data_8EOG # _model_server_result.job_id YB2EiJ3WXZTYEfOzZFOOEg _model_server_result.datetime_utc '2025-01-22 04:34:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1103}' # _entry.id 8EOG # _exptl.entry_id 8EOG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EOG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG D 1105 NAG 4 n D NAG 2 A 2 NAG D 1106 NAG 4 n D NAG 3 A 3 NAG D 1107 NAG 5 n E NAG 1 B 1 NAG D 1110 NAG 5 n E NAG 2 B 2 NAG D 1111 NAG 5 n F NAG 1 E 1 NAG D 1113 NAG 5 n F NAG 2 E 2 NAG D 1114 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 277 D CYS 305 1_555 A SG CYS 1018 D CYS 1046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 328 D CYS 356 1_555 A SG CYS 1033 D CYS 1061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 378 D CYS 406 1_555 A SG CYS 1045 D CYS 1073 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 641 D CYS 669 1_555 A SG CYS 671 D CYS 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 878 D CYS 906 1_555 A SG CYS 948 D CYS 976 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 970 D CYS 998 1_555 A SG CYS 1000 D CYS 1028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 973 D CYS 1001 1_555 A SG CYS 998 D CYS 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 205 K CYS 316 1_555 B SG CYS 221 K CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 947 K CYS 1058 1_555 B SG CYS 958 K CYS 1069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 1320 K CYS 1431 1_555 B SG CYS 1336 K CYS 1447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 D O4 NAG . A NAG 2 1_555 D C1 NAG . A NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? metalc ? metalc1 A OG SER 235 D SER 263 1_555 L CA CA . D CA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? metalc ? metalc2 A OG SER 237 D SER 265 1_555 L CA CA . D CA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc3 A OG1 THR 305 D THR 333 1_555 L CA CA . D CA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc4 A O TRP 420 D TRP 448 1_555 M NA NA . D NA 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc5 L CA CA . D CA 1106 1_555 B OD2 ASP 40 K ASP 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc6 B OE1 GLU 252 K GLU 363 1_555 T CA CA . K CA 1706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc7 B OE1 GLU 595 K GLU 706 1_555 T CA CA . K CA 1706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc8 B OE2 GLU 1004 K GLU 1115 1_555 T CA CA . K CA 1706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 314 n n C1 O1 NAG sing 315 n n C1 O5 NAG sing 316 n n C1 H1 NAG sing 317 n n C2 C3 NAG sing 318 n n C2 N2 NAG sing 319 n n C2 H2 NAG sing 320 n n C3 C4 NAG sing 321 n n C3 O3 NAG sing 322 n n C3 H3 NAG sing 323 n n C4 C5 NAG sing 324 n n C4 O4 NAG sing 325 n n C4 H4 NAG sing 326 n n C5 C6 NAG sing 327 n n C5 O5 NAG sing 328 n n C5 H5 NAG sing 329 n n C6 O6 NAG sing 330 n n C6 H61 NAG sing 331 n n C6 H62 NAG sing 332 n n C7 C8 NAG sing 333 n n C7 N2 NAG sing 334 n n C7 O7 NAG doub 335 n n C8 H81 NAG sing 336 n n C8 H82 NAG sing 337 n n C8 H83 NAG sing 338 n n N2 HN2 NAG sing 339 n n O1 HO1 NAG sing 340 n n O3 HO3 NAG sing 341 n n O4 HO4 NAG sing 342 n n O6 HO6 NAG sing 343 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8EOG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 NAG D 1 1101 1102 NAG NAG . H 6 NAG D 1 1102 1103 NAG NAG . I 6 NAG D 1 1103 1104 NAG NAG . J 6 NAG D 1 1104 1109 NAG NAG . K 6 NAG D 1 1105 1115 NAG NAG . L 7 CA D 1 1106 3 CA CA . M 8 NA D 1 1107 1 NA NA . N 9 LEU D 1 1108 1 LEU UNL . O 10 CLR K 1 1701 1702 CLR CLR . P 10 CLR K 1 1702 1703 CLR CLR . Q 10 CLR K 1 1703 1704 CLR CLR . R 11 WNZ K 1 1704 1705 WNZ P12 . S 12 WO9 K 1 1705 1706 WO9 P18 . T 7 CA K 1 1706 1 CA CA . U 7 CA K 1 1707 2 CA CA . V 13 HOH K 1 1801 3 HOH HOH . V 13 HOH K 2 1802 1 HOH HOH . V 13 HOH K 3 1803 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 6 164.333 199.228 240.228 1 124.59 ? C1 NAG 1103 D 1 HETATM 2 C C2 NAG . . . I 6 163.885 197.952 239.537 1 124.59 ? C2 NAG 1103 D 1 HETATM 3 C C3 NAG . . . I 6 162.595 197.439 240.176 1 124.59 ? C3 NAG 1103 D 1 HETATM 4 C C4 NAG . . . I 6 162.742 197.357 241.692 1 124.59 ? C4 NAG 1103 D 1 HETATM 5 C C5 NAG . . . I 6 163.304 198.663 242.253 1 124.59 ? C5 NAG 1103 D 1 HETATM 6 C C6 NAG . . . I 6 163.604 198.592 243.732 1 124.59 ? C6 NAG 1103 D 1 HETATM 7 C C7 NAG . . . I 6 164.263 197.403 237.171 1 124.59 ? C7 NAG 1103 D 1 HETATM 8 C C8 NAG . . . I 6 165.123 196.279 237.665 1 124.59 ? C8 NAG 1103 D 1 HETATM 9 N N2 NAG . . . I 6 163.698 198.169 238.111 1 124.59 ? N2 NAG 1103 D 1 HETATM 10 O O3 NAG . . . I 6 162.28 196.157 239.647 1 124.59 ? O3 NAG 1103 D 1 HETATM 11 O O4 NAG . . . I 6 161.478 197.095 242.291 1 124.59 ? O4 NAG 1103 D 1 HETATM 12 O O5 NAG . . . I 6 164.539 198.972 241.593 1 124.59 ? O5 NAG 1103 D 1 HETATM 13 O O6 NAG . . . I 6 162.81 199.513 244.467 1 124.59 ? O6 NAG 1103 D 1 HETATM 14 O O7 NAG . . . I 6 164.089 197.611 235.974 1 124.59 ? O7 NAG 1103 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 14 #