _cell.length_b 178.729 _cell.length_c 180.875 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ELE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,R 1 1 B,K,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 656 A CYS 654 1_555 A SG CYS 670 A CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 B SG CYS 656 B CYS 654 1_555 B SG CYS 670 B CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B ND2 ASN 47 B ASN 45 1_555 L C1 NAG . B NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8ELE _atom_sites.fract_transf_matrix[1][1] 0.007256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WM0 A 1 901 901 WM0 LIG . D 3 GOL A 1 902 1001 GOL GOL . E 4 SO4 A 1 903 1 SO4 SO4 . F 4 SO4 A 1 904 2 SO4 SO4 . G 4 SO4 A 1 905 3 SO4 SO4 . H 4 SO4 A 1 906 4 SO4 SO4 . I 4 SO4 A 1 907 5 SO4 SO4 . J 4 SO4 A 1 908 6 SO4 SO4 . K 3 GOL B 1 1001 1001 GOL GOL . L 5 NAG B 1 1002 1101 NAG NAG . M 2 WM0 B 1 1003 1201 WM0 LIG . N 4 SO4 B 1 1004 7 SO4 SO4 . O 4 SO4 B 1 1005 8 SO4 SO4 . P 4 SO4 B 1 1006 9 SO4 SO4 . Q 4 SO4 B 1 1007 10 SO4 SO4 . R 6 HOH A 1 1001 31 HOH HOH . R 6 HOH A 2 1002 16 HOH HOH . R 6 HOH A 3 1003 17 HOH HOH . R 6 HOH A 4 1004 33 HOH HOH . R 6 HOH A 5 1005 5 HOH HOH . R 6 HOH A 6 1006 5 HOH HOH . R 6 HOH A 7 1007 1 HOH HOH . R 6 HOH A 8 1008 24 HOH HOH . R 6 HOH A 9 1009 7 HOH HOH . R 6 HOH A 10 1010 25 HOH HOH . R 6 HOH A 11 1011 36 HOH HOH . R 6 HOH A 12 1012 26 HOH HOH . R 6 HOH A 13 1013 8 HOH HOH . R 6 HOH A 14 1014 37 HOH HOH . S 6 HOH B 1 1101 119 HOH HOH . S 6 HOH B 2 1102 38 HOH HOH . S 6 HOH B 3 1103 14 HOH HOH . S 6 HOH B 4 1104 3 HOH HOH . S 6 HOH B 5 1105 11 HOH HOH . S 6 HOH B 6 1106 2 HOH HOH . S 6 HOH B 7 1107 34 HOH HOH . S 6 HOH B 8 1108 23 HOH HOH . S 6 HOH B 9 1109 18 HOH HOH . S 6 HOH B 10 1110 20 HOH HOH . S 6 HOH B 11 1111 10 HOH HOH . S 6 HOH B 12 1112 9 HOH HOH . S 6 HOH B 13 1113 35 HOH HOH . S 6 HOH B 14 1114 6 HOH HOH . S 6 HOH B 15 1115 29 HOH HOH . S 6 HOH B 16 1116 15 HOH HOH . S 6 HOH B 17 1117 39 HOH HOH . S 6 HOH B 18 1118 30 HOH HOH . S 6 HOH B 19 1119 13 HOH HOH . S 6 HOH B 20 1120 19 HOH HOH . S 6 HOH B 21 1121 22 HOH HOH . S 6 HOH B 22 1122 4 HOH HOH . S 6 HOH B 23 1123 27 HOH HOH . S 6 HOH B 24 1124 32 HOH HOH . S 6 HOH B 25 1125 12 HOH HOH . S 6 HOH B 26 1126 28 HOH HOH . S 6 HOH B 27 1127 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 5 -31.913 -50.634 -17.771 1 103.63 ? C1 NAG 1002 B 1 HETATM 2 C C2 NAG . . . L 5 -31.088 -51.175 -18.957 1 98.84 ? C2 NAG 1002 B 1 HETATM 3 C C3 NAG . . . L 5 -32.009 -51.643 -20.114 1 94.23 ? C3 NAG 1002 B 1 HETATM 4 C C4 NAG . . . L 5 -33.224 -52.512 -19.721 1 100.75 ? C4 NAG 1002 B 1 HETATM 5 C C5 NAG . . . L 5 -33.935 -51.929 -18.498 1 99.62 ? C5 NAG 1002 B 1 HETATM 6 C C6 NAG . . . L 5 -34.897 -52.964 -17.923 1 96.53 ? C6 NAG 1002 B 1 HETATM 7 C C7 NAG . . . L 5 -28.937 -50.392 -19.895 1 87.15 ? C7 NAG 1002 B 1 HETATM 8 C C8 NAG . . . L 5 -28.318 -49.384 -20.831 1 83.22 ? C8 NAG 1002 B 1 HETATM 9 N N2 NAG . . . L 5 -30.197 -50.148 -19.509 1 96.82 ? N2 NAG 1002 B 1 HETATM 10 O O3 NAG . . . L 5 -31.217 -52.371 -21.046 1 84.38 ? O3 NAG 1002 B 1 HETATM 11 O O4 NAG . . . L 5 -34.187 -52.682 -20.795 1 88.22 ? O4 NAG 1002 B 1 HETATM 12 O O5 NAG . . . L 5 -32.998 -51.552 -17.475 1 102.39 ? O5 NAG 1002 B 1 HETATM 13 O O6 NAG . . . L 5 -35.891 -52.304 -17.134 1 100.57 ? O6 NAG 1002 B 1 HETATM 14 O O7 NAG . . . L 5 -28.353 -51.413 -19.58 1 81.84 ? O7 NAG 1002 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #