data_8EOG # _model_server_result.job_id j5lkUEpIQCF5VBoDWXy-cg _model_server_result.datetime_utc '2025-01-22 04:11:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1703}' # _entry.id 8EOG # _exptl.entry_id 8EOG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EOG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 O N N ? 10 P N N ? 10 Q N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG D 1105 NAG 4 n D NAG 2 A 2 NAG D 1106 NAG 4 n D NAG 3 A 3 NAG D 1107 NAG 5 n E NAG 1 B 1 NAG D 1110 NAG 5 n E NAG 2 B 2 NAG D 1111 NAG 5 n F NAG 1 E 1 NAG D 1113 NAG 5 n F NAG 2 E 2 NAG D 1114 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 277 D CYS 305 1_555 A SG CYS 1018 D CYS 1046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 328 D CYS 356 1_555 A SG CYS 1033 D CYS 1061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 378 D CYS 406 1_555 A SG CYS 1045 D CYS 1073 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 641 D CYS 669 1_555 A SG CYS 671 D CYS 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 878 D CYS 906 1_555 A SG CYS 948 D CYS 976 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 970 D CYS 998 1_555 A SG CYS 1000 D CYS 1028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 973 D CYS 1001 1_555 A SG CYS 998 D CYS 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 205 K CYS 316 1_555 B SG CYS 221 K CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 947 K CYS 1058 1_555 B SG CYS 958 K CYS 1069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 1320 K CYS 1431 1_555 B SG CYS 1336 K CYS 1447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 D O4 NAG . A NAG 2 1_555 D C1 NAG . A NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? metalc ? metalc1 A OG SER 235 D SER 263 1_555 L CA CA . D CA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? metalc ? metalc2 A OG SER 237 D SER 265 1_555 L CA CA . D CA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc3 A OG1 THR 305 D THR 333 1_555 L CA CA . D CA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc4 A O TRP 420 D TRP 448 1_555 M NA NA . D NA 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc5 L CA CA . D CA 1106 1_555 B OD2 ASP 40 K ASP 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc6 B OE1 GLU 252 K GLU 363 1_555 T CA CA . K CA 1706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc7 B OE1 GLU 595 K GLU 706 1_555 T CA CA . K CA 1706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc8 B OE2 GLU 1004 K GLU 1115 1_555 T CA CA . K CA 1706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8EOG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 NAG D 1 1101 1102 NAG NAG . H 6 NAG D 1 1102 1103 NAG NAG . I 6 NAG D 1 1103 1104 NAG NAG . J 6 NAG D 1 1104 1109 NAG NAG . K 6 NAG D 1 1105 1115 NAG NAG . L 7 CA D 1 1106 3 CA CA . M 8 NA D 1 1107 1 NA NA . N 9 LEU D 1 1108 1 LEU UNL . O 10 CLR K 1 1701 1702 CLR CLR . P 10 CLR K 1 1702 1703 CLR CLR . Q 10 CLR K 1 1703 1704 CLR CLR . R 11 WNZ K 1 1704 1705 WNZ P12 . S 12 WO9 K 1 1705 1706 WO9 P18 . T 7 CA K 1 1706 1 CA CA . U 7 CA K 1 1707 2 CA CA . V 13 HOH K 1 1801 3 HOH HOH . V 13 HOH K 2 1802 1 HOH HOH . V 13 HOH K 3 1803 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . Q 10 176.539 147.538 189.334 1 101.6 ? C1 CLR 1703 K 1 HETATM 2 C C2 CLR . . . Q 10 175.826 147.345 187.976 1 101.6 ? C2 CLR 1703 K 1 HETATM 3 C C3 CLR . . . Q 10 176.792 146.816 186.903 1 101.6 ? C3 CLR 1703 K 1 HETATM 4 C C4 CLR . . . Q 10 177.469 145.517 187.374 1 101.6 ? C4 CLR 1703 K 1 HETATM 5 C C5 CLR . . . Q 10 178.163 145.689 188.717 1 101.6 ? C5 CLR 1703 K 1 HETATM 6 C C6 CLR . . . Q 10 179.446 145.332 188.861 1 101.6 ? C6 CLR 1703 K 1 HETATM 7 C C7 CLR . . . Q 10 180.237 145.456 190.14 1 101.6 ? C7 CLR 1703 K 1 HETATM 8 C C8 CLR . . . Q 10 179.328 145.655 191.373 1 101.6 ? C8 CLR 1703 K 1 HETATM 9 C C9 CLR . . . Q 10 178.221 146.709 191.065 1 101.6 ? C9 CLR 1703 K 1 HETATM 10 C C10 CLR . . . Q 10 177.306 146.278 189.853 1 101.6 ? C10 CLR 1703 K 1 HETATM 11 C C11 CLR . . . Q 10 177.44 147.132 192.356 1 101.6 ? C11 CLR 1703 K 1 HETATM 12 C C12 CLR . . . Q 10 178.366 147.505 193.549 1 101.6 ? C12 CLR 1703 K 1 HETATM 13 C C13 CLR . . . Q 10 179.363 146.36 193.887 1 101.6 ? C13 CLR 1703 K 1 HETATM 14 C C14 CLR . . . Q 10 180.169 146.116 192.589 1 101.6 ? C14 CLR 1703 K 1 HETATM 15 C C15 CLR . . . Q 10 181.362 145.251 193.006 1 101.6 ? C15 CLR 1703 K 1 HETATM 16 C C16 CLR . . . Q 10 181.7 145.785 194.411 1 101.6 ? C16 CLR 1703 K 1 HETATM 17 C C17 CLR . . . Q 10 180.531 146.714 194.87 1 101.6 ? C17 CLR 1703 K 1 HETATM 18 C C18 CLR . . . Q 10 178.601 145.088 194.38 1 101.6 ? C18 CLR 1703 K 1 HETATM 19 C C19 CLR . . . Q 10 176.275 145.191 190.279 1 101.6 ? C19 CLR 1703 K 1 HETATM 20 C C20 CLR . . . Q 10 180.281 146.664 196.421 1 101.6 ? C20 CLR 1703 K 1 HETATM 21 C C21 CLR . . . Q 10 180.022 148.064 197.035 1 101.6 ? C21 CLR 1703 K 1 HETATM 22 C C22 CLR . . . Q 10 181.476 145.968 197.145 1 101.6 ? C22 CLR 1703 K 1 HETATM 23 C C23 CLR . . . Q 10 181.31 145.774 198.672 1 101.6 ? C23 CLR 1703 K 1 HETATM 24 C C24 CLR . . . Q 10 182.496 146.398 199.443 1 101.6 ? C24 CLR 1703 K 1 HETATM 25 C C25 CLR . . . Q 10 182.243 146.549 200.966 1 101.6 ? C25 CLR 1703 K 1 HETATM 26 C C26 CLR . . . Q 10 181.955 145.192 201.653 1 101.6 ? C26 CLR 1703 K 1 HETATM 27 C C27 CLR . . . Q 10 181.073 147.53 201.208 1 101.6 ? C27 CLR 1703 K 1 HETATM 28 O O1 CLR . . . Q 10 176.074 146.573 185.698 1 101.6 ? O1 CLR 1703 K 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #