data_8ESG # _model_server_result.job_id 62gsQllII9f4GlP4OyCfKA _model_server_result.datetime_utc '2025-07-17 13:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8esg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8ESG # _exptl.entry_id 8ESG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.653 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-1-[(2R)-6-fluoro-5-oxohexan-2-yl]-9a,11a-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-7-yl hydrogen sulfate (non-preferred name)' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8ESG _cell.length_a 157.362 _cell.length_b 157.362 _cell.length_c 140.718 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ESG _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -23.453 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 2 A CYS 2 1_555 C C1 WSR . A WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? covale ? covale2 B SG CYS 2 H CYS 2 1_555 D C1 WSR . H WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? # _chem_comp.formula 'C25 H41 F O5 S' _chem_comp.formula_weight 472.653 _chem_comp.id WSR _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-1-[(2R)-6-fluoro-5-oxohexan-2-yl]-9a,11a-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-7-yl hydrogen sulfate (non-preferred name)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 S1 WSR doub 374 n n C18 C17 WSR sing 375 n n C18 C19 WSR sing 376 n n C17 C16 WSR sing 377 n n C6 C5 WSR sing 378 n n C22 C23 WSR sing 379 n n C22 C21 WSR sing 380 n n C23 C24 WSR sing 381 n n S1 O3 WSR doub 382 n n S1 O4 WSR sing 383 n n S1 O2 WSR sing 384 n n C20 C19 WSR sing 385 n n C19 C21 WSR sing 386 n n C19 C14 WSR sing 387 n n C16 O2 WSR sing 388 n n C16 C15 WSR sing 389 n n C21 C11 WSR sing 390 n n C25 C24 WSR sing 391 n n C5 C7 WSR sing 392 n n C5 C4 WSR sing 393 n n C24 C7 WSR sing 394 n n C24 C10 WSR sing 395 n n C3 C4 WSR sing 396 n n C3 C2 WSR sing 397 n n C7 C8 WSR sing 398 n n C14 C15 WSR sing 399 n n C14 C13 WSR sing 400 n n C11 C10 WSR sing 401 n n C11 C12 WSR sing 402 n n C2 C1 WSR sing 403 n n C2 O1 WSR doub 404 n n C10 C9 WSR sing 405 n n C8 C9 WSR sing 406 n n C13 C12 WSR sing 407 n n C4 H1 WSR sing 408 n n C4 H2 WSR sing 409 n n C5 H3 WSR sing 410 n n C6 H4 WSR sing 411 n n C6 H5 WSR sing 412 n n C6 H6 WSR sing 413 n n C7 H7 WSR sing 414 n n C8 H8 WSR sing 415 n n C8 H9 WSR sing 416 n n C10 H10 WSR sing 417 n n C13 H11 WSR sing 418 n n C13 H12 WSR sing 419 n n C15 H13 WSR sing 420 n n C15 H14 WSR sing 421 n n C17 H15 WSR sing 422 n n C17 H16 WSR sing 423 n n C20 H17 WSR sing 424 n n C20 H18 WSR sing 425 n n C20 H19 WSR sing 426 n n C21 H20 WSR sing 427 n n C22 H21 WSR sing 428 n n C22 H22 WSR sing 429 n n C1 H23 WSR sing 430 n n C1 H24 WSR sing 431 n n C11 H26 WSR sing 432 n n C12 H27 WSR sing 433 n n C12 H28 WSR sing 434 n n C14 H29 WSR sing 435 n n C16 H30 WSR sing 436 n n C18 H31 WSR sing 437 n n C18 H32 WSR sing 438 n n C23 H33 WSR sing 439 n n C23 H34 WSR sing 440 n n C25 H35 WSR sing 441 n n C25 H36 WSR sing 442 n n C25 H37 WSR sing 443 n n C3 H38 WSR sing 444 n n C3 H39 WSR sing 445 n n C9 H40 WSR sing 446 n n C9 H41 WSR sing 447 n n C1 F1 WSR sing 448 n n O4 H25 WSR sing 449 n n # _atom_sites.entry_id 8ESG _atom_sites.fract_transf_matrix[1][1] 0.006355 _atom_sites.fract_transf_matrix[1][2] 0.003669 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WSR A 1 401 401 WSR LIG . D 2 WSR H 1 401 401 WSR LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 WSR . . . C 2 30.208 -39.304 -15.459 1 68.66 ? C4 WSR 401 A 1 HETATM 2 C C5 WSR . . . C 2 28.971 -39.375 -16.368 1 74.46 ? C5 WSR 401 A 1 HETATM 3 C C6 WSR . . . C 2 29.365 -39.918 -17.739 1 75.64 ? C6 WSR 401 A 1 HETATM 4 C C7 WSR . . . C 2 27.878 -40.208 -15.675 1 79.01 ? C7 WSR 401 A 1 HETATM 5 C C8 WSR . . . C 2 27.658 -39.777 -14.199 1 77.48 ? C8 WSR 401 A 1 HETATM 6 C C10 WSR . . . C 2 25.765 -41.005 -15.045 1 77.92 ? C10 WSR 401 A 1 HETATM 7 C C13 WSR . . . C 2 22.312 -42.559 -14.187 1 80.29 ? C13 WSR 401 A 1 HETATM 8 C C15 WSR . . . C 2 22.901 -44.729 -15.328 1 73.55 ? C15 WSR 401 A 1 HETATM 9 C C17 WSR . . . C 2 23.205 -44.843 -17.792 1 73.72 ? C17 WSR 401 A 1 HETATM 10 C C20 WSR . . . C 2 21.683 -41.375 -16.925 1 76.34 ? C20 WSR 401 A 1 HETATM 11 C C21 WSR . . . C 2 24.081 -42.145 -16.501 1 80.85 ? C21 WSR 401 A 1 HETATM 12 C C22 WSR . . . C 2 24.702 -41.423 -17.703 1 79.19 ? C22 WSR 401 A 1 HETATM 13 C C24 WSR . . . C 2 26.423 -40.264 -16.23 1 77.96 ? C24 WSR 401 A 1 HETATM 14 C C1 WSR . . . C 2 32.888 -36.918 -14.961 1 73.26 ? C1 WSR 401 A 1 HETATM 15 C C11 WSR . . . C 2 24.283 -41.337 -15.199 1 77.55 ? C11 WSR 401 A 1 HETATM 16 C C12 WSR . . . C 2 23.76 -42.116 -13.995 1 75.68 ? C12 WSR 401 A 1 HETATM 17 C C14 WSR . . . C 2 22.165 -43.391 -15.455 1 71.87 ? C14 WSR 401 A 1 HETATM 18 C C16 WSR . . . C 2 22.751 -45.596 -16.562 1 79 ? C16 WSR 401 A 1 HETATM 19 C C18 WSR . . . C 2 22.458 -43.52 -17.931 1 73.98 ? C18 WSR 401 A 1 HETATM 20 C C19 WSR . . . C 2 22.605 -42.592 -16.709 1 76.09 ? C19 WSR 401 A 1 HETATM 21 C C2 WSR . . . C 2 32.507 -38.333 -15.101 1 79.95 ? C2 WSR 401 A 1 HETATM 22 C C23 WSR . . . C 2 26.187 -41.107 -17.488 1 76.45 ? C23 WSR 401 A 1 HETATM 23 C C25 WSR . . . C 2 25.866 -38.841 -16.407 1 74.53 ? C25 WSR 401 A 1 HETATM 24 C C3 WSR . . . C 2 31.424 -38.637 -16.084 1 71.15 ? C3 WSR 401 A 1 HETATM 25 C C9 WSR . . . C 2 26.232 -40.227 -13.819 1 75.05 ? C9 WSR 401 A 1 HETATM 26 O O1 WSR . . . C 2 33.022 -39.195 -14.433 1 77.96 ? O1 WSR 401 A 1 HETATM 27 O O2 WSR . . . C 2 23.611 -46.792 -16.413 1 86.88 ? O2 WSR 401 A 1 HETATM 28 O O3 WSR . . . C 2 24.298 -49.071 -16.861 1 88.43 ? O3 WSR 401 A 1 HETATM 29 O O4 WSR . . . C 2 21.96 -48.533 -16.636 1 98.95 ? O4 WSR 401 A 1 HETATM 30 O O5 WSR . . . C 2 23.177 -47.821 -18.591 1 92.56 ? O5 WSR 401 A 1 HETATM 31 S S1 WSR . . . C 2 23.24 -48.138 -17.181 1 100.57 ? S1 WSR 401 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #