data_8EQ5 # _model_server_result.job_id VJv79Qz45aCPFYLGFbP0uw _model_server_result.datetime_utc '2024-11-23 22:26:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8EQ5 # _exptl.entry_id 8EQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 448.377 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4H-chromen-3-yl 6-deoxy-alpha-L-mannopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.87 _cell.angle_gamma 90 _cell.entry_id 8EQ5 _cell.length_a 83.438 _cell.length_b 41.105 _cell.length_c 99.258 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 O11' _chem_comp.formula_weight 448.377 _chem_comp.id QCT _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4H-chromen-3-yl 6-deoxy-alpha-L-mannopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms quercitrin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 C22 QCT sing 277 n n O10 C23 QCT sing 278 n n C22 C23 QCT sing 279 n n C22 C21 QCT sing 280 n n C23 C24 QCT sing 281 n n C24 O11 QCT sing 282 n n C24 C25 QCT sing 283 n n C21 O8 QCT sing 284 n n C21 O7 QCT sing 285 n n O8 C25 QCT sing 286 n n O7 C3 QCT sing 287 n n C25 C26 QCT sing 288 n n O2 C4 QCT doub 289 n n O5 C13 QCT sing 290 n n C4 C3 QCT sing 291 n n C4 C10 QCT sing 292 n n C3 C2 QCT doub 293 n n O3 C5 QCT sing 294 n n C12 C13 QCT doub 295 n y C12 C11 QCT sing 296 n y C13 C14 QCT sing 297 n y C2 C11 QCT sing 298 n n C2 O1 QCT sing 299 n n C10 C5 QCT doub 300 n y C10 C9 QCT sing 301 n y C11 C16 QCT doub 302 n y C5 C6 QCT sing 303 n y C14 O6 QCT sing 304 n n C14 C15 QCT doub 305 n y O1 C9 QCT sing 306 n n C9 C8 QCT doub 307 n y C16 C15 QCT sing 308 n y C6 C7 QCT doub 309 n y C8 C7 QCT sing 310 n y C7 O4 QCT sing 311 n n O10 H101 QCT sing 312 n n C23 H23 QCT sing 313 n n C22 H22 QCT sing 314 n n O9 HO91 QCT sing 315 n n C24 H24 QCT sing 316 n n O11 HO11 QCT sing 317 n n C25 H25 QCT sing 318 n n C26 H262 QCT sing 319 n n C26 H263 QCT sing 320 n n C26 H261 QCT sing 321 n n C21 H21 QCT sing 322 n n C12 H12 QCT sing 323 n n O5 HO51 QCT sing 324 n n O6 HO61 QCT sing 325 n n C15 H15 QCT sing 326 n n C16 H16 QCT sing 327 n n C8 H8 QCT sing 328 n n O4 HO4 QCT sing 329 n n C6 H6 QCT sing 330 n n O3 HO3 QCT sing 331 n n # _atom_sites.entry_id 8EQ5 _atom_sites.fract_transf_matrix[1][1] 0.011985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005303 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 QCT A 1 401 401 QCT QCT . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 505 505 HOH HOH . D 4 HOH A 6 506 506 HOH HOH . D 4 HOH A 7 507 507 HOH HOH . D 4 HOH A 8 508 508 HOH HOH . D 4 HOH A 9 509 509 HOH HOH . D 4 HOH A 10 510 510 HOH HOH . D 4 HOH A 11 511 511 HOH HOH . D 4 HOH A 12 512 512 HOH HOH . D 4 HOH A 13 513 513 HOH HOH . D 4 HOH A 14 514 514 HOH HOH . D 4 HOH A 15 515 515 HOH HOH . D 4 HOH A 16 516 516 HOH HOH . D 4 HOH A 17 517 517 HOH HOH . D 4 HOH A 18 518 518 HOH HOH . D 4 HOH A 19 519 519 HOH HOH . D 4 HOH A 20 520 520 HOH HOH . D 4 HOH A 21 521 521 HOH HOH . D 4 HOH A 22 522 522 HOH HOH . D 4 HOH A 23 523 523 HOH HOH . D 4 HOH A 24 524 524 HOH HOH . D 4 HOH A 25 525 525 HOH HOH . D 4 HOH A 26 526 526 HOH HOH . D 4 HOH A 27 527 527 HOH HOH . D 4 HOH A 28 528 528 HOH HOH . D 4 HOH A 29 529 529 HOH HOH . D 4 HOH A 30 530 530 HOH HOH . D 4 HOH A 31 531 531 HOH HOH . D 4 HOH A 32 532 532 HOH HOH . D 4 HOH A 33 533 533 HOH HOH . D 4 HOH A 34 534 534 HOH HOH . D 4 HOH A 35 535 535 HOH HOH . D 4 HOH A 36 536 536 HOH HOH . D 4 HOH A 37 537 537 HOH HOH . D 4 HOH A 38 538 538 HOH HOH . D 4 HOH A 39 539 539 HOH HOH . D 4 HOH A 40 540 540 HOH HOH . D 4 HOH A 41 541 541 HOH HOH . D 4 HOH A 42 542 542 HOH HOH . D 4 HOH A 43 543 543 HOH HOH . D 4 HOH A 44 544 544 HOH HOH . D 4 HOH A 45 545 545 HOH HOH . D 4 HOH A 46 546 546 HOH HOH . D 4 HOH A 47 547 547 HOH HOH . D 4 HOH A 48 548 548 HOH HOH . D 4 HOH A 49 549 549 HOH HOH . D 4 HOH A 50 550 550 HOH HOH . D 4 HOH A 51 551 551 HOH HOH . D 4 HOH A 52 552 552 HOH HOH . D 4 HOH A 53 553 553 HOH HOH . D 4 HOH A 54 554 554 HOH HOH . D 4 HOH A 55 555 555 HOH HOH . D 4 HOH A 56 556 556 HOH HOH . D 4 HOH A 57 557 557 HOH HOH . D 4 HOH A 58 558 558 HOH HOH . D 4 HOH A 59 559 559 HOH HOH . D 4 HOH A 60 560 560 HOH HOH . D 4 HOH A 61 561 561 HOH HOH . D 4 HOH A 62 562 562 HOH HOH . D 4 HOH A 63 563 563 HOH HOH . D 4 HOH A 64 564 564 HOH HOH . D 4 HOH A 65 565 565 HOH HOH . D 4 HOH A 66 566 566 HOH HOH . D 4 HOH A 67 567 567 HOH HOH . D 4 HOH A 68 568 568 HOH HOH . D 4 HOH A 69 569 569 HOH HOH . D 4 HOH A 70 570 570 HOH HOH . D 4 HOH A 71 571 571 HOH HOH . D 4 HOH A 72 572 572 HOH HOH . D 4 HOH A 73 573 573 HOH HOH . D 4 HOH A 74 574 574 HOH HOH . D 4 HOH A 75 575 575 HOH HOH . D 4 HOH A 76 576 576 HOH HOH . D 4 HOH A 77 577 577 HOH HOH . D 4 HOH A 78 578 578 HOH HOH . D 4 HOH A 79 579 579 HOH HOH . D 4 HOH A 80 580 580 HOH HOH . D 4 HOH A 81 581 581 HOH HOH . D 4 HOH A 82 582 582 HOH HOH . D 4 HOH A 83 583 583 HOH HOH . D 4 HOH A 84 584 584 HOH HOH . D 4 HOH A 85 585 585 HOH HOH . D 4 HOH A 86 586 586 HOH HOH . D 4 HOH A 87 587 587 HOH HOH . D 4 HOH A 88 588 588 HOH HOH . D 4 HOH A 89 589 589 HOH HOH . D 4 HOH A 90 590 590 HOH HOH . D 4 HOH A 91 591 591 HOH HOH . D 4 HOH A 92 592 592 HOH HOH . D 4 HOH A 93 593 593 HOH HOH . D 4 HOH A 94 594 594 HOH HOH . D 4 HOH A 95 595 595 HOH HOH . D 4 HOH A 96 596 596 HOH HOH . D 4 HOH A 97 597 597 HOH HOH . D 4 HOH A 98 598 598 HOH HOH . D 4 HOH A 99 599 599 HOH HOH . D 4 HOH A 100 600 600 HOH HOH . D 4 HOH A 101 601 601 HOH HOH . D 4 HOH A 102 602 602 HOH HOH . D 4 HOH A 103 603 603 HOH HOH . D 4 HOH A 104 604 604 HOH HOH . D 4 HOH A 105 605 605 HOH HOH . D 4 HOH A 106 606 606 HOH HOH . D 4 HOH A 107 607 607 HOH HOH . D 4 HOH A 108 608 608 HOH HOH . D 4 HOH A 109 609 609 HOH HOH . D 4 HOH A 110 610 610 HOH HOH . D 4 HOH A 111 611 611 HOH HOH . D 4 HOH A 112 612 612 HOH HOH . D 4 HOH A 113 613 613 HOH HOH . D 4 HOH A 114 614 614 HOH HOH . D 4 HOH A 115 615 615 HOH HOH . D 4 HOH A 116 616 616 HOH HOH . D 4 HOH A 117 617 617 HOH HOH . D 4 HOH A 118 618 618 HOH HOH . D 4 HOH A 119 619 619 HOH HOH . D 4 HOH A 120 620 620 HOH HOH . D 4 HOH A 121 621 621 HOH HOH . D 4 HOH A 122 622 622 HOH HOH . D 4 HOH A 123 623 623 HOH HOH . D 4 HOH A 124 624 624 HOH HOH . D 4 HOH A 125 625 625 HOH HOH . D 4 HOH A 126 626 626 HOH HOH . D 4 HOH A 127 627 627 HOH HOH . D 4 HOH A 128 628 628 HOH HOH . D 4 HOH A 129 629 629 HOH HOH . D 4 HOH A 130 630 630 HOH HOH . D 4 HOH A 131 631 631 HOH HOH . D 4 HOH A 132 632 632 HOH HOH . D 4 HOH A 133 633 633 HOH HOH . D 4 HOH A 134 634 634 HOH HOH . D 4 HOH A 135 635 635 HOH HOH . D 4 HOH A 136 636 636 HOH HOH . D 4 HOH A 137 637 637 HOH HOH . D 4 HOH A 138 638 638 HOH HOH . E 4 HOH B 1 201 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O10 QCT . . . C 3 9.634 2.845 30.908 1 40.26 ? O10 QCT 401 A 1 HETATM 2 C C23 QCT . . . C 3 8.948 2.695 32.14 1 34.19 ? C23 QCT 401 A 1 HETATM 3 C C22 QCT . . . C 3 9.812 2.006 33.187 1 35.54 ? C22 QCT 401 A 1 HETATM 4 O O9 QCT . . . C 3 11.075 2.637 33.187 1 39.23 ? O9 QCT 401 A 1 HETATM 5 C C24 QCT . . . C 3 8.518 4.081 32.597 1 36.97 ? C24 QCT 401 A 1 HETATM 6 O O11 QCT . . . C 3 7.589 4.617 31.693 1 44.18 ? O11 QCT 401 A 1 HETATM 7 C C25 QCT . . . C 3 7.79 3.985 33.932 1 32.4 ? C25 QCT 401 A 1 HETATM 8 C C26 QCT . . . C 3 7.378 5.325 34.497 1 49.46 ? C26 QCT 401 A 1 HETATM 9 O O8 QCT . . . C 3 8.678 3.397 34.868 1 30.87 ? O8 QCT 401 A 1 HETATM 10 C C21 QCT . . . C 3 9.17 2.136 34.577 1 29.77 ? C21 QCT 401 A 1 HETATM 11 O O7 QCT . . . C 3 8.202 1.1 34.684 1 29.96 ? O7 QCT 401 A 1 HETATM 12 C C3 QCT . . . C 3 7.404 1.092 35.785 1 29.04 ? C3 QCT 401 A 1 HETATM 13 C C4 QCT . . . C 3 8.01 0.873 37.088 1 27.46 ? C4 QCT 401 A 1 HETATM 14 O O2 QCT . . . C 3 9.251 0.817 37.263 1 29.05 ? O2 QCT 401 A 1 HETATM 15 C C2 QCT . . . C 3 6.06 1.113 35.642 1 24.08 ? C2 QCT 401 A 1 HETATM 16 C C11 QCT . . . C 3 5.307 1.153 34.37 1 27.41 ? C11 QCT 401 A 1 HETATM 17 C C12 QCT . . . C 3 5.866 0.773 33.128 1 27.18 ? C12 QCT 401 A 1 HETATM 18 C C13 QCT . . . C 3 5.129 0.828 31.957 1 32.3 ? C13 QCT 401 A 1 HETATM 19 O O5 QCT . . . C 3 5.579 0.487 30.723 1 31.07 ? O5 QCT 401 A 1 HETATM 20 C C14 QCT . . . C 3 3.8 1.229 31.985 1 38.69 ? C14 QCT 401 A 1 HETATM 21 O O6 QCT . . . C 3 3.082 1.266 30.853 1 39.15 ? O6 QCT 401 A 1 HETATM 22 C C15 QCT . . . C 3 3.231 1.601 33.197 1 37 ? C15 QCT 401 A 1 HETATM 23 C C16 QCT . . . C 3 3.975 1.565 34.373 1 27.85 ? C16 QCT 401 A 1 HETATM 24 O O1 QCT . . . C 3 5.244 1.042 36.716 1 25.52 ? O1 QCT 401 A 1 HETATM 25 C C9 QCT . . . C 3 5.699 0.823 37.967 1 24.89 ? C9 QCT 401 A 1 HETATM 26 C C8 QCT . . . C 3 4.764 0.707 38.984 1 22.07 ? C8 QCT 401 A 1 HETATM 27 C C7 QCT . . . C 3 5.256 0.482 40.268 1 24.34 ? C7 QCT 401 A 1 HETATM 28 O O4 QCT . . . C 3 4.352 0.374 41.227 1 26.43 ? O4 QCT 401 A 1 HETATM 29 C C6 QCT . . . C 3 6.633 0.382 40.538 1 25.36 ? C6 QCT 401 A 1 HETATM 30 C C5 QCT . . . C 3 7.539 0.51 39.5 1 26.97 ? C5 QCT 401 A 1 HETATM 31 C C10 QCT . . . C 3 7.076 0.732 38.184 1 21.86 ? C10 QCT 401 A 1 HETATM 32 O O3 QCT . . . C 3 8.854 0.406 39.725 1 28.37 ? O3 QCT 401 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #