data_8EOI # _model_server_result.job_id 8CpLrXM53TiKU-rEt0h-6A _model_server_result.datetime_utc '2025-01-22 00:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eoi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1701}' # _entry.id 8EOI # _exptl.entry_id 8EOI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.805 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EOI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EOI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 14 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 12 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 12 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 12 n L NAG 1 L 1 NAG A 1006 NAG 12 n L NAG 2 L 2 NAG A 1007 NAG 12 n M NAG 1 M 1 NAG A 1008 NAG 12 n M NAG 2 M 2 NAG A 1009 NAG 12 n N NAG 1 N 1 NAG I 301 NAG 12 n N NAG 2 N 2 NAG I 302 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 207 A CYS 227 1_555 A SG CYS 217 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 318 A CYS 338 1_555 A SG CYS 348 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 I SG CYS 208 K CYS 316 1_555 I SG CYS 224 K CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 I SG CYS 1371 K CYS 1479 1_555 I SG CYS 1387 K CYS 1495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 350 A ASN 370 1_555 O C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 798 A ASN 818 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 893 A ASN 913 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 H ND2 ASN 133 I ASN 182 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C34 H56 O5' _chem_comp.formula_weight 544.805 _chem_comp.id 9Z9 _chem_comp.mon_nstd_flag . _chem_comp.name (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C26 9Z9 sing 1 n n O25 C24 9Z9 sing 2 n n C50 O49 9Z9 sing 3 n n O49 C48 9Z9 sing 4 n n C24 C23 9Z9 sing 5 n n C48 C23 9Z9 sing 6 n n C23 C22 9Z9 sing 7 n n C22 C21 9Z9 sing 8 n n C21 O20 9Z9 sing 9 n n O20 C17 9Z9 sing 10 n n C17 C18 9Z9 sing 11 n n C17 C16 9Z9 sing 12 n n C18 C19 9Z9 sing 13 n n C16 C13 9Z9 sing 14 n n C19 C11 9Z9 sing 15 n n C13 C11 9Z9 sing 16 n n C13 C14 9Z9 doub 17 n n C11 C12 9Z9 sing 18 n n C11 C08 9Z9 sing 19 n n C14 C15 9Z9 sing 20 n n C08 C09 9Z9 sing 21 n n C08 C07 9Z9 sing 22 n n C15 C07 9Z9 sing 23 n n C09 C10 9Z9 sing 24 n n C07 C06 9Z9 sing 25 n n C10 C02 9Z9 sing 26 n n C06 C02 9Z9 sing 27 n n C06 C05 9Z9 sing 28 n n C02 C01 9Z9 sing 29 n n C02 C03 9Z9 sing 30 n n C05 C04 9Z9 sing 31 n n C03 C04 9Z9 sing 32 n n C03 C74 9Z9 sing 33 n n C04 O72 9Z9 sing 34 n n C74 C75 9Z9 sing 35 n n C74 C73 9Z9 sing 36 n n O72 C73 9Z9 sing 37 n n C73 O80 9Z9 sing 38 n n C73 C76 9Z9 sing 39 n n O80 C79 9Z9 sing 40 n n C76 C77 9Z9 sing 41 n n C79 C78 9Z9 sing 42 n n C77 C78 9Z9 sing 43 n n C78 C81 9Z9 sing 44 n n C01 H1 9Z9 sing 45 n n C01 H2 9Z9 sing 46 n n C01 H3 9Z9 sing 47 n n C03 H4 9Z9 sing 48 n n C04 H5 9Z9 sing 49 n n C05 H6 9Z9 sing 50 n n C05 H7 9Z9 sing 51 n n C06 H8 9Z9 sing 52 n n C07 H9 9Z9 sing 53 n n C08 H10 9Z9 sing 54 n n C09 H11 9Z9 sing 55 n n C09 H12 9Z9 sing 56 n n C10 H13 9Z9 sing 57 n n C10 H14 9Z9 sing 58 n n C12 H15 9Z9 sing 59 n n C12 H16 9Z9 sing 60 n n C12 H17 9Z9 sing 61 n n C14 H18 9Z9 sing 62 n n C15 H19 9Z9 sing 63 n n C15 H20 9Z9 sing 64 n n C16 H21 9Z9 sing 65 n n C16 H22 9Z9 sing 66 n n C17 H23 9Z9 sing 67 n n C18 H24 9Z9 sing 68 n n C18 H25 9Z9 sing 69 n n C19 H26 9Z9 sing 70 n n C19 H27 9Z9 sing 71 n n C21 H28 9Z9 sing 72 n n C21 H29 9Z9 sing 73 n n C22 H30 9Z9 sing 74 n n C22 H31 9Z9 sing 75 n n C23 H32 9Z9 sing 76 n n C24 H33 9Z9 sing 77 n n C24 H34 9Z9 sing 78 n n C26 H35 9Z9 sing 79 n n C26 H36 9Z9 sing 80 n n C26 H37 9Z9 sing 81 n n C48 H38 9Z9 sing 82 n n C48 H39 9Z9 sing 83 n n C50 H40 9Z9 sing 84 n n C50 H41 9Z9 sing 85 n n C50 H42 9Z9 sing 86 n n C74 H43 9Z9 sing 87 n n C75 H44 9Z9 sing 88 n n C75 H45 9Z9 sing 89 n n C75 H46 9Z9 sing 90 n n C76 H47 9Z9 sing 91 n n C76 H48 9Z9 sing 92 n n C77 H49 9Z9 sing 93 n n C77 H50 9Z9 sing 94 n n C78 H51 9Z9 sing 95 n n C79 H52 9Z9 sing 96 n n C79 H53 9Z9 sing 97 n n C81 H54 9Z9 sing 98 n n C81 H55 9Z9 sing 99 n n C81 H56 9Z9 sing 100 n n # _atom_sites.entry_id 8EOI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 13 NAG A 1 1001 1005 NAG NAG . P 14 9Z9 K 1 1701 1701 9Z9 9Z9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 9Z9 . . . P 14 197.715 215.108 208.717 1 20 ? C01 9Z9 1701 K 1 HETATM 2 C C02 9Z9 . . . P 14 196.529 214.117 208.462 1 20 ? C02 9Z9 1701 K 1 HETATM 3 C C03 9Z9 . . . P 14 196.223 213.917 206.94 1 20 ? C03 9Z9 1701 K 1 HETATM 4 C C04 9Z9 . . . P 14 197.337 212.963 206.465 1 20 ? C04 9Z9 1701 K 1 HETATM 5 C C05 9Z9 . . . P 14 197.895 212.264 207.731 1 20 ? C05 9Z9 1701 K 1 HETATM 6 C C06 9Z9 . . . P 14 196.879 212.655 208.828 1 20 ? C06 9Z9 1701 K 1 HETATM 7 C C07 9Z9 . . . P 14 197.212 212.416 210.331 1 20 ? C07 9Z9 1701 K 1 HETATM 8 C C08 9Z9 . . . P 14 196.071 212.955 211.257 1 20 ? C08 9Z9 1701 K 1 HETATM 9 C C09 9Z9 . . . P 14 195.547 214.369 210.828 1 20 ? C09 9Z9 1701 K 1 HETATM 10 C C10 9Z9 . . . P 14 195.304 214.534 209.302 1 20 ? C10 9Z9 1701 K 1 HETATM 11 C C11 9Z9 . . . P 14 196.432 212.845 212.795 1 20 ? C11 9Z9 1701 K 1 HETATM 12 C C12 9Z9 . . . P 14 197.234 214.102 213.261 1 20 ? C12 9Z9 1701 K 1 HETATM 13 C C13 9Z9 . . . P 14 197.255 211.588 213.1 1 20 ? C13 9Z9 1701 K 1 HETATM 14 C C14 9Z9 . . . P 14 197.68 210.741 212.151 1 20 ? C14 9Z9 1701 K 1 HETATM 15 C C15 9Z9 . . . P 14 197.422 210.924 210.668 1 20 ? C15 9Z9 1701 K 1 HETATM 16 C C16 9Z9 . . . P 14 197.56 211.335 214.579 1 20 ? C16 9Z9 1701 K 1 HETATM 17 C C17 9Z9 . . . P 14 196.346 211.459 215.537 1 20 ? C17 9Z9 1701 K 1 HETATM 18 C C18 9Z9 . . . P 14 195.342 212.563 215.143 1 20 ? C18 9Z9 1701 K 1 HETATM 19 C C19 9Z9 . . . P 14 195.118 212.703 213.618 1 20 ? C19 9Z9 1701 K 1 HETATM 20 O O20 9Z9 . . . P 14 196.823 211.85 216.841 1 20 ? O20 9Z9 1701 K 1 HETATM 21 C C21 9Z9 . . . P 14 196.929 210.812 217.829 1 20 ? C21 9Z9 1701 K 1 HETATM 22 C C22 9Z9 . . . P 14 196.448 211.348 219.198 1 20 ? C22 9Z9 1701 K 1 HETATM 23 C C23 9Z9 . . . P 14 194.917 211.551 219.403 1 20 ? C23 9Z9 1701 K 1 HETATM 24 C C24 9Z9 . . . P 14 194.051 210.324 219.022 1 20 ? C24 9Z9 1701 K 1 HETATM 25 O O25 9Z9 . . . P 14 193.761 210.326 217.61 1 20 ? O25 9Z9 1701 K 1 HETATM 26 C C26 9Z9 . . . P 14 193.851 209.043 216.974 1 20 ? C26 9Z9 1701 K 1 HETATM 27 C C48 9Z9 . . . P 14 194.378 212.868 218.779 1 20 ? C48 9Z9 1701 K 1 HETATM 28 O O49 9Z9 . . . P 14 192.972 213.005 219.079 1 20 ? O49 9Z9 1701 K 1 HETATM 29 C C50 9Z9 . . . P 14 192.637 213.528 220.376 1 20 ? C50 9Z9 1701 K 1 HETATM 30 O O72 9Z9 . . . P 14 198.277 213.843 205.821 1 20 ? O72 9Z9 1701 K 1 HETATM 31 C C73 9Z9 . . . P 14 197.531 214.816 205.061 1 20 ? C73 9Z9 1701 K 1 HETATM 32 C C74 9Z9 . . . P 14 196.294 215.113 205.951 1 20 ? C74 9Z9 1701 K 1 HETATM 33 C C75 9Z9 . . . P 14 194.973 215.342 205.177 1 20 ? C75 9Z9 1701 K 1 HETATM 34 C C76 9Z9 . . . P 14 198.414 216.064 204.765 1 20 ? C76 9Z9 1701 K 1 HETATM 35 C C77 9Z9 . . . P 14 198.075 216.68 203.389 1 20 ? C77 9Z9 1701 K 1 HETATM 36 C C78 9Z9 . . . P 14 198.242 215.644 202.245 1 20 ? C78 9Z9 1701 K 1 HETATM 37 C C79 9Z9 . . . P 14 198.049 214.185 202.746 1 20 ? C79 9Z9 1701 K 1 HETATM 38 O O80 9Z9 . . . P 14 197.093 214.192 203.826 1 20 ? O80 9Z9 1701 K 1 HETATM 39 C C81 9Z9 . . . P 14 199.604 215.809 201.531 1 20 ? C81 9Z9 1701 K 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 473 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 39 #