data_8ELR
#
_model_server_result.job_id            YLMbj5jbEbpTJNlAgPlwWA 
_model_server_result.datetime_utc      '2024-11-17 01:38:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8elr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    8ELR 
#
_exptl.entry_id    8ELR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8ELR 
_cell.length_a            39.258 
_cell.length_b            39.258 
_cell.length_c            157.984 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ELR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc2 A O ASN 26 A ASN 26 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc3 A O ARG 102 A ARG 102 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc4 A OD2 ASP 105 A ASP 105 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc5 A OD2 ASP 107 A ASP 107 1_555 E CA CA . A CA 204 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc6 A OD1 ASP 108 A ASP 108 1_555 E CA CA . A CA 204 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc7 A OD2 ASP 108 A ASP 108 1_555 E CA CA . A CA 204 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc8 B MG MG . A MG 201 1_555 C O2B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc9 B MG MG . A MG 201 1_555 C O2G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc10 B MG MG . A MG 201 1_555 F O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc11 B MG MG . A MG 201 1_555 F O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc12 D MG MG . A MG 203 1_555 F O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc13 D MG MG . A MG 203 1_555 F O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc14 D MG MG . A MG 203 1_555 F O HOH . A HOH 339 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc15 E CA CA . A CA 204 1_555 F O HOH . A HOH 320 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? 
metalc ? metalc16 E CA CA . A CA 204 1_555 F O HOH . A HOH 364 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     8ELR 
_atom_sites.fract_transf_matrix[1][1]    0.025473 
_atom_sites.fract_transf_matrix[1][2]    0.014707 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029413 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00633 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 201 167 MG MG . 
C 3 GNP A 1 202 168 GNP GNP . 
D 2 MG A 1 203 169 MG MG . 
E 4 CA A 1 204 170 CA CA . 
F 5 HOH A 1 301 203 HOH HOH . 
F 5 HOH A 2 302 176 HOH HOH . 
F 5 HOH A 3 303 179 HOH HOH . 
F 5 HOH A 4 304 202 HOH HOH . 
F 5 HOH A 5 305 241 HOH HOH . 
F 5 HOH A 6 306 192 HOH HOH . 
F 5 HOH A 7 307 217 HOH HOH . 
F 5 HOH A 8 308 228 HOH HOH . 
F 5 HOH A 9 309 197 HOH HOH . 
F 5 HOH A 10 310 185 HOH HOH . 
F 5 HOH A 11 311 173 HOH HOH . 
F 5 HOH A 12 312 174 HOH HOH . 
F 5 HOH A 13 313 212 HOH HOH . 
F 5 HOH A 14 314 220 HOH HOH . 
F 5 HOH A 15 315 172 HOH HOH . 
F 5 HOH A 16 316 239 HOH HOH . 
F 5 HOH A 17 317 188 HOH HOH . 
F 5 HOH A 18 318 216 HOH HOH . 
F 5 HOH A 19 319 191 HOH HOH . 
F 5 HOH A 20 320 247 HOH HOH . 
F 5 HOH A 21 321 223 HOH HOH . 
F 5 HOH A 22 322 184 HOH HOH . 
F 5 HOH A 23 323 183 HOH HOH . 
F 5 HOH A 24 324 175 HOH HOH . 
F 5 HOH A 25 325 186 HOH HOH . 
F 5 HOH A 26 326 196 HOH HOH . 
F 5 HOH A 27 327 245 HOH HOH . 
F 5 HOH A 28 328 189 HOH HOH . 
F 5 HOH A 29 329 182 HOH HOH . 
F 5 HOH A 30 330 207 HOH HOH . 
F 5 HOH A 31 331 171 HOH HOH . 
F 5 HOH A 32 332 206 HOH HOH . 
F 5 HOH A 33 333 177 HOH HOH . 
F 5 HOH A 34 334 190 HOH HOH . 
F 5 HOH A 35 335 219 HOH HOH . 
F 5 HOH A 36 336 181 HOH HOH . 
F 5 HOH A 37 337 178 HOH HOH . 
F 5 HOH A 38 338 201 HOH HOH . 
F 5 HOH A 39 339 229 HOH HOH . 
F 5 HOH A 40 340 211 HOH HOH . 
F 5 HOH A 41 341 193 HOH HOH . 
F 5 HOH A 42 342 187 HOH HOH . 
F 5 HOH A 43 343 224 HOH HOH . 
F 5 HOH A 44 344 215 HOH HOH . 
F 5 HOH A 45 345 198 HOH HOH . 
F 5 HOH A 46 346 218 HOH HOH . 
F 5 HOH A 47 347 240 HOH HOH . 
F 5 HOH A 48 348 210 HOH HOH . 
F 5 HOH A 49 349 243 HOH HOH . 
F 5 HOH A 50 350 221 HOH HOH . 
F 5 HOH A 51 351 195 HOH HOH . 
F 5 HOH A 52 352 233 HOH HOH . 
F 5 HOH A 53 353 199 HOH HOH . 
F 5 HOH A 54 354 208 HOH HOH . 
F 5 HOH A 55 355 209 HOH HOH . 
F 5 HOH A 56 356 180 HOH HOH . 
F 5 HOH A 57 357 204 HOH HOH . 
F 5 HOH A 58 358 225 HOH HOH . 
F 5 HOH A 59 359 194 HOH HOH . 
