data_8EOG # _model_server_result.job_id byzTMm1ADrX4bQsARrB0vA _model_server_result.datetime_utc '2025-02-02 01:06:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1108}' # _entry.id 8EOG # _exptl.entry_id 8EOG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 131.173 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LEUCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EOG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG D 1105 NAG 4 n D NAG 2 A 2 NAG D 1106 NAG 4 n D NAG 3 A 3 NAG D 1107 NAG 5 n E NAG 1 B 1 NAG D 1110 NAG 5 n E NAG 2 B 2 NAG D 1111 NAG 5 n F NAG 1 E 1 NAG D 1113 NAG 5 n F NAG 2 E 2 NAG D 1114 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 277 D CYS 305 1_555 A SG CYS 1018 D CYS 1046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 328 D CYS 356 1_555 A SG CYS 1033 D CYS 1061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 378 D CYS 406 1_555 A SG CYS 1045 D CYS 1073 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 641 D CYS 669 1_555 A SG CYS 671 D CYS 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 878 D CYS 906 1_555 A SG CYS 948 D CYS 976 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 970 D CYS 998 1_555 A SG CYS 1000 D CYS 1028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 973 D CYS 1001 1_555 A SG CYS 998 D CYS 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 205 K CYS 316 1_555 B SG CYS 221 K CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 947 K CYS 1058 1_555 B SG CYS 958 K CYS 1069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 1320 K CYS 1431 1_555 B SG CYS 1336 K CYS 1447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 D O4 NAG . A NAG 2 1_555 D C1 NAG . A NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? metalc ? metalc1 A OG SER 235 D SER 263 1_555 L CA CA . D CA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? metalc ? metalc2 A OG SER 237 D SER 265 1_555 L CA CA . D CA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc3 A OG1 THR 305 D THR 333 1_555 L CA CA . D CA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc4 A O TRP 420 D TRP 448 1_555 M NA NA . D NA 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc5 L CA CA . D CA 1106 1_555 B OD2 ASP 40 K ASP 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc6 B OE1 GLU 252 K GLU 363 1_555 T CA CA . K CA 1706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc7 B OE1 GLU 595 K GLU 706 1_555 T CA CA . K CA 1706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc8 B OE2 GLU 1004 K GLU 1115 1_555 T CA CA . K CA 1706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C6 H13 N O2' _chem_comp.formula_weight 131.173 _chem_comp.id LEU _chem_comp.mon_nstd_flag y _chem_comp.name LEUCINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LEU sing 250 n n N H LEU sing 251 n n N H2 LEU sing 252 n n CA C LEU sing 253 n n CA CB LEU sing 254 n n CA HA LEU sing 255 n n C O LEU doub 256 n n C OXT LEU sing 257 n n CB CG LEU sing 258 n n CB HB2 LEU sing 259 n n CB HB3 LEU sing 260 n n CG CD1 LEU sing 261 n n CG CD2 LEU sing 262 n n CG HG LEU sing 263 n n CD1 HD11 LEU sing 264 n n CD1 HD12 LEU sing 265 n n CD1 HD13 LEU sing 266 n n CD2 HD21 LEU sing 267 n n CD2 HD22 LEU sing 268 n n CD2 HD23 LEU sing 269 n n OXT HXT LEU sing 270 n n # _atom_sites.entry_id 8EOG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 NAG D 1 1101 1102 NAG NAG . H 6 NAG D 1 1102 1103 NAG NAG . I 6 NAG D 1 1103 1104 NAG NAG . J 6 NAG D 1 1104 1109 NAG NAG . K 6 NAG D 1 1105 1115 NAG NAG . L 7 CA D 1 1106 3 CA CA . M 8 NA D 1 1107 1 NA NA . N 9 LEU D 1 1108 1 LEU UNL . O 10 CLR K 1 1701 1702 CLR CLR . P 10 CLR K 1 1702 1703 CLR CLR . Q 10 CLR K 1 1703 1704 CLR CLR . R 11 WNZ K 1 1704 1705 WNZ P12 . S 12 WO9 K 1 1705 1706 WO9 P18 . T 7 CA K 1 1706 1 CA CA . U 7 CA K 1 1707 2 CA CA . V 13 HOH K 1 1801 3 HOH HOH . V 13 HOH K 2 1802 1 HOH HOH . V 13 HOH K 3 1803 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LEU . . . N 9 204.307 206.872 230.265 1 84.91 ? N LEU 1108 D 1 HETATM 2 C CA LEU . . . N 9 204.31 207.008 228.82 1 84.91 ? CA LEU 1108 D 1 HETATM 3 C C LEU . . . N 9 203.502 205.872 228.199 1 84.91 ? C LEU 1108 D 1 HETATM 4 O O LEU . . . N 9 202.653 206.116 227.303 1 84.91 ? O LEU 1108 D 1 HETATM 5 C CB LEU . . . N 9 205.747 206.945 228.312 1 84.91 ? CB LEU 1108 D 1 HETATM 6 C CG LEU . . . N 9 206.203 208.262 227.693 1 84.91 ? CG LEU 1108 D 1 HETATM 7 C CD1 LEU . . . N 9 207.667 208.543 228.021 1 84.91 ? CD1 LEU 1108 D 1 HETATM 8 C CD2 LEU . . . N 9 205.969 208.263 226.185 1 84.91 ? CD2 LEU 1108 D 1 HETATM 9 O OXT LEU . . . N 9 203.685 204.688 228.582 1 84.91 ? OXT LEU 1108 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 9 #