data_8ELV
#
_model_server_result.job_id            G2Q-yoAkX6JA2HdOgnQWfg 
_model_server_result.datetime_utc      '2024-11-23 00:45:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8elv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    8ELV 
#
_exptl.entry_id    8ELV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8ELV 
_cell.length_a            38.999 
_cell.length_b            38.999 
_cell.length_c            158.077 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ELV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? 
metalc ? metalc2 A O ASN 26 A ASN 26 1_555 E CA CA . A CA 204 1_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc3 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc4 A O ARG 102 A ARG 102 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc5 A OD1 ASP 105 A ASP 105 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc6 A OD1 ASP 107 A ASP 107 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc7 A OD1 ASP 108 A ASP 108 1_555 E CA CA . A CA 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc8 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc9 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc10 C MG MG . A MG 202 1_555 F O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc11 C MG MG . A MG 202 1_555 F O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc12 D CA CA . A CA 203 1_555 F O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc13 D CA CA . A CA 203 1_555 F O HOH . A HOH 330 1_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc14 E CA CA . A CA 204 1_555 F O HOH . A HOH 351 1_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc15 E CA CA . A CA 204 1_555 F O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     8ELV 
_atom_sites.fract_transf_matrix[1][1]    0.025642 
_atom_sites.fract_transf_matrix[1][2]    0.014804 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029608 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006326 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GNP A 1 201 167 GNP GNP . 
C 3 MG A 1 202 168 MG MG . 
D 4 CA A 1 203 242 CA CA . 
E 4 CA A 1 204 243 CA CA . 
F 5 HOH A 1 301 189 HOH HOH . 
F 5 HOH A 2 302 238 HOH HOH . 
F 5 HOH A 3 303 171 HOH HOH . 
F 5 HOH A 4 304 179 HOH HOH . 
F 5 HOH A 5 305 230 HOH HOH . 
F 5 HOH A 6 306 227 HOH HOH . 
F 5 HOH A 7 307 185 HOH HOH . 
F 5 HOH A 8 308 202 HOH HOH . 
F 5 HOH A 9 309 181 HOH HOH . 
F 5 HOH A 10 310 231 HOH HOH . 
F 5 HOH A 11 311 232 HOH HOH . 
F 5 HOH A 12 312 183 HOH HOH . 
F 5 HOH A 13 313 176 HOH HOH . 
F 5 HOH A 14 314 174 HOH HOH . 
F 5 HOH A 15 315 177 HOH HOH . 
F 5 HOH A 16 316 192 HOH HOH . 
F 5 HOH A 17 317 210 HOH HOH . 
F 5 HOH A 18 318 214 HOH HOH . 
F 5 HOH A 19 319 175 HOH HOH . 
F 5 HOH A 20 320 195 HOH HOH . 
F 5 HOH A 21 321 218 HOH HOH . 
F 5 HOH A 22 322 169 HOH HOH . 
F 5 HOH A 23 323 228 HOH HOH . 
F 5 HOH A 24 324 170 HOH HOH . 
F 5 HOH A 25 325 209 HOH HOH . 
F 5 HOH A 26 326 236 HOH HOH . 
F 5 HOH A 27 327 217 HOH HOH . 
F 5 HOH A 28 328 229 HOH HOH . 
F 5 HOH A 29 329 193 HOH HOH . 
F 5 HOH A 30 330 194 HOH HOH . 
F 5 HOH A 31 331 211 HOH HOH . 
F 5 HOH A 32 332 173 HOH HOH . 
F 5 HOH A 33 333 188 HOH HOH . 
F 5 HOH A 34 334 180 HOH HOH . 
F 5 HOH A 35 335 178 HOH HOH . 
F 5 HOH A 36 336 172 HOH HOH . 
F 5 HOH A 37 337 234 HOH HOH . 
F 5 HOH A 38 338 224 HOH HOH . 
F 5 HOH A 39 339 203 HOH HOH . 
F 5 HOH A 40 340 197 HOH HOH . 
F 5 HOH A 41 341 215 HOH HOH . 
F 5 HOH A 42 342 201 HOH HOH . 
F 5 HOH A 43 343 220 HOH HOH . 
F 5 HOH A 44 344 182 HOH HOH . 
F 5 HOH A 45 345 216 HOH HOH . 
F 5 HOH A 46 346 219 HOH HOH . 
F 5 HOH A 47 347 213 HOH HOH . 
F 5 HOH A 48 348 200 HOH HOH . 
F 5 HOH A 49 349 190 HOH HOH . 
F 5 HOH A 50 350 241 HOH HOH . 
F 5 HOH A 51 351 225 HOH HOH . 
F 5 HOH A 52 352 222 HOH HOH . 
F 5 HOH A 53 353 226 HOH HOH . 
F 5 HOH A 54 354 235 HOH HOH . 
F 5 HOH A 55 355 199 HOH HOH . 
F 5 HOH A 56 356 205 HOH HOH . 
F 5 HOH A 57 357 208 HOH HOH . 
F 5 HOH A 58 358 206 HOH HOH . 
F 5 HOH A 59 359 184 HOH HOH . 
F 5 HOH A 60 360 198 HOH HOH . 
F 5 HOH A 61 361 233 HOH HOH . 
F 5 HOH A 62 362 196 HOH HOH . 
F 5 HOH A 63 363 207 HOH HOH . 
F 5 HOH A 64 364 186 HOH HOH . 
F 5 HOH A 65 365 191 HOH HOH . 
F 5 HOH A 66 366 240 HOH HOH . 
F 5 HOH A 67 367 239 HOH HOH . 
F 5 HOH A 68 368 237 HOH HOH . 
F 5 HOH A 69 369 223 HOH HOH . 
F 5 HOH A 70 370 221 HOH HOH . 
F 5 HOH A 71 371 212 HOH HOH . 
F 5 HOH A 72 372 204 HOH HOH . 
F 5 HOH A 73 373 187 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . B 2 4.847 31.006 21.651 1 23.06 ? PG GNP 201 A 1 
HETATM 2 O O1G GNP . . . B 2 4.757 31.503 23.081 1 28.06 ? O1G GNP 201 A 1 
HETATM 3 O O2G GNP . . . B 2 4.037 31.809 20.656 1 20.96 ? O2G GNP 201 A 1 
HETATM 4 O O3G GNP . . . B 2 4.466 29.535 21.721 1 22.59 ? O3G GNP 201 A 1 
HETATM 5 N N3B GNP . . . B 2 6.377 31.122 21.23 1 22.31 ? N3B GNP 201 A 1 
HETATM 6 P PB GNP . . . B 2 7 30.79 19.796 1 23.69 ? PB GNP 201 A 1 
HETATM 7 O O1B GNP . . . B 2 7.067 29.313 19.587 1 19.96 ? O1B GNP 201 A 1 
HETATM 8 O O2B GNP . . . B 2 6.27 31.542 18.744 1 20.39 ? O2B GNP 201 A 1 
HETATM 9 O O3A GNP . . . B 2 8.447 31.325 19.869 1 21.74 ? O3A GNP 201 A 1 
HETATM 10 P PA GNP . . . B 2 8.939 32.692 19.361 1 21.74 ? PA GNP 201 A 1 
HETATM 11 O O1A GNP . . . B 2 8.909 32.756 17.875 1 17.64 ? O1A GNP 201 A 1 
HETATM 12 O O2A GNP . . . B 2 8.212 33.767 20.062 1 24.3 ? O2A GNP 201 A 1 
HETATM 13 O O5' GNP . . . B 2 10.452 32.768 19.793 1 20.55 ? O5' GNP 201 A 1 
HETATM 14 C C5' GNP . . . B 2 10.867 32.394 21.111 1 21.17 ? C5' GNP 201 A 1 
HETATM 15 C C4' GNP . . . B 2 12.229 32.987 21.467 1 21.64 ? C4' GNP 201 A 1 
HETATM 16 O O4' GNP . . . B 2 13.286 32.259 20.784 1 18.24 ? O4' GNP 201 A 1 
HETATM 17 C C3' GNP . . . B 2 12.448 34.449 21.092 1 21.17 ? C3' GNP 201 A 1 
HETATM 18 O O3' GNP . . . B 2 13.421 35.037 21.917 1 24.46 ? O3' GNP 201 A 1 
HETATM 19 C C2' GNP . . . B 2 13.016 34.304 19.69 1 31.86 ? C2' GNP 201 A 1 
HETATM 20 O O2' GNP . . . B 2 13.66 35.466 19.192 1 24 ? O2' GNP 201 A 1 
HETATM 21 C C1' GNP . . . B 2 13.957 33.107 19.891 1 21.99 ? C1' GNP 201 A 1 
HETATM 22 N N9 GNP . . . B 2 14.121 32.401 18.638 1 22.21 ? N9 GNP 201 A 1 
HETATM 23 C C8 GNP . . . B 2 13.107 32.018 17.786 1 21.04 ? C8 GNP 201 A 1 
HETATM 24 N N7 GNP . . . B 2 13.539 31.429 16.707 1 19.22 ? N7 GNP 201 A 1 
HETATM 25 C C5 GNP . . . B 2 14.916 31.425 16.849 1 17.71 ? C5 GNP 201 A 1 
HETATM 26 C C6 GNP . . . B 2 15.906 30.916 15.982 1 26.54 ? C6 GNP 201 A 1 
HETATM 27 O O6 GNP . . . B 2 15.754 30.349 14.881 1 23.91 ? O6 GNP 201 A 1 
HETATM 28 N N1 GNP . . . B 2 17.185 31.126 16.509 1 34.07 ? N1 GNP 201 A 1 
HETATM 29 C C2 GNP . . . B 2 17.463 31.749 17.711 1 25.67 ? C2 GNP 201 A 1 
HETATM 30 N N2 GNP . . . B 2 18.755 31.858 18.037 1 29.25 ? N2 GNP 201 A 1 
HETATM 31 N N3 GNP . . . B 2 16.543 32.223 18.531 1 27.38 ? N3 GNP 201 A 1 
HETATM 32 C C4 GNP . . . B 2 15.295 32.024 18.034 1 26.05 ? C4 GNP 201 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           32 
#