data_8EOH # _model_server_result.job_id COirCBYyT1hXX-Gl6c62yA _model_server_result.datetime_utc '2024-12-20 19:06:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eoh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8EOH # _exptl.entry_id 8EOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EOH _cell.length_a 62.127 _cell.length_b 90.124 _cell.length_c 103.018 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 422 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 440 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.482 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8EOH _atom_sites.fract_transf_matrix[1][1] 0.016096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 600 HEM HEM . C 3 WOL A 1 602 1 WOL LIG . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 19 HOH HOH . D 4 HOH A 3 703 8 HOH HOH . D 4 HOH A 4 704 24 HOH HOH . D 4 HOH A 5 705 2 HOH HOH . D 4 HOH A 6 706 10 HOH HOH . D 4 HOH A 7 707 4 HOH HOH . D 4 HOH A 8 708 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -20.108 3.761 -9.828 1 63.78 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -18.148 2.509 -14.076 1 60.85 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -20.035 -1.971 -13.613 1 56.8 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -21.986 -0.691 -9.367 1 59.12 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -19.417 3.777 -11.014 1 62.83 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -18.692 4.887 -11.487 1 66.46 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -18.139 4.544 -12.677 1 62.95 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -18.518 3.216 -12.953 1 63.5 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -17.274 5.423 -13.544 1 59.11 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -18.55 6.216 -10.792 1 61.82 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -17.097 6.414 -10.358 1 69.65 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -16.979 7.687 -9.563 1 92.05 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -15.85 8.15 -9.285 1 91.54 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -18.01 8.283 -9.179 1 94.61 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -18.516 1.175 -14.274 1 59.03 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -18.11 0.462 -15.432 1 57.59 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -18.622 -0.793 -15.332 1 58.39 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -19.367 -0.829 -14.053 1 58.58 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -17.27 0.998 -16.564 1 56.57 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -18.469 -1.895 -16.298 1 62.45 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -17.766 -1.709 -17.412 1 57.21 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -20.723 -2.018 -12.411 1 56.23 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -21.373 -3.149 -11.893 1 55.8 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -21.93 -2.782 -10.681 1 55.58 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -21.61 -1.414 -10.467 1 61.86 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -21.446 -4.511 -12.536 1 54.52 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -22.705 -3.651 -9.777 1 55.25 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -22.926 -4.921 -10.101 1 58.19 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -21.603 0.637 -9.186 1 60.13 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -22.009 1.379 -7.988 1 65.02 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -21.49 2.611 -8.115 1 66.3 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -20.766 2.623 -9.39 1 66.4 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -22.843 0.863 -6.845 1 69.03 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -21.625 3.752 -7.142 1 68.29 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -20.426 3.76 -6.193 1 69.9 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -20.753 4.584 -4.974 1 80.3 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -19.857 5.255 -4.415 1 84.4 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -21.919 4.598 -4.522 1 83.26 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -19.322 2.763 -11.938 1 74.98 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -19.254 0.383 -13.478 1 60.97 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -20.896 -0.968 -11.549 1 71.53 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -20.863 1.422 -9.987 1 61.7 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -20.096 0.961 -11.632 1 52.5 ? FE HEM 601 A 1 HETATM 44 H HHB HEM . . . B 2 -17.53 3 -14.828 1 74.45 ? HHB HEM 601 A 1 HETATM 45 H HHC HEM . . . B 2 -19.998 -2.87 -14.229 1 69.59 ? HHC HEM 601 A 1 HETATM 46 H HHD HEM . . . B 2 -22.586 -1.174 -8.597 1 72.38 ? HHD HEM 601 A 1 HETATM 47 H HAB HEM . . . B 2 -18.928 -2.852 -16.102 1 76.37 ? HAB HEM 601 A 1 HETATM 48 H HAC HEM . . . B 2 -23.094 -3.255 -8.85 1 67.73 ? HAC HEM 601 A 1 HETATM 49 H HHA HEM . . . B 2 -20.121 4.658 -9.209 1 77.96 ? HHA HEM 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #