data_8EOO
#
_model_server_result.job_id            rNF6haDWUYKDK6JldvpoCg 
_model_server_result.datetime_utc      '2024-11-09 02:33:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8eoo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":301}' 
#
_entry.id    8EOO 
#
_exptl.entry_id    8EOO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.76 
_cell.angle_gamma         90 
_cell.entry_id            8EOO 
_cell.length_a            97.066 
_cell.length_b            97.409 
_cell.length_c            141.129 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EOO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,J,K,L,M,R,S,T,U,Y,BA 1 1 
D,E,F,H,I,N,O,P,Q,V,W,X,Z,AA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 97 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf2 B SG CYS 22 B CYS 23 1_555 B SG CYS 91 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
disulf ? disulf3 B SG CYS 138 B CYS 134 1_555 B SG CYS 197 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf4 C SG CYS 6 C CYS 336 1_555 C SG CYS 31 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 C SG CYS 49 C CYS 379 1_555 C SG CYS 102 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
disulf ? disulf6 C SG CYS 61 C CYS 391 1_555 C SG CYS 195 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 D SG CYS 6 D CYS 336 1_555 D SG CYS 31 D CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 D SG CYS 49 D CYS 379 1_555 D SG CYS 102 D CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf9 D SG CYS 61 D CYS 391 1_555 D SG CYS 195 D CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf10 D SG CYS 150 D CYS 480 1_555 D SG CYS 158 D CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 E SG CYS 151 E CYS 140 1_555 E SG CYS 207 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf12 F SG CYS 22 F CYS 22 1_555 F SG CYS 97 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf13 F SG CYS 147 F CYS 140 1_555 F SG CYS 203 F CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf14 G SG CYS 22 H CYS 22 1_555 G SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf15 G SG CYS 151 H CYS 140 1_555 G SG CYS 207 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf16 H SG CYS 23 J CYS 23 1_555 H SG CYS 93 J CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf17 H SG CYS 139 J CYS 134 1_555 H SG CYS 199 J CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf18 I SG CYS 22 K CYS 23 1_555 I SG CYS 91 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf19 I SG CYS 138 K CYS 134 1_555 I SG CYS 197 K CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf20 J SG CYS 23 L CYS 23 1_555 J SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf21 J SG CYS 139 L CYS 134 1_555 J SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 C ND2 ASN 13 C ASN 343 1_555 M C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 D ND2 ASN 13 D ASN 343 1_555 N C1 NAG . D NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8EOO 
_atom_sites.fract_transf_matrix[1][1]    0.010302 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001772 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010266 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00719 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 GOL B 1 301 4 GOL GOL . 
L 6 GOL B 1 302 6 GOL GOL . 
M 7 NAG C 1 601 3 NAG NAG . 
N 7 NAG D 1 601 1 NAG NAG . 
O 6 GOL D 1 602 2 GOL GOL . 
P 6 GOL F 1 301 5 GOL GOL . 
Q 6 GOL K 1 301 8 GOL GOL . 
R 6 GOL L 1 301 7 GOL GOL . 
S 8 HOH A 1 301 63 HOH HOH . 
S 8 HOH A 2 302 64 HOH HOH . 
S 8 HOH A 3 303 23 HOH HOH . 
S 8 HOH A 4 304 50 HOH HOH . 
S 8 HOH A 5 305 62 HOH HOH . 
S 8 HOH A 6 306 56 HOH HOH . 
S 8 HOH A 7 307 61 HOH HOH . 
T 8 HOH B 1 401 53 HOH HOH . 
T 8 HOH B 2 402 60 HOH HOH . 
T 8 HOH B 3 403 55 HOH HOH . 
T 8 HOH B 4 404 31 HOH HOH . 
T 8 HOH B 5 405 1 HOH HOH . 
T 8 HOH B 6 406 65 HOH HOH . 
T 8 HOH B 7 407 52 HOH HOH . 
T 8 HOH B 8 408 54 HOH HOH . 
U 8 HOH C 1 701 16 HOH HOH . 
U 8 HOH C 2 702 49 HOH HOH . 
U 8 HOH C 3 703 74 HOH HOH . 
U 8 HOH C 4 704 30 HOH HOH . 
U 8 HOH C 5 705 73 HOH HOH . 
V 8 HOH D 1 701 13 HOH HOH . 
V 8 HOH D 2 702 18 HOH HOH . 
V 8 HOH D 3 703 36 HOH HOH . 
V 8 HOH D 4 704 19 HOH HOH . 
V 8 HOH D 5 705 71 HOH HOH . 
V 8 HOH D 6 706 48 HOH HOH . 
W 8 HOH E 1 301 3 HOH HOH . 
W 8 HOH E 2 302 28 HOH HOH . 
W 8 HOH E 3 303 39 HOH HOH . 
W 8 HOH E 4 304 4 HOH HOH . 
W 8 HOH E 5 305 58 HOH HOH . 
W 8 HOH E 6 306 47 HOH HOH . 
W 8 HOH E 7 307 6 HOH HOH . 
W 8 HOH E 8 308 37 HOH HOH . 
W 8 HOH E 9 309 38 HOH HOH . 
W 8 HOH E 10 310 46 HOH HOH . 
X 8 HOH F 1 401 70 HOH HOH . 
X 8 HOH F 2 402 33 HOH HOH . 
X 8 HOH F 3 403 68 HOH HOH . 
X 8 HOH F 4 404 32 HOH HOH . 
X 8 HOH F 5 405 34 HOH HOH . 
X 8 HOH F 6 406 67 HOH HOH . 
Y 8 HOH H 1 301 8 HOH HOH . 
Y 8 HOH H 2 302 26 HOH HOH . 
Y 8 HOH H 3 303 5 HOH HOH . 
Y 8 HOH H 4 304 10 HOH HOH . 
Y 8 HOH H 5 305 27 HOH HOH . 
Y 8 HOH H 6 306 29 HOH HOH . 
Y 8 HOH H 7 307 22 HOH HOH . 
Y 8 HOH H 8 308 17 HOH HOH . 
Y 8 HOH H 9 309 44 HOH HOH . 
Z 8 HOH J 1 301 11 HOH HOH . 
Z 8 HOH J 2 302 45 HOH HOH . 
Z 8 HOH J 3 303 41 HOH HOH . 
Z 8 HOH J 4 304 2 HOH HOH . 
Z 8 HOH J 5 305 59 HOH HOH . 
Z 8 HOH J 6 306 14 HOH HOH . 
Z 8 HOH J 7 307 51 HOH HOH . 
Z 8 HOH J 8 308 75 HOH HOH . 
Z 8 HOH J 9 309 42 HOH HOH . 
Z 8 HOH J 10 310 40 HOH HOH . 
Z 8 HOH J 11 311 76 HOH HOH . 
AA 8 HOH K 1 401 35 HOH HOH . 
AA 8 HOH K 2 402 66 HOH HOH . 
AA 8 HOH K 3 403 72 HOH HOH . 
AA 8 HOH K 4 404 7 HOH HOH . 
AA 8 HOH K 5 405 9 HOH HOH . 
AA 8 HOH K 6 406 12 HOH HOH . 
AA 8 HOH K 7 407 69 HOH HOH . 
AA 8 HOH K 8 408 20 HOH HOH . 
BA 8 HOH L 1 401 57 HOH HOH . 
BA 8 HOH L 2 402 24 HOH HOH . 
BA 8 HOH L 3 403 43 HOH HOH . 
BA 8 HOH L 4 404 15 HOH HOH . 
BA 8 HOH L 5 405 21 HOH HOH . 
BA 8 HOH L 6 406 77 HOH HOH . 
BA 8 HOH L 7 407 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . R 6 50.399 9.452 44.471 1 79.51 ? C1 GOL 301 L 1 
HETATM 2 O O1 GOL . . . R 6 50.588 8.133 44.08 1 82.21 ? O1 GOL 301 L 1 
HETATM 3 C C2 GOL . . . R 6 48.868 9.534 44.736 1 83.87 ? C2 GOL 301 L 1 
HETATM 4 O O2 GOL . . . R 6 48.508 10.513 45.681 1 84.32 ? O2 GOL 301 L 1 
HETATM 5 C C3 GOL . . . R 6 48.206 9.745 43.333 1 86.17 ? C3 GOL 301 L 1 
HETATM 6 O O3 GOL . . . R 6 46.809 9.54 43.522 1 85.87 ? O3 GOL 301 L 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#