data_8EOP # _model_server_result.job_id f6I-bIt_BaBAALvUBTnCqQ _model_server_result.datetime_utc '2024-12-02 10:56:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2207}' # _entry.id 8EOP # _exptl.entry_id 8EOP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EOP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EOP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 M N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 C 1 NAG C 2107 NAG 2 n B NAG 2 C 2 NAG C 2108 NAG 3 n C NAG 1 B 1 NAG C 2109 NAG 3 n C NAG 2 B 2 NAG C 2110 NAG 3 n C BMA 3 B 3 BMA C 2111 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 225 A CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 267 A CYS 267 1_555 A SG CYS 406 A CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 1347 A CYS 1347 1_555 A SG CYS 1359 A CYS 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 D C1 NAG . A NAG 2201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 98 A ASN 98 1_555 E C1 NAG . A NAG 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 A ND2 ASN 312 A ASN 312 1_555 F C1 NAG . A NAG 2203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 340 A ASN 340 1_555 G C1 NAG . A NAG 2204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 A ND2 ASN 1381 A ASN 1381 1_555 B C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 A ND2 ASN 1386 A ASN 1386 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 A ND2 ASN 1457 A ASN 1457 1_555 I C1 NAG . A NAG 2206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale8 A ND2 ASN 1518 A ASN 1518 1_555 H C1 NAG . A NAG 2205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 B O4 NAG . C NAG 1 1_555 B C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 C O4 NAG . B NAG 2 1_555 C C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A OG1 THR 1834 A THR 1834 1_555 L MG MG . A MG 2209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc2 A OE1 GLN 1874 A GLN 1874 1_555 L MG MG . A MG 2209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc3 J O2G ATP . A ATP 2207 1_555 L MG MG . A MG 2209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc4 J O3B ATP . A ATP 2207 1_555 L MG MG . A MG 2209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc5 K MG MG . A MG 2208 1_555 M O1B ATP . A ATP 2210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc6 K MG MG . A MG 2208 1_555 M O2B ATP . A ATP 2210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc7 K MG MG . A MG 2208 1_555 M O3B ATP . A ATP 2210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc8 K MG MG . A MG 2208 1_555 M O1G ATP . A ATP 2210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8EOP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 2201 2103 NAG NAG . E 4 NAG A 1 2202 2104 NAG NAG . F 4 NAG A 1 2203 2105 NAG NAG . G 4 NAG A 1 2204 2106 NAG NAG . H 4 NAG A 1 2205 2113 NAG NAG . I 4 NAG A 1 2206 2114 NAG NAG . J 5 ATP A 1 2207 1 ATP ATP . K 6 MG A 1 2208 2 MG MG . L 6 MG A 1 2209 3 MG MG . M 5 ATP A 1 2210 4 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 5 211.651 153.802 163.431 1 61.05 ? PG ATP 2207 A 1 HETATM 2 O O1G ATP . . . J 5 213.011 153.201 163.348 1 61.05 ? O1G ATP 2207 A 1 HETATM 3 O O2G ATP . . . J 5 210.552 152.925 162.827 1 61.05 ? O2G ATP 2207 A 1 HETATM 4 O O3G ATP . . . J 5 211.25 154.205 164.85 1 61.05 ? O3G ATP 2207 A 1 HETATM 5 P PB ATP . . . J 5 212.514 156.378 162.191 1 61.05 ? PB ATP 2207 A 1 HETATM 6 O O1B ATP . . . J 5 212.744 156.44 160.736 1 61.05 ? O1B ATP 2207 A 1 HETATM 7 O O2B ATP . . . J 5 213.766 156.295 163.06 1 61.05 ? O2B ATP 2207 A 1 HETATM 8 O O3B ATP . . . J 5 211.586 155.159 162.595 1 61.05 ? O3B ATP 2207 A 1 HETATM 9 P PA ATP . . . J 5 211.276 159.06 162.167 1 61.05 ? PA ATP 2207 A 1 HETATM 10 O O1A ATP . . . J 5 211.37 159.128 160.695 1 61.05 ? O1A ATP 2207 A 1 HETATM 11 O O2A ATP . . . J 5 209.898 159.395 162.733 1 61.05 ? O2A ATP 2207 A 1 HETATM 12 O O3A ATP . . . J 5 211.662 157.619 162.706 1 61.05 ? O3A ATP 2207 A 1 HETATM 13 O O5' ATP . . . J 5 212.335 160.008 162.853 1 61.05 ? O5' ATP 2207 A 1 HETATM 14 C C5' ATP . . . J 5 212.43 161.403 162.494 1 61.05 ? C5' ATP 2207 A 1 HETATM 15 C C4' ATP . . . J 5 213.015 162.195 163.637 1 61.05 ? C4' ATP 2207 A 1 HETATM 16 O O4' ATP . . . J 5 212.058 163.18 164.082 1 61.05 ? O4' ATP 2207 A 1 HETATM 17 C C3' ATP . . . J 5 213.38 161.395 164.883 1 61.05 ? C3' ATP 2207 A 1 HETATM 18 O O3' ATP . . . J 5 214.462 162.003 165.576 1 61.05 ? O3' ATP 2207 A 1 HETATM 19 C C2' ATP . . . J 5 212.088 161.441 165.701 1 61.05 ? C2' ATP 2207 A 1 HETATM 20 O O2' ATP . . . J 5 212.356 161.375 167.096 1 61.05 ? O2' ATP 2207 A 1 HETATM 21 C C1' ATP . . . J 5 211.533 162.825 165.35 1 61.05 ? C1' ATP 2207 A 1 HETATM 22 N N9 ATP . . . J 5 210.078 162.874 165.271 1 61.05 ? N9 ATP 2207 A 1 HETATM 23 C C8 ATP . . . J 5 209.237 161.881 164.842 1 61.05 ? C8 ATP 2207 A 1 HETATM 24 N N7 ATP . . . J 5 207.967 162.203 164.874 1 61.05 ? N7 ATP 2207 A 1 HETATM 25 C C5 ATP . . . J 5 207.971 163.501 165.361 1 61.05 ? C5 ATP 2207 A 1 HETATM 26 C C6 ATP . . . J 5 206.937 164.42 165.627 1 61.05 ? C6 ATP 2207 A 1 HETATM 27 N N6 ATP . . . J 5 205.64 164.155 165.442 1 61.05 ? N6 ATP 2207 A 1 HETATM 28 N N1 ATP . . . J 5 207.285 165.636 166.103 1 61.05 ? N1 ATP 2207 A 1 HETATM 29 C C2 ATP . . . J 5 208.578 165.905 166.297 1 61.05 ? C2 ATP 2207 A 1 HETATM 30 N N3 ATP . . . J 5 209.637 165.124 166.077 1 61.05 ? N3 ATP 2207 A 1 HETATM 31 C C4 ATP . . . J 5 209.265 163.929 165.606 1 61.05 ? C4 ATP 2207 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #