data_8EN9 # _model_server_result.job_id U6uJ8b7TA8_-lHSPBlxPfQ _model_server_result.datetime_utc '2024-11-04 23:14:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8en9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8EN9 # _exptl.entry_id 8EN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8EN9 _cell.length_a 95.399 _cell.length_b 95.399 _cell.length_c 136.128 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I NA NA . A NA 408 1_555 J O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc2 I NA NA . A NA 408 1_555 J O HOH . A HOH 504 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc3 I NA NA . A NA 408 1_555 J O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc4 I NA NA . A NA 408 1_555 J O HOH . A HOH 548 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc5 I NA NA . A NA 408 1_555 J O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc6 I NA NA . A NA 408 1_555 J O HOH . A HOH 554 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 8EN9 _atom_sites.fract_transf_matrix[1][1] 0.010482 _atom_sites.fract_transf_matrix[1][2] 0.006052 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 401 1 BOG OG . C 2 BOG A 1 402 2 BOG OG . D 2 BOG A 1 403 3 BOG OG . E 2 BOG A 1 404 5 BOG OG . F 2 BOG A 1 405 6 BOG OG . G 3 CL A 1 406 2 CL CL . H 3 CL A 1 407 3 CL CL . I 4 NA A 1 408 1 NA NA . J 5 HOH A 1 501 8 HOH HOH . J 5 HOH A 2 502 24 HOH HOH . J 5 HOH A 3 503 33 HOH HOH . J 5 HOH A 4 504 14 HOH HOH . J 5 HOH A 5 505 9 HOH HOH . J 5 HOH A 6 506 6 HOH HOH . J 5 HOH A 7 507 3 HOH HOH . J 5 HOH A 8 508 47 HOH HOH . J 5 HOH A 9 509 45 HOH HOH . J 5 HOH A 10 510 17 HOH HOH . J 5 HOH A 11 511 52 HOH HOH . J 5 HOH A 12 512 31 HOH HOH . J 5 HOH A 13 513 19 HOH HOH . J 5 HOH A 14 514 28 HOH HOH . J 5 HOH A 15 515 55 HOH HOH . J 5 HOH A 16 516 25 HOH HOH . J 5 HOH A 17 517 7 HOH HOH . J 5 HOH A 18 518 43 HOH HOH . J 5 HOH A 19 519 1 HOH HOH . J 5 HOH A 20 520 15 HOH HOH . J 5 HOH A 21 521 5 HOH HOH . J 5 HOH A 22 522 20 HOH HOH . J 5 HOH A 23 523 2 HOH HOH . J 5 HOH A 24 524 41 HOH HOH . J 5 HOH A 25 525 16 HOH HOH . J 5 HOH A 26 526 23 HOH HOH . J 5 HOH A 27 527 13 HOH HOH . J 5 HOH A 28 528 11 HOH HOH . J 5 HOH A 29 529 40 HOH HOH . J 5 HOH A 30 530 22 HOH HOH . J 5 HOH A 31 531 56 HOH HOH . J 5 HOH A 32 532 39 HOH HOH . J 5 HOH A 33 533 44 HOH HOH . J 5 HOH A 34 534 35 HOH HOH . J 5 HOH A 35 535 51 HOH HOH . J 5 HOH A 36 536 10 HOH HOH . J 5 HOH A 37 537 42 HOH HOH . J 5 HOH A 38 538 54 HOH HOH . J 5 HOH A 39 539 48 HOH HOH . J 5 HOH A 40 540 50 HOH HOH . J 5 HOH A 41 541 4 HOH HOH . J 5 HOH A 42 542 21 HOH HOH . J 5 HOH A 43 543 34 HOH HOH . J 5 HOH A 44 544 46 HOH HOH . J 5 HOH A 45 545 30 HOH HOH . J 5 HOH A 46 546 59 HOH HOH . J 5 HOH A 47 547 37 HOH HOH . J 5 HOH A 48 548 29 HOH HOH . J 5 HOH A 49 549 38 HOH HOH . J 5 HOH A 50 550 53 HOH HOH . J 5 HOH A 51 551 27 HOH HOH . J 5 HOH A 52 552 36 HOH HOH . J 5 HOH A 53 553 58 HOH HOH . J 5 HOH A 54 554 12 HOH HOH . J 5 HOH A 55 555 32 HOH HOH . J 5 HOH A 56 556 18 HOH HOH . J 5 HOH A 57 557 26 HOH HOH . J 5 HOH A 58 558 49 HOH HOH . J 5 HOH A 59 559 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . E 2 30.294 13.351 40.901 1 93.81 ? C1 BOG 404 A 1 HETATM 2 O O1 BOG . . . E 2 30.154 14.265 41.928 1 82.36 ? O1 BOG 404 A 1 HETATM 3 C C2 BOG . . . E 2 29.847 13.994 39.583 1 85.95 ? C2 BOG 404 A 1 HETATM 4 O O2 BOG . . . E 2 28.413 13.981 39.598 1 83.65 ? O2 BOG 404 A 1 HETATM 5 C C3 BOG . . . E 2 30.299 13.281 38.359 1 92.63 ? C3 BOG 404 A 1 HETATM 6 O O3 BOG . . . E 2 29.966 14.078 37.174 1 95.52 ? O3 BOG 404 A 1 HETATM 7 C C4 BOG . . . E 2 31.754 13.049 38.374 1 106.32 ? C4 BOG 404 A 1 HETATM 8 O O4 BOG . . . E 2 32.123 12.332 37.179 1 113.2 ? O4 BOG 404 A 1 HETATM 9 C C5 BOG . . . E 2 32.124 12.247 39.619 1 105.69 ? C5 BOG 404 A 1 HETATM 10 O O5 BOG . . . E 2 31.695 12.917 40.886 1 108.29 ? O5 BOG 404 A 1 HETATM 11 C C6 BOG . . . E 2 33.596 12.053 39.69 1 108.05 ? C6 BOG 404 A 1 HETATM 12 O O6 BOG . . . E 2 33.875 11.265 40.815 1 110.3 ? O6 BOG 404 A 1 HETATM 13 C C1' BOG . . . E 2 28.855 14.464 42.408 1 71.98 ? C1' BOG 404 A 1 HETATM 14 C C2' BOG . . . E 2 28.945 14.877 43.874 1 70.07 ? C2' BOG 404 A 1 HETATM 15 C C3' BOG . . . E 2 27.574 15.201 44.463 1 66.88 ? C3' BOG 404 A 1 HETATM 16 C C4' BOG . . . E 2 27.302 16.702 44.456 1 73.24 ? C4' BOG 404 A 1 HETATM 17 C C5' BOG . . . E 2 26.002 17.042 45.179 1 66.57 ? C5' BOG 404 A 1 HETATM 18 C C6' BOG . . . E 2 24.79 16.481 44.438 1 67.27 ? C6' BOG 404 A 1 HETATM 19 C C7' BOG . . . E 2 24.207 15.283 45.175 1 58.65 ? C7' BOG 404 A 1 HETATM 20 C C8' BOG . . . E 2 23.4 15.698 46.4 1 52.61 ? C8' BOG 404 A 1 HETATM 21 H H1 BOG . . . E 2 29.656 12.492 41.072 1 112.57 ? H1 BOG 404 A 1 HETATM 22 H H2 BOG . . . E 2 30.254 14.996 39.532 1 103.15 ? H2 BOG 404 A 1 HETATM 23 H HO2 BOG . . . E 2 28.097 13.102 39.781 1 100.38 ? HO2 BOG 404 A 1 HETATM 24 H H3 BOG . . . E 2 29.778 12.334 38.298 1 111.16 ? H3 BOG 404 A 1 HETATM 25 H HO3 BOG . . . E 2 29.144 14.522 37.307 1 114.63 ? HO3 BOG 404 A 1 HETATM 26 H H4 BOG . . . E 2 32.303 13.982 38.367 1 127.59 ? H4 BOG 404 A 1 HETATM 27 H HO4 BOG . . . E 2 32.024 11.41 37.334 1 135.84 ? HO4 BOG 404 A 1 HETATM 28 H H5 BOG . . . E 2 31.639 11.283 39.531 1 126.83 ? H5 BOG 404 A 1 HETATM 29 H H61 BOG . . . E 2 33.944 11.55 38.794 1 129.66 ? H61 BOG 404 A 1 HETATM 30 H H62 BOG . . . E 2 34.089 13.015 39.784 1 129.66 ? H62 BOG 404 A 1 HETATM 31 H HO6 BOG . . . E 2 33.324 10.497 40.804 1 132.36 ? HO6 BOG 404 A 1 HETATM 32 H "H1'1" BOG . . . E 2 28.37 15.248 41.836 1 86.37 ? "H1'1" BOG 404 A 1 HETATM 33 H "H1'2" BOG . . . E 2 28.288 13.543 42.322 1 86.37 ? "H1'2" BOG 404 A 1 HETATM 34 H "H2'1" BOG . . . E 2 29.39 14.067 44.442 1 84.09 ? "H2'1" BOG 404 A 1 HETATM 35 H "H2'2" BOG . . . E 2 29.579 15.754 43.955 1 84.09 ? "H2'2" BOG 404 A 1 HETATM 36 H "H3'1" BOG . . . E 2 27.531 14.837 45.485 1 80.25 ? "H3'1" BOG 404 A 1 HETATM 37 H "H3'2" BOG . . . E 2 26.809 14.699 43.879 1 80.25 ? "H3'2" BOG 404 A 1 HETATM 38 H "H4'1" BOG . . . E 2 28.124 17.213 44.945 1 87.89 ? "H4'1" BOG 404 A 1 HETATM 39 H "H4'2" BOG . . . E 2 27.236 17.045 43.429 1 87.89 ? "H4'2" BOG 404 A 1 HETATM 40 H "H5'1" BOG . . . E 2 26.032 16.624 46.18 1 79.88 ? "H5'1" BOG 404 A 1 HETATM 41 H "H5'2" BOG . . . E 2 25.907 18.12 45.251 1 79.88 ? "H5'2" BOG 404 A 1 HETATM 42 H "H6'1" BOG . . . E 2 25.091 16.175 43.441 1 80.72 ? "H6'1" BOG 404 A 1 HETATM 43 H "H6'2" BOG . . . E 2 24.033 17.253 44.355 1 80.72 ? "H6'2" BOG 404 A 1 HETATM 44 H "H7'1" BOG . . . E 2 25.018 14.635 45.491 1 70.37 ? "H7'1" BOG 404 A 1 HETATM 45 H "H7'2" BOG . . . E 2 23.561 14.733 44.497 1 70.37 ? "H7'2" BOG 404 A 1 HETATM 46 H "H8'1" BOG . . . E 2 23.397 16.781 46.481 1 63.13 ? "H8'1" BOG 404 A 1 HETATM 47 H "H8'2" BOG . . . E 2 23.849 15.27 47.291 1 63.13 ? "H8'2" BOG 404 A 1 HETATM 48 H "H8'3" BOG . . . E 2 22.38 15.339 46.3 1 63.13 ? "H8'3" BOG 404 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #