data_8ES9 # _model_server_result.job_id qdDn1rMN3tUfih8wthlpeg _model_server_result.datetime_utc '2024-11-14 14:12:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8es9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1702}' # _entry.id 8ES9 # _exptl.entry_id 8ES9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ES9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ES9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 10 oligosaccharide 11 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 10 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 10 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 11 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 10 n L NAG 1 H 1 NAG H 1701 NAG 10 n L NAG 2 H 2 NAG H 1702 NAG 10 n L BMA 3 H 3 BMA H 1703 BMA 11 n M NAG 1 L 1 NAG L 1701 NAG 11 n M NAG 2 L 2 NAG L 1702 NAG 11 n N NAG 1 T 1 NAG T 1701 NAG 11 n N NAG 2 T 2 NAG T 1702 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 23 1_555 A SG CYS 108 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 156 A CYS 136 1_555 A SG CYS 206 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 228 A CYS 208 1_555 B SG CYS 265 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 42 B CYS 23 1_555 B SG CYS 113 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 165 B CYS 146 1_555 B SG CYS 230 B CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 C SG CYS 32 Z CYS 32 1_555 D SG CYS 32 Y CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 E SG CYS 37 D CYS 37 1_555 E SG CYS 73 D CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 E SG CYS 93 D CYS 93 1_555 E SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 F SG CYS 50 F CYS 49 1_555 F SG CYS 99 F CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 F SG CYS 120 F CYS 119 1_555 F SG CYS 123 F CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 G SG CYS 46 G CYS 46 1_555 G SG CYS 87 G CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 G SG CYS 104 G CYS 104 1_555 G SG CYS 107 G CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 H SG CYS 50 E CYS 49 1_555 H SG CYS 99 E CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 H SG CYS 120 E CYS 119 1_555 H SG CYS 123 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 I SG CYS 102 N CYS 101 1_555 I SG CYS 165 N CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 I SG CYS 204 N CYS 203 1_555 I SG CYS 260 N CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf17 J SG CYS 26 M CYS 25 1_555 J SG CYS 81 M CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 42 A ASN 22 1_555 Q C1 NAG . A NAG 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 166 A ASN 146 1_555 N C1 NAG . T NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 A ND2 ASN 200 A ASN 180 1_555 P C1 NAG . A NAG 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 A ND2 ASN 211 A ASN 191 1_555 O C1 NAG . A NAG 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 B ND2 ASN 204 B ASN 185 1_555 R C1 NAG . B NAG 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale6 E ND2 ASN 38 D ASN 38 1_555 L C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 E ND2 ASN 74 D ASN 74 1_555 M C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 G ND2 ASN 52 G ASN 52 1_555 T C1 NAG . G NAG 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale9 G ND2 ASN 92 G ASN 92 1_555 U C1 NAG . G NAG 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale10 L O4 NAG . H NAG 1 1_555 L C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 L O4 NAG . H NAG 2 1_555 L C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale12 M O4 NAG . L NAG 1 1_555 M C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 N O4 NAG . T NAG 1 1_555 N C1 NAG . T NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 428 n n CBA CAB Y01 sing 429 n n CBA CAN Y01 sing 430 n n CAN CAJ Y01 sing 431 n n CAJ CAO Y01 sing 432 n n CAO CBB Y01 sing 433 n n CBB CAC Y01 sing 434 n n CBB CBE Y01 sing 435 n n CBE CAP Y01 sing 436 n n CBE CBI Y01 sing 437 n n CAP CAQ Y01 sing 438 n n CAQ CBG Y01 sing 439 n n CBG CBI Y01 sing 440 n n CBG CBD Y01 sing 441 n n CBI CAE Y01 sing 442 n n CBI CAU Y01 sing 443 n n CAU CAS Y01 sing 444 n n CAS CBF Y01 sing 445 n n CBF CBD Y01 sing 446 n n CBF CBH Y01 sing 447 n n CBD CAK Y01 sing 448 n n CAK CAI Y01 sing 449 n n CAI CAZ Y01 doub 450 n n CAZ CAV Y01 sing 451 n n CAZ CBH Y01 sing 452 n n CAV CBC Y01 sing 453 n n CBH CAD Y01 sing 454 n n CBH CAT Y01 sing 455 n n CAT CAR Y01 sing 456 n n CAR CBC Y01 sing 457 n n CBC OAW Y01 sing 458 n n OAW CAY Y01 sing 459 n n CAY OAG Y01 doub 460 n n CAY CAM Y01 sing 461 n n CAM CAL Y01 sing 462 n n CAL CAX Y01 sing 463 n n CAX OAH Y01 sing 464 n n CAX OAF Y01 doub 465 n n CAA HAA1 Y01 sing 466 n n CAA HAA2 Y01 sing 467 n n CAA HAA3 Y01 sing 468 n n CBA HBA Y01 sing 469 n n CAB HAB1 Y01 sing 470 n n CAB HAB2 Y01 sing 471 n n CAB HAB3 Y01 sing 472 n n CAN HAN1 Y01 sing 473 n n CAN HAN2 Y01 sing 474 n n CAJ HAJ1 Y01 sing 475 n n CAJ HAJ2 Y01 sing 476 n n CAO HAO1 Y01 sing 477 n n CAO HAO2 Y01 sing 478 n n CBB HBB Y01 sing 479 n n CAC HAC1 Y01 sing 480 n n CAC HAC2 Y01 sing 481 n n CAC HAC3 Y01 sing 482 n n CBE HBE Y01 sing 483 n n CAP HAP1 Y01 sing 484 n n CAP HAP2 Y01 sing 485 n n CAQ HAQ1 Y01 sing 486 n n CAQ HAQ2 Y01 sing 487 n n CBG HBG Y01 sing 488 n n CBD HBD Y01 sing 489 n n CAE HAE1 Y01 sing 490 n n CAE HAE2 Y01 sing 491 n n CAE HAE3 Y01 sing 492 n n CAU HAU1 Y01 sing 493 n n CAU HAU2 Y01 sing 494 n n CAS HAS1 Y01 sing 495 n n CAS HAS2 Y01 sing 496 n n CBF HBF Y01 sing 497 n n CAK HAK1 Y01 sing 498 n n CAK HAK2 Y01 sing 499 n n CAI HAI Y01 sing 500 n n CAV HAV1 Y01 sing 501 n n CAV HAV2 Y01 sing 502 n n CBC HBC Y01 sing 503 n n CAD HAD1 Y01 sing 504 n n CAD HAD2 Y01 sing 505 n n CAD HAD3 Y01 sing 506 n n CAT HAT1 Y01 sing 507 n n CAT HAT2 Y01 sing 508 n n CAR HAR1 Y01 sing 509 n n CAR HAR2 Y01 sing 510 n n CAM HAM1 Y01 sing 511 n n CAM HAM2 Y01 sing 512 n n CAL HAL1 Y01 sing 513 n n CAL HAL2 Y01 sing 514 n n OAH HAH Y01 sing 515 n n # _atom_sites.entry_id 8ES9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 12 NAG A 1 1701 1701 NAG NAG . P 12 NAG A 1 1702 1705 NAG NAG . Q 12 NAG A 1 1703 1701 NAG NAG . R 12 NAG B 1 1701 1701 NAG NAG . S 13 Y01 B 1 1702 101 Y01 Y01 . T 12 NAG G 1 1701 1701 NAG NAG . U 12 NAG G 1 1702 1701 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . S 13 190.141 175.265 225.202 1 122.09 ? CAA Y01 1702 B 1 HETATM 2 C CBA Y01 . . . S 13 190.894 175.325 223.883 1 122.09 ? CBA Y01 1702 B 1 HETATM 3 C CAB Y01 . . . S 13 190.523 176.582 223.107 1 122.09 ? CAB Y01 1702 B 1 HETATM 4 C CAN Y01 . . . S 13 190.696 174.088 223.002 1 122.09 ? CAN Y01 1702 B 1 HETATM 5 C CAJ Y01 . . . S 13 189.283 173.511 222.964 1 122.09 ? CAJ Y01 1702 B 1 HETATM 6 C CAO Y01 . . . S 13 189.3 171.987 223.008 1 122.09 ? CAO Y01 1702 B 1 HETATM 7 C CBB Y01 . . . S 13 190.169 171.358 221.893 1 122.09 ? CBB Y01 1702 B 1 HETATM 8 C CAC Y01 . . . S 13 190.693 170.023 222.409 1 122.09 ? CAC Y01 1702 B 1 HETATM 9 C CBE Y01 . . . S 13 189.281 171.313 220.593 1 122.09 ? CBE Y01 1702 B 1 HETATM 10 C CAP Y01 . . . S 13 189.572 172.582 219.724 1 122.09 ? CAP Y01 1702 B 1 HETATM 11 C CAQ Y01 . . . S 13 189.367 172.169 218.263 1 122.09 ? CAQ Y01 1702 B 1 HETATM 12 C CBG Y01 . . . S 13 188.58 170.883 218.424 1 122.09 ? CBG Y01 1702 B 1 HETATM 13 C CBI Y01 . . . S 13 189.36 170.177 219.508 1 122.09 ? CBI Y01 1702 B 1 HETATM 14 C CAE Y01 . . . S 13 190.768 169.838 218.998 1 122.09 ? CAE Y01 1702 B 1 HETATM 15 C CAU Y01 . . . S 13 188.551 168.918 219.842 1 122.09 ? CAU Y01 1702 B 1 HETATM 16 C CAS Y01 . . . S 13 188.244 168.029 218.621 1 122.09 ? CAS Y01 1702 B 1 HETATM 17 C CBF Y01 . . . S 13 187.633 168.761 217.409 1 122.09 ? CBF Y01 1702 B 1 HETATM 18 C CBD Y01 . . . S 13 188.412 170.048 217.168 1 122.09 ? CBD Y01 1702 B 1 HETATM 19 C CAK Y01 . . . S 13 187.694 170.877 216.128 1 122.09 ? CAK Y01 1702 B 1 HETATM 20 C CAI Y01 . . . S 13 187.299 170.143 214.997 1 122.09 ? CAI Y01 1702 B 1 HETATM 21 C CAZ Y01 . . . S 13 187.274 168.764 214.917 1 122.09 ? CAZ Y01 1702 B 1 HETATM 22 C CAV Y01 . . . S 13 186.84 168.277 213.605 1 122.09 ? CAV Y01 1702 B 1 HETATM 23 C CBH Y01 . . . S 13 187.642 167.937 216.097 1 122.09 ? CBH Y01 1702 B 1 HETATM 24 C CAD Y01 . . . S 13 189.001 167.32 215.853 1 122.09 ? CAD Y01 1702 B 1 HETATM 25 C CAT Y01 . . . S 13 186.599 166.798 216.157 1 122.09 ? CAT Y01 1702 B 1 HETATM 26 C CAR Y01 . . . S 13 186.368 166.079 214.813 1 122.09 ? CAR Y01 1702 B 1 HETATM 27 C CBC Y01 . . . S 13 185.916 167.075 213.73 1 122.09 ? CBC Y01 1702 B 1 HETATM 28 O OAW Y01 . . . S 13 185.856 166.57 212.382 1 122.09 ? OAW Y01 1702 B 1 HETATM 29 C CAY Y01 . . . S 13 186.7 165.544 212.028 1 122.09 ? CAY Y01 1702 B 1 HETATM 30 O OAG Y01 . . . S 13 187.909 165.854 212.123 1 122.09 ? OAG Y01 1702 B 1 HETATM 31 C CAM Y01 . . . S 13 186.202 164.241 211.564 1 122.09 ? CAM Y01 1702 B 1 HETATM 32 C CAL Y01 . . . S 13 185.26 164.352 210.382 1 122.09 ? CAL Y01 1702 B 1 HETATM 33 C CAX Y01 . . . S 13 185.757 163.491 209.197 1 122.09 ? CAX Y01 1702 B 1 HETATM 34 O OAH Y01 . . . S 13 184.883 162.966 208.468 1 122.09 ? OAH Y01 1702 B 1 HETATM 35 O OAF Y01 . . . S 13 186.998 163.396 209.07 1 122.09 ? OAF Y01 1702 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #