data_8ERA
#
_model_server_result.job_id            5BHON7Y69avvCpbz0z-Qxg 
_model_server_result.datetime_utc      '2025-01-14 01:41:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8era 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2601}' 
#
_entry.id    8ERA 
#
_exptl.entry_id    8ERA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              484.51 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[6-{[(3M)-4-amino-3-(2-amino-1,3-benzoxazol-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]methyl}-3,4-dihydroisoquinolin-2(1H)-yl]-3-hydroxypropan-1-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               'Entity 5 XZ9 and Entity 6 XYU are connected by an unmodeled PEG linker.' 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ERA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ERA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H24 N8 O3' 
_chem_comp.formula_weight    484.51 
_chem_comp.id                XZ9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[6-{[(3M)-4-amino-3-(2-amino-1,3-benzoxazol-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]methyl}-3,4-dihydroisoquinolin-2(1H)-yl]-3-hydroxypropan-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 N7 XZ9 doub 523 n y 
C22 N6 XZ9 sing 524 n y 
N7 C23 XZ9 sing 525 n y 
N6 C21 XZ9 doub 526 n y 
C11 C10 XZ9 sing 527 n n 
C11 N2 XZ9 sing 528 n n 
C23 N2 XZ9 sing 529 n y 
C23 C20 XZ9 doub 530 n y 
C10 C24 XZ9 doub 531 n y 
C10 C9 XZ9 sing 532 n y 
N2 N3 XZ9 sing 533 n y 
C24 C6 XZ9 sing 534 n y 
C21 C20 XZ9 sing 535 n y 
C21 N8 XZ9 sing 536 n n 
C9 C8 XZ9 doub 537 n y 
C20 C12 XZ9 sing 538 n y 
C6 C5 XZ9 sing 539 n n 
C6 C7 XZ9 doub 540 n y 
C5 C4 XZ9 sing 541 n n 
C8 C7 XZ9 sing 542 n y 
C4 N1 XZ9 sing 543 n n 
C7 C25 XZ9 sing 544 n n 
N3 C12 XZ9 doub 545 n y 
C12 C13 XZ9 sing 546 n n 
C25 N1 XZ9 sing 547 n n 
N1 C3 XZ9 sing 548 n n 
C13 C18 XZ9 doub 549 n y 
C13 C14 XZ9 sing 550 n y 
C18 C17 XZ9 sing 551 n y 
C3 C2 XZ9 sing 552 n n 
C3 O3 XZ9 doub 553 n n 
C2 C1 XZ9 sing 554 n n 
C1 O1 XZ9 sing 555 n n 
C14 C15 XZ9 doub 556 n y 
C17 C16 XZ9 doub 557 n y 
C15 C16 XZ9 sing 558 n y 
C15 N5 XZ9 sing 559 n y 
C16 O2 XZ9 sing 560 n y 
N5 C19 XZ9 doub 561 n y 
O2 C19 XZ9 sing 562 n y 
C19 N4 XZ9 sing 563 n n 
C1 H1 XZ9 sing 564 n n 
C1 H2 XZ9 sing 565 n n 
C11 H3 XZ9 sing 566 n n 
C11 H4 XZ9 sing 567 n n 
C14 H5 XZ9 sing 568 n n 
C17 H6 XZ9 sing 569 n n 
C18 H7 XZ9 sing 570 n n 
C2 H8 XZ9 sing 571 n n 
C2 H9 XZ9 sing 572 n n 
C22 H10 XZ9 sing 573 n n 
C24 H11 XZ9 sing 574 n n 
C25 H12 XZ9 sing 575 n n 
C25 H13 XZ9 sing 576 n n 
C4 H14 XZ9 sing 577 n n 
C4 H15 XZ9 sing 578 n n 
C5 H16 XZ9 sing 579 n n 
C5 H17 XZ9 sing 580 n n 
C8 H18 XZ9 sing 581 n n 
C9 H19 XZ9 sing 582 n n 
N4 H20 XZ9 sing 583 n n 
N4 H21 XZ9 sing 584 n n 
N8 H22 XZ9 sing 585 n n 
N8 H23 XZ9 sing 586 n n 
O1 H24 XZ9 sing 587 n n 
#
_atom_sites.entry_id                     8ERA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 XZ9 A 1 2601 2601 XZ9 RMC . 
F 6 XYU B 1 201 201 XYU RML . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 XZ9 . . . E 5 195.185 215.052 221.883 1 115.64 ? C1 XZ9 2601 A 1 
HETATM 2 C C10 XZ9 . . . E 5 193.466 209.228 218.099 1 111.02 ? C10 XZ9 2601 A 1 
HETATM 3 C C11 XZ9 . . . E 5 192.323 208.536 217.399 1 108.1 ? C11 XZ9 2601 A 1 
HETATM 4 C C12 XZ9 . . . E 5 191.051 206.316 219.867 1 106.17 ? C12 XZ9 2601 A 1 
HETATM 5 C C13 XZ9 . . . E 5 190.657 206.122 221.271 1 103.77 ? C13 XZ9 2601 A 1 
HETATM 6 C C14 XZ9 . . . E 5 191.353 206.771 222.286 1 104.85 ? C14 XZ9 2601 A 1 
HETATM 7 C C15 XZ9 . . . E 5 190.952 206.563 223.602 1 104.93 ? C15 XZ9 2601 A 1 
HETATM 8 C C16 XZ9 . . . E 5 189.89 205.73 223.86 1 103.3 ? C16 XZ9 2601 A 1 
HETATM 9 C C17 XZ9 . . . E 5 189.187 205.078 222.878 1 105.48 ? C17 XZ9 2601 A 1 
HETATM 10 C C18 XZ9 . . . E 5 189.585 205.286 221.574 1 106.26 ? C18 XZ9 2601 A 1 
HETATM 11 C C19 XZ9 . . . E 5 190.67 206.522 225.729 1 105.81 ? C19 XZ9 2601 A 1 
HETATM 12 C C2 XZ9 . . . E 5 196.624 214.587 221.868 1 117.74 ? C2 XZ9 2601 A 1 
HETATM 13 C C20 XZ9 . . . E 5 191.024 205.425 218.793 1 107.2 ? C20 XZ9 2601 A 1 
HETATM 14 C C21 XZ9 . . . E 5 190.661 204.08 218.545 1 108.68 ? C21 XZ9 2601 A 1 
HETATM 15 C C22 XZ9 . . . E 5 191.279 204.404 216.348 1 110.05 ? C22 XZ9 2601 A 1 
HETATM 16 C C23 XZ9 . . . E 5 191.511 206.153 217.692 1 105.87 ? C23 XZ9 2601 A 1 
HETATM 17 C C24 XZ9 . . . E 5 193.454 210.606 218.286 1 112.25 ? C24 XZ9 2601 A 1 
HETATM 18 C C25 XZ9 . . . E 5 196.745 211.195 220.094 1 115.23 ? C25 XZ9 2601 A 1 
HETATM 19 C C3 XZ9 . . . E 5 196.784 213.108 221.653 1 121.56 ? C3 XZ9 2601 A 1 
HETATM 20 C C4 XZ9 . . . E 5 195.807 213.349 219.373 1 112.57 ? C4 XZ9 2601 A 1 
HETATM 21 C C5 XZ9 . . . E 5 194.436 212.762 219.108 1 111.4 ? C5 XZ9 2601 A 1 
HETATM 22 C C6 XZ9 . . . E 5 194.5 211.271 218.928 1 112.2 ? C6 XZ9 2601 A 1 
HETATM 23 C C7 XZ9 . . . E 5 195.584 210.538 219.394 1 112.31 ? C7 XZ9 2601 A 1 
HETATM 24 C C8 XZ9 . . . E 5 195.605 209.157 219.206 1 114.74 ? C8 XZ9 2601 A 1 
HETATM 25 C C9 XZ9 . . . E 5 194.561 208.511 218.568 1 115.97 ? C9 XZ9 2601 A 1 
HETATM 26 N N1 XZ9 . . . E 5 196.462 212.594 220.439 1 119.61 ? N1 XZ9 2601 A 1 
HETATM 27 N N2 XZ9 . . . E 5 191.797 207.406 218.151 1 102.69 ? N2 XZ9 2601 A 1 
HETATM 28 N N3 XZ9 . . . E 5 191.513 207.508 219.487 1 103.72 ? N3 XZ9 2601 A 1 
HETATM 29 N N4 XZ9 . . . E 5 190.787 206.728 227.034 1 110.2 ? N4 XZ9 2601 A 1 
HETATM 30 N N5 XZ9 . . . E 5 191.43 207.053 224.811 1 108.12 ? N5 XZ9 2601 A 1 
HETATM 31 N N6 XZ9 . . . E 5 190.8 203.589 217.298 1 107.41 ? N6 XZ9 2601 A 1 
HETATM 32 N N7 XZ9 . . . E 5 191.654 205.676 216.446 1 110.1 ? N7 XZ9 2601 A 1 
HETATM 33 N N8 XZ9 . . . E 5 190.183 203.265 219.492 1 111.39 ? N8 XZ9 2601 A 1 
HETATM 34 O O1 XZ9 . . . E 5 194.918 215.889 222.999 1 116.39 ? O1 XZ9 2601 A 1 
HETATM 35 O O2 XZ9 . . . E 5 189.701 205.697 225.234 1 105.42 ? O2 XZ9 2601 A 1 
HETATM 36 O O3 XZ9 . . . E 5 197.195 212.392 222.558 1 122.58 ? O3 XZ9 2601 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           45 
_model_server_stats.create_model_time_ms    89 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           36 
#