F 5 HOH A 60 360 231 HOH HOH . 
F 5 HOH A 61 361 237 HOH HOH . 
F 5 HOH A 62 362 200 HOH HOH . 
F 5 HOH A 63 363 226 HOH HOH . 
F 5 HOH A 64 364 230 HOH HOH . 
F 5 HOH A 65 365 232 HOH HOH . 
F 5 HOH A 66 366 246 HOH HOH . 
F 5 HOH A 67 367 244 HOH HOH . 
F 5 HOH A 68 368 222 HOH HOH . 
F 5 HOH A 69 369 214 HOH HOH . 
F 5 HOH A 70 370 236 HOH HOH . 
F 5 HOH A 71 371 234 HOH HOH . 
F 5 HOH A 72 372 205 HOH HOH . 
F 5 HOH A 73 373 213 HOH HOH . 
F 5 HOH A 74 374 227 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 5.002 14.095 -4.666 1 29.73 ? PG GNP 202 A 1 
HETATM 2 O O1G GNP . . . C 3 5.462 13.956 -3.226 1 26.93 ? O1G GNP 202 A 1 
HETATM 3 O O2G GNP . . . C 3 6.133 14.354 -5.608 1 27.48 ? O2G GNP 202 A 1 
HETATM 4 O O3G GNP . . . C 3 3.976 15.203 -4.67 1 24.95 ? O3G GNP 202 A 1 
HETATM 5 N N3B GNP . . . C 3 4.305 12.718 -5.109 1 25.08 ? N3B GNP 202 A 1 
HETATM 6 P PB GNP . . . C 3 3.746 12.319 -6.573 1 26.72 ? PB GNP 202 A 1 
HETATM 7 O O1B GNP . . . C 3 2.443 12.974 -6.787 1 23.62 ? O1B GNP 202 A 1 
HETATM 8 O O2B GNP . . . C 3 4.791 12.593 -7.597 1 23.32 ? O2B GNP 202 A 1 
HETATM 9 O O3A GNP . . . C 3 3.43 10.809 -6.543 1 22.61 ? O3A GNP 202 A 1 
HETATM 10 P PA GNP . . . C 3 4.336 9.653 -6.999 1 27 ? PA GNP 202 A 1 
HETATM 11 O O1A GNP . . . C 3 4.399 9.663 -8.485 1 26.7 ? O1A GNP 202 A 1 
HETATM 12 O O2A GNP . . . C 3 5.638 9.689 -6.278 1 24.45 ? O2A GNP 202 A 1 
HETATM 13 O O5' GNP . . . C 3 3.575 8.341 -6.604 1 26.64 ? O5' GNP 202 A 1 
HETATM 14 C C5' GNP . . . C 3 3.045 8.142 -5.283 1 29.12 ? C5' GNP 202 A 1 
HETATM 15 C C4' GNP . . . C 3 2.952 6.662 -4.937 1 25.39 ? C4' GNP 202 A 1 
HETATM 16 O O4' GNP . . . C 3 1.816 6.035 -5.613 1 25 ? O4' GNP 202 A 1 
HETATM 17 C C3' GNP . . . C 3 4.161 5.808 -5.304 1 32.28 ? C3' GNP 202 A 1 
HETATM 18 O O3' GNP . . . C 3 4.258 4.693 -4.431 1 28.88 ? O3' GNP 202 A 1 
HETATM 19 C C2' GNP . . . C 3 3.771 5.331 -6.705 1 33.05 ? C2' GNP 202 A 1 
HETATM 20 O O2' GNP . . . C 3 4.431 4.147 -7.084 1 27.6 ? O2' GNP 202 A 1 
HETATM 21 C C1' GNP . . . C 3 2.269 5.084 -6.555 1 28.71 ? C1' GNP 202 A 1 
HETATM 22 N N9 GNP . . . C 3 1.54 5.308 -7.8 1 28.8 ? N9 GNP 202 A 1 
HETATM 23 C C8 GNP . . . C 3 1.651 6.39 -8.641 1 24.06 ? C8 GNP 202 A 1 
HETATM 24 N N7 GNP . . . C 3 0.869 6.331 -9.689 1 26.92 ? N7 GNP 202 A 1 
HETATM 25 C C5 GNP . . . C 3 0.199 5.129 -9.525 1 27.86 ? C5 GNP 202 A 1 
HETATM 26 C C6 GNP . . . C 3 -0.773 4.519 -10.345 1 30.58 ? C6 GNP 202 A 1 
HETATM 27 O O6 GNP . . . C 3 -1.249 4.95 -11.4 1 23.76 ? O6 GNP 202 A 1 
HETATM 28 N N1 GNP . . . C 3 -1.207 3.297 -9.821 1 27.44 ? N1 GNP 202 A 1 
HETATM 29 C C2 GNP . . . C 3 -0.742 2.729 -8.648 1 31.36 ? C2 GNP 202 A 1 
HETATM 30 N N2 GNP . . . C 3 -1.268 1.537 -8.313 1 30.51 ? N2 GNP 202 A 1 
HETATM 31 N N3 GNP . . . C 3 0.173 3.292 -7.869 1 26.43 ? N3 GNP 202 A 1 
HETATM 32 C C4 GNP . . . C 3 0.593 4.487 -8.365 1 30.54 ? C4 GNP 202 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#