data_8ELQ # _model_server_result.job_id BnH9P0XSZIbrtdlqdjM2cQ _model_server_result.datetime_utc '2024-11-21 08:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8elq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 8ELQ # _exptl.entry_id 8ELQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ELQ _cell.length_a 78.543 _cell.length_b 140.387 _cell.length_c 142.095 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ELQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 336 1_555 A SG CYS 29 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 47 A CYS 379 1_555 A SG CYS 100 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 59 A CYS 391 1_555 A SG CYS 193 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 148 A CYS 480 1_555 A SG CYS 156 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 49 B CYS 49 1_555 B SG CYS 70 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 C SG CYS 22 H CYS 22 1_555 C SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 C SG CYS 144 H CYS 140 1_555 C SG CYS 200 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 D SG CYS 23 L CYS 23 1_555 D SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 D SG CYS 136 L CYS 134 1_555 D SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 11 A ASN 343 1_555 E C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8ELQ _atom_sites.fract_transf_matrix[1][1] 0.012732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 601 628 NAG NAG . F 6 HOH A 1 701 25 HOH HOH . F 6 HOH A 2 702 49 HOH HOH . F 6 HOH A 3 703 7 HOH HOH . F 6 HOH A 4 704 38 HOH HOH . F 6 HOH A 5 705 59 HOH HOH . F 6 HOH A 6 706 26 HOH HOH . F 6 HOH A 7 707 9 HOH HOH . F 6 HOH A 8 708 15 HOH HOH . F 6 HOH A 9 709 12 HOH HOH . F 6 HOH A 10 710 16 HOH HOH . F 6 HOH A 11 711 6 HOH HOH . F 6 HOH A 12 712 39 HOH HOH . F 6 HOH A 13 713 30 HOH HOH . F 6 HOH A 14 714 24 HOH HOH . F 6 HOH A 15 715 28 HOH HOH . F 6 HOH A 16 716 32 HOH HOH . F 6 HOH A 17 717 2 HOH HOH . F 6 HOH A 18 718 50 HOH HOH . F 6 HOH A 19 719 51 HOH HOH . F 6 HOH A 20 720 35 HOH HOH . F 6 HOH A 21 721 56 HOH HOH . F 6 HOH A 22 722 18 HOH HOH . F 6 HOH A 23 723 4 HOH HOH . F 6 HOH A 24 724 1 HOH HOH . F 6 HOH A 25 725 61 HOH HOH . F 6 HOH A 26 726 11 HOH HOH . G 6 HOH B 1 201 23 HOH HOH . G 6 HOH B 2 202 42 HOH HOH . G 6 HOH B 3 203 29 HOH HOH . G 6 HOH B 4 204 53 HOH HOH . G 6 HOH B 5 205 19 HOH HOH . G 6 HOH B 6 206 21 HOH HOH . G 6 HOH B 7 207 52 HOH HOH . G 6 HOH B 8 208 57 HOH HOH . G 6 HOH B 9 209 48 HOH HOH . G 6 HOH B 10 210 14 HOH HOH . G 6 HOH B 11 211 10 HOH HOH . G 6 HOH B 12 212 36 HOH HOH . G 6 HOH B 13 213 60 HOH HOH . H 6 HOH H 1 301 22 HOH HOH . H 6 HOH H 2 302 65 HOH HOH . H 6 HOH H 3 303 58 HOH HOH . H 6 HOH H 4 304 43 HOH HOH . H 6 HOH H 5 305 47 HOH HOH . H 6 HOH H 6 306 64 HOH HOH . H 6 HOH H 7 307 55 HOH HOH . H 6 HOH H 8 308 20 HOH HOH . H 6 HOH H 9 309 34 HOH HOH . H 6 HOH H 10 310 5 HOH HOH . H 6 HOH H 11 311 54 HOH HOH . H 6 HOH H 12 312 46 HOH HOH . H 6 HOH H 13 313 63 HOH HOH . I 6 HOH L 1 301 41 HOH HOH . I 6 HOH L 2 302 31 HOH HOH . I 6 HOH L 3 303 37 HOH HOH . I 6 HOH L 4 304 45 HOH HOH . I 6 HOH L 5 305 66 HOH HOH . I 6 HOH L 6 306 40 HOH HOH . I 6 HOH L 7 307 17 HOH HOH . I 6 HOH L 8 308 3 HOH HOH . I 6 HOH L 9 309 13 HOH HOH . I 6 HOH L 10 310 44 HOH HOH . I 6 HOH L 11 311 33 HOH HOH . I 6 HOH L 12 312 27 HOH HOH . I 6 HOH L 13 313 62 HOH HOH . I 6 HOH L 14 314 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 17.993 -1.543 10.529 1 45.85 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . E 5 18.302 -1.754 12.014 1 50.68 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . E 5 19.779 -1.482 12.295 1 55.21 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . E 5 20.664 -2.293 11.358 1 59.08 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . E 5 20.265 -2.033 9.91 1 49.87 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . E 5 21.032 -2.883 8.923 1 54.89 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . E 5 16.826 -1.346 13.934 1 50.43 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . E 5 16.006 -0.33 14.671 1 42.99 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . E 5 17.463 -0.905 12.844 1 57.95 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . E 5 20.072 -1.825 13.644 1 53.07 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . E 5 22.029 -1.935 11.542 1 57.06 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . E 5 18.876 -2.345 9.732 1 55.2 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . E 5 20.723 -4.261 9.074 1 57.49 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . E 5 16.907 -2.512 14.308 1 56.65 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #