data_8EPW
#
_model_server_result.job_id            O4KxrwYMT2NI7qVMYV-zAA 
_model_server_result.datetime_utc      '2024-11-02 08:39:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8epw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    8EPW 
#
_exptl.entry_id    8EPW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EPW 
_cell.length_a            44.48 
_cell.length_b            66.8 
_cell.length_c            71.38 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EPW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc3 C O1G GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc4 C O2B GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc5 D MG MG . A MG 202 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc6 D MG MG . A MG 202 1_555 E O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     8EPW 
_atom_sites.fract_transf_matrix[1][1]    0.022482 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01497 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GNP A 1 201 1 GNP GNP . 
D 4 MG A 1 202 2 MG MG . 
E 5 HOH A 1 301 18 HOH HOH . 
E 5 HOH A 2 302 55 HOH HOH . 
E 5 HOH A 3 303 7 HOH HOH . 
E 5 HOH A 4 304 3 HOH HOH . 
E 5 HOH A 5 305 26 HOH HOH . 
E 5 HOH A 6 306 35 HOH HOH . 
E 5 HOH A 7 307 13 HOH HOH . 
E 5 HOH A 8 308 9 HOH HOH . 
E 5 HOH A 9 309 41 HOH HOH . 
E 5 HOH A 10 310 4 HOH HOH . 
E 5 HOH A 11 311 30 HOH HOH . 
E 5 HOH A 12 312 31 HOH HOH . 
E 5 HOH A 13 313 45 HOH HOH . 
E 5 HOH A 14 314 54 HOH HOH . 
E 5 HOH A 15 315 8 HOH HOH . 
E 5 HOH A 16 316 51 HOH HOH . 
E 5 HOH A 17 317 58 HOH HOH . 
E 5 HOH A 18 318 39 HOH HOH . 
E 5 HOH A 19 319 28 HOH HOH . 
E 5 HOH A 20 320 10 HOH HOH . 
E 5 HOH A 21 321 24 HOH HOH . 
E 5 HOH A 22 322 5 HOH HOH . 
E 5 HOH A 23 323 27 HOH HOH . 
E 5 HOH A 24 324 37 HOH HOH . 
E 5 HOH A 25 325 32 HOH HOH . 
E 5 HOH A 26 326 34 HOH HOH . 
E 5 HOH A 27 327 17 HOH HOH . 
E 5 HOH A 28 328 46 HOH HOH . 
E 5 HOH A 29 329 38 HOH HOH . 
E 5 HOH A 30 330 22 HOH HOH . 
E 5 HOH A 31 331 23 HOH HOH . 
E 5 HOH A 32 332 2 HOH HOH . 
E 5 HOH A 33 333 47 HOH HOH . 
E 5 HOH A 34 334 61 HOH HOH . 
E 5 HOH A 35 335 16 HOH HOH . 
E 5 HOH A 36 336 36 HOH HOH . 
E 5 HOH A 37 337 50 HOH HOH . 
E 5 HOH A 38 338 20 HOH HOH . 
E 5 HOH A 39 339 57 HOH HOH . 
F 5 HOH B 1 201 43 HOH HOH . 
F 5 HOH B 2 202 11 HOH HOH . 
F 5 HOH B 3 203 15 HOH HOH . 
F 5 HOH B 4 204 56 HOH HOH . 
F 5 HOH B 5 205 12 HOH HOH . 
F 5 HOH B 6 206 1 HOH HOH . 
F 5 HOH B 7 207 40 HOH HOH . 
F 5 HOH B 8 208 14 HOH HOH . 
F 5 HOH B 9 209 52 HOH HOH . 
F 5 HOH B 10 210 42 HOH HOH . 
F 5 HOH B 11 211 25 HOH HOH . 
F 5 HOH B 12 212 19 HOH HOH . 
F 5 HOH B 13 213 49 HOH HOH . 
F 5 HOH B 14 214 21 HOH HOH . 
F 5 HOH B 15 215 53 HOH HOH . 
F 5 HOH B 16 216 48 HOH HOH . 
F 5 HOH B 17 217 6 HOH HOH . 
F 5 HOH B 18 218 29 HOH HOH . 
F 5 HOH B 19 219 33 HOH HOH . 
F 5 HOH B 20 220 59 HOH HOH . 
F 5 HOH B 21 221 44 HOH HOH . 
F 5 HOH B 22 222 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 -13.215 -16.15 21.131 1 32.14 ? PG GNP 201 A 1 
HETATM 2 O O1G GNP . . . C 3 -13.301 -15.84 19.694 1 28.91 ? O1G GNP 201 A 1 
HETATM 3 O O2G GNP . . . C 3 -11.893 -16.688 21.444 1 25.16 ? O2G GNP 201 A 1 
HETATM 4 O O3G GNP . . . C 3 -14.214 -17.185 21.451 1 30.59 ? O3G GNP 201 A 1 
HETATM 5 N N3B GNP . . . C 3 -13.509 -14.765 21.907 1 23.7 ? N3B GNP 201 A 1 
HETATM 6 P PB GNP . . . C 3 -12.658 -13.409 21.787 1 25.51 ? PB GNP 201 A 1 
HETATM 7 O O1B GNP . . . C 3 -11.434 -13.47 22.623 1 25.12 ? O1B GNP 201 A 1 
HETATM 8 O O2B GNP . . . C 3 -12.485 -13.059 20.362 1 25.62 ? O2B GNP 201 A 1 
HETATM 9 O O3A GNP . . . C 3 -13.582 -12.269 22.37 1 28.94 ? O3A GNP 201 A 1 
HETATM 10 P PA GNP . . . C 3 -14.538 -11.181 21.713 1 24.07 ? PA GNP 201 A 1 
HETATM 11 O O1A GNP . . . C 3 -13.681 -10.226 20.995 1 22.13 ? O1A GNP 201 A 1 
HETATM 12 O O2A GNP . . . C 3 -15.58 -11.902 20.965 1 24.48 ? O2A GNP 201 A 1 
HETATM 13 O O5' GNP . . . C 3 -15.185 -10.447 22.966 1 33.26 ? O5' GNP 201 A 1 
HETATM 14 C C5' GNP . . . C 3 -15.986 -11.192 23.908 1 24.83 ? C5' GNP 201 A 1 
HETATM 15 C C4' GNP . . . C 3 -17.05 -10.305 24.508 1 31.76 ? C4' GNP 201 A 1 
HETATM 16 O O4' GNP . . . C 3 -16.43 -9.235 25.262 1 26.09 ? O4' GNP 201 A 1 
HETATM 17 C C3' GNP . . . C 3 -17.953 -9.607 23.486 1 24.45 ? C3' GNP 201 A 1 
HETATM 18 O O3' GNP . . . C 3 -19.245 -9.371 24.012 1 29.51 ? O3' GNP 201 A 1 
HETATM 19 C C2' GNP . . . C 3 -17.226 -8.281 23.282 1 26.02 ? C2' GNP 201 A 1 
HETATM 20 O O2' GNP . . . C 3 -18.052 -7.264 22.772 1 27.33 ? O2' GNP 201 A 1 
HETATM 21 C C1' GNP . . . C 3 -16.749 -7.989 24.697 1 24.67 ? C1' GNP 201 A 1 
HETATM 22 N N9 GNP . . . C 3 -15.561 -7.153 24.764 1 30.56 ? N9 GNP 201 A 1 
HETATM 23 C C8 GNP . . . C 3 -14.395 -7.364 24.083 1 20.75 ? C8 GNP 201 A 1 
HETATM 24 N N7 GNP . . . C 3 -13.481 -6.47 24.333 1 19.94 ? N7 GNP 201 A 1 
HETATM 25 C C5 GNP . . . C 3 -14.07 -5.611 25.242 1 23.42 ? C5 GNP 201 A 1 
HETATM 26 C C6 GNP . . . C 3 -13.547 -4.452 25.877 1 26.69 ? C6 GNP 201 A 1 
HETATM 27 O O6 GNP . . . C 3 -12.422 -3.959 25.767 1 23.33 ? O6 GNP 201 A 1 
HETATM 28 N N1 GNP . . . C 3 -14.477 -3.871 26.734 1 21.77 ? N1 GNP 201 A 1 
HETATM 29 C C2 GNP . . . C 3 -15.747 -4.343 26.937 1 26.08 ? C2 GNP 201 A 1 
HETATM 30 N N2 GNP . . . C 3 -16.501 -3.649 27.791 1 26.57 ? N2 GNP 201 A 1 
HETATM 31 N N3 GNP . . . C 3 -16.244 -5.429 26.348 1 24.81 ? N3 GNP 201 A 1 
HETATM 32 C C4 GNP . . . C 3 -15.358 -6.017 25.513 1 26.12 ? C4 GNP 201 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#