data_8ESI # _model_server_result.job_id 5zefCzQOFiODBhAcZzR9Rw _model_server_result.datetime_utc '2025-07-13 06:35:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8esi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 8ESI # _exptl.entry_id 8ESI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.653 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-1-[(2R)-6-fluoro-5-oxohexan-2-yl]-9a,11a-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-7-yl hydrogen sulfate (non-preferred name)' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.6 _cell.angle_gamma 90 _cell.entry_id 8ESI _cell.length_a 93.072 _cell.length_b 166.801 _cell.length_c 103.077 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ESI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,Q,R,S,T 1 1 E,F,G,H,M,N,O,P,U,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 2 A CYS 2 1_555 I C1 WSR . A WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale2 B SG CYS 2 B CYS 2 1_555 J C1 WSR . B WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? covale ? covale3 C SG CYS 2 C CYS 2 1_555 K C1 WSR . C WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale4 D SG CYS 2 D CYS 2 1_555 L C1 WSR . D WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? covale ? covale5 E SG CYS 2 E CYS 2 1_555 M C1 WSR . E WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale6 F SG CYS 2 F CYS 2 1_555 N C1 WSR . F WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? covale ? covale7 G SG CYS 2 G CYS 2 1_555 O C1 WSR . G WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? covale ? covale8 H SG CYS 2 H CYS 2 1_555 P C1 WSR . H WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? # _chem_comp.formula 'C25 H41 F O5 S' _chem_comp.formula_weight 472.653 _chem_comp.id WSR _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-1-[(2R)-6-fluoro-5-oxohexan-2-yl]-9a,11a-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-7-yl hydrogen sulfate (non-preferred name)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 S1 WSR doub 376 n n C18 C17 WSR sing 377 n n C18 C19 WSR sing 378 n n C17 C16 WSR sing 379 n n C6 C5 WSR sing 380 n n C22 C23 WSR sing 381 n n C22 C21 WSR sing 382 n n C23 C24 WSR sing 383 n n S1 O3 WSR doub 384 n n S1 O4 WSR sing 385 n n S1 O2 WSR sing 386 n n C20 C19 WSR sing 387 n n C19 C21 WSR sing 388 n n C19 C14 WSR sing 389 n n C16 O2 WSR sing 390 n n C16 C15 WSR sing 391 n n C21 C11 WSR sing 392 n n C25 C24 WSR sing 393 n n C5 C7 WSR sing 394 n n C5 C4 WSR sing 395 n n C24 C7 WSR sing 396 n n C24 C10 WSR sing 397 n n C3 C4 WSR sing 398 n n C3 C2 WSR sing 399 n n C7 C8 WSR sing 400 n n C14 C15 WSR sing 401 n n C14 C13 WSR sing 402 n n C11 C10 WSR sing 403 n n C11 C12 WSR sing 404 n n C2 C1 WSR sing 405 n n C2 O1 WSR doub 406 n n C10 C9 WSR sing 407 n n C8 C9 WSR sing 408 n n C13 C12 WSR sing 409 n n C4 H1 WSR sing 410 n n C4 H2 WSR sing 411 n n C5 H3 WSR sing 412 n n C6 H4 WSR sing 413 n n C6 H5 WSR sing 414 n n C6 H6 WSR sing 415 n n C7 H7 WSR sing 416 n n C8 H8 WSR sing 417 n n C8 H9 WSR sing 418 n n C10 H10 WSR sing 419 n n C13 H11 WSR sing 420 n n C13 H12 WSR sing 421 n n C15 H13 WSR sing 422 n n C15 H14 WSR sing 423 n n C17 H15 WSR sing 424 n n C17 H16 WSR sing 425 n n C20 H17 WSR sing 426 n n C20 H18 WSR sing 427 n n C20 H19 WSR sing 428 n n C21 H20 WSR sing 429 n n C22 H21 WSR sing 430 n n C22 H22 WSR sing 431 n n C1 H23 WSR sing 432 n n C1 H24 WSR sing 433 n n C11 H26 WSR sing 434 n n C12 H27 WSR sing 435 n n C12 H28 WSR sing 436 n n C14 H29 WSR sing 437 n n C16 H30 WSR sing 438 n n C18 H31 WSR sing 439 n n C18 H32 WSR sing 440 n n C23 H33 WSR sing 441 n n C23 H34 WSR sing 442 n n C25 H35 WSR sing 443 n n C25 H36 WSR sing 444 n n C25 H37 WSR sing 445 n n C3 H38 WSR sing 446 n n C3 H39 WSR sing 447 n n C9 H40 WSR sing 448 n n C9 H41 WSR sing 449 n n C1 F1 WSR sing 450 n n O4 H25 WSR sing 451 n n # _atom_sites.entry_id 8ESI _atom_sites.fract_transf_matrix[1][1] 0.010744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00538 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 WSR A 1 401 401 WSR LIG . J 2 WSR B 1 401 401 WSR LIG . K 2 WSR C 1 401 401 WSR LIG . L 2 WSR D 1 401 401 WSR LIG . M 2 WSR E 1 401 401 WSR LIG . N 2 WSR F 1 401 401 WSR LIG . O 2 WSR G 1 401 401 WSR LIG . P 2 WSR H 1 401 401 WSR LIG . Q 3 HOH A 1 501 72 HOH HOH . Q 3 HOH A 2 502 188 HOH HOH . Q 3 HOH A 3 503 56 HOH HOH . Q 3 HOH A 4 504 194 HOH HOH . Q 3 HOH A 5 505 36 HOH HOH . Q 3 HOH A 6 506 10 HOH HOH . Q 3 HOH A 7 507 67 HOH HOH . Q 3 HOH A 8 508 16 HOH HOH . Q 3 HOH A 9 509 280 HOH HOH . Q 3 HOH A 10 510 32 HOH HOH . Q 3 HOH A 11 511 88 HOH HOH . Q 3 HOH A 12 512 184 HOH HOH . Q 3 HOH A 13 513 231 HOH HOH . Q 3 HOH A 14 514 282 HOH HOH . Q 3 HOH A 15 515 264 HOH HOH . Q 3 HOH A 16 516 78 HOH HOH . Q 3 HOH A 17 517 161 HOH HOH . Q 3 HOH A 18 518 195 HOH HOH . Q 3 HOH A 19 519 190 HOH HOH . Q 3 HOH A 20 520 135 HOH HOH . Q 3 HOH A 21 521 208 HOH HOH . Q 3 HOH A 22 522 256 HOH HOH . Q 3 HOH A 23 523 165 HOH HOH . R 3 HOH B 1 501 254 HOH HOH . R 3 HOH B 2 502 226 HOH HOH . R 3 HOH B 3 503 51 HOH HOH . R 3 HOH B 4 504 93 HOH HOH . R 3 HOH B 5 505 80 HOH HOH . R 3 HOH B 6 506 30 HOH HOH . R 3 HOH B 7 507 6 HOH HOH . R 3 HOH B 8 508 271 HOH HOH . R 3 HOH B 9 509 2 HOH HOH . R 3 HOH B 10 510 44 HOH HOH . R 3 HOH B 11 511 117 HOH HOH . R 3 HOH B 12 512 47 HOH HOH . R 3 HOH B 13 513 242 HOH HOH . R 3 HOH B 14 514 105 HOH HOH . R 3 HOH B 15 515 145 HOH HOH . R 3 HOH B 16 516 166 HOH HOH . R 3 HOH B 17 517 82 HOH HOH . R 3 HOH B 18 518 43 HOH HOH . R 3 HOH B 19 519 164 HOH HOH . R 3 HOH B 20 520 114 HOH HOH . R 3 HOH B 21 521 215 HOH HOH . R 3 HOH B 22 522 38 HOH HOH . R 3 HOH B 23 523 108 HOH HOH . R 3 HOH B 24 524 76 HOH HOH . R 3 HOH B 25 525 170 HOH HOH . R 3 HOH B 26 526 176 HOH HOH . R 3 HOH B 27 527 263 HOH HOH . S 3 HOH C 1 501 102 HOH HOH . S 3 HOH C 2 502 50 HOH HOH . S 3 HOH C 3 503 103 HOH HOH . S 3 HOH C 4 504 3 HOH HOH . S 3 HOH C 5 505 71 HOH HOH . S 3 HOH C 6 506 149 HOH HOH . S 3 HOH C 7 507 26 HOH HOH . S 3 HOH C 8 508 203 HOH HOH . S 3 HOH C 9 509 262 HOH HOH . S 3 HOH C 10 510 129 HOH HOH . S 3 HOH C 11 511 229 HOH HOH . S 3 HOH C 12 512 84 HOH HOH . S 3 HOH C 13 513 60 HOH HOH . S 3 HOH C 14 514 95 HOH HOH . S 3 HOH C 15 515 143 HOH HOH . S 3 HOH C 16 516 53 HOH HOH . S 3 HOH C 17 517 178 HOH HOH . S 3 HOH C 18 518 141 HOH HOH . S 3 HOH C 19 519 52 HOH HOH . S 3 HOH C 20 520 277 HOH HOH . S 3 HOH C 21 521 139 HOH HOH . S 3 HOH C 22 522 270 HOH HOH . S 3 HOH C 23 523 185 HOH HOH . S 3 HOH C 24 524 273 HOH HOH . S 3 HOH C 25 525 230 HOH HOH . T 3 HOH D 1 501 12 HOH HOH . T 3 HOH D 2 502 206 HOH HOH . T 3 HOH D 3 503 37 HOH HOH . T 3 HOH D 4 504 255 HOH HOH . T 3 HOH D 5 505 13 HOH HOH . T 3 HOH D 6 506 198 HOH HOH . T 3 HOH D 7 507 21 HOH HOH . T 3 HOH D 8 508 100 HOH HOH . T 3 HOH D 9 509 253 HOH HOH . T 3 HOH D 10 510 35 HOH HOH . T 3 HOH D 11 511 218 HOH HOH . T 3 HOH D 12 512 109 HOH HOH . T 3 HOH D 13 513 45 HOH HOH . T 3 HOH D 14 514 175 HOH HOH . T 3 HOH D 15 515 234 HOH HOH . T 3 HOH D 16 516 86 HOH HOH . T 3 HOH D 17 517 124 HOH HOH . T 3 HOH D 18 518 33 HOH HOH . T 3 HOH D 19 519 74 HOH HOH . T 3 HOH D 20 520 207 HOH HOH . T 3 HOH D 21 521 172 HOH HOH . T 3 HOH D 22 522 138 HOH HOH . T 3 HOH D 23 523 144 HOH HOH . T 3 HOH D 24 524 126 HOH HOH . T 3 HOH D 25 525 179 HOH HOH . U 3 HOH E 1 501 181 HOH HOH . U 3 HOH E 2 502 221 HOH HOH . U 3 HOH E 3 503 111 HOH HOH . U 3 HOH E 4 504 94 HOH HOH . U 3 HOH E 5 505 128 HOH HOH . U 3 HOH E 6 506 257 HOH HOH . U 3 HOH E 7 507 101 HOH HOH . U 3 HOH E 8 508 205 HOH HOH . U 3 HOH E 9 509 157 HOH HOH . U 3 HOH E 10 510 134 HOH HOH . U 3 HOH E 11 511 238 HOH HOH . U 3 HOH E 12 512 269 HOH HOH . V 3 HOH F 1 501 173 HOH HOH . V 3 HOH F 2 502 99 HOH HOH . V 3 HOH F 3 503 115 HOH HOH . V 3 HOH F 4 504 248 HOH HOH . V 3 HOH F 5 505 81 HOH HOH . V 3 HOH F 6 506 97 HOH HOH . V 3 HOH F 7 507 283 HOH HOH . V 3 HOH F 8 508 209 HOH HOH . W 3 HOH G 1 501 146 HOH HOH . W 3 HOH G 2 502 110 HOH HOH . W 3 HOH G 3 503 266 HOH HOH . W 3 HOH G 4 504 224 HOH HOH . W 3 HOH G 5 505 245 HOH HOH . W 3 HOH G 6 506 11 HOH HOH . W 3 HOH G 7 507 201 HOH HOH . W 3 HOH G 8 508 171 HOH HOH . W 3 HOH G 9 509 133 HOH HOH . W 3 HOH G 10 510 70 HOH HOH . W 3 HOH G 11 511 127 HOH HOH . W 3 HOH G 12 512 259 HOH HOH . X 3 HOH H 1 501 23 HOH HOH . X 3 HOH H 2 502 189 HOH HOH . X 3 HOH H 3 503 232 HOH HOH . X 3 HOH H 4 504 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 WSR . . . M 2 14.401 -65.065 0.738 1 57.41 ? C4 WSR 401 E 1 HETATM 2 C C5 WSR . . . M 2 15.395 -65.061 -0.433 1 65.94 ? C5 WSR 401 E 1 HETATM 3 C C6 WSR . . . M 2 14.646 -65.027 -1.762 1 63.98 ? C6 WSR 401 E 1 HETATM 4 C C7 WSR . . . M 2 16.392 -63.9 -0.262 1 68.43 ? C7 WSR 401 E 1 HETATM 5 C C8 WSR . . . M 2 16.918 -63.796 1.196 1 62.63 ? C8 WSR 401 E 1 HETATM 6 C C10 WSR . . . M 2 18.449 -62.743 -0.343 1 59.46 ? C10 WSR 401 E 1 HETATM 7 C C13 WSR . . . M 2 21.855 -60.912 -0.674 1 66.98 ? C13 WSR 401 E 1 HETATM 8 C C15 WSR . . . M 2 20.965 -59.201 -2.298 1 63.33 ? C15 WSR 401 E 1 HETATM 9 C C17 WSR . . . M 2 20.221 -59.852 -4.577 1 57.65 ? C17 WSR 401 E 1 HETATM 10 C C20 WSR . . . M 2 22.047 -62.892 -2.997 1 63.57 ? C20 WSR 401 E 1 HETATM 11 C C21 WSR . . . M 2 19.728 -62.025 -2.381 1 60.59 ? C21 WSR 401 E 1 HETATM 12 C C22 WSR . . . M 2 18.945 -63.076 -3.177 1 66.24 ? C22 WSR 401 E 1 HETATM 13 C C24 WSR . . . M 2 17.7 -63.855 -1.106 1 62.79 ? C24 WSR 401 E 1 HETATM 14 C C1 WSR . . . M 2 12.768 -67.767 2.567 1 52.11 ? C1 WSR 401 E 1 HETATM 15 C C11 WSR . . . M 2 19.834 -62.406 -0.886 1 60.69 ? C11 WSR 401 E 1 HETATM 16 C C12 WSR . . . M 2 20.495 -61.283 -0.092 1 63.73 ? C12 WSR 401 E 1 HETATM 17 C C14 WSR . . . M 2 21.73 -60.519 -2.142 1 66.15 ? C14 WSR 401 E 1 HETATM 18 C C16 WSR . . . M 2 20.859 -58.764 -3.744 1 65.22 ? C16 WSR 401 E 1 HETATM 19 C C18 WSR . . . M 2 20.989 -61.162 -4.442 1 63.15 ? C18 WSR 401 E 1 HETATM 20 C C19 WSR . . . M 2 21.114 -61.664 -2.99 1 66.31 ? C19 WSR 401 E 1 HETATM 21 C C2 WSR . . . M 2 12.679 -66.408 1.992 1 54.42 ? C2 WSR 401 E 1 HETATM 22 C C23 WSR . . . M 2 17.575 -63.391 -2.562 1 60.33 ? C23 WSR 401 E 1 HETATM 23 C C25 WSR . . . M 2 18.427 -65.208 -1.021 1 60.94 ? C25 WSR 401 E 1 HETATM 24 C C3 WSR . . . M 2 13.377 -66.189 0.693 1 56 ? C3 WSR 401 E 1 HETATM 25 C C9 WSR . . . M 2 18.312 -63.144 1.123 1 57.62 ? C9 WSR 401 E 1 HETATM 26 O O1 WSR . . . M 2 12.092 -65.513 2.555 1 49.94 ? O1 WSR 401 E 1 HETATM 27 O O2 WSR . . . M 2 19.992 -57.568 -3.833 1 76.54 ? O2 WSR 401 E 1 HETATM 28 O O3 WSR . . . M 2 20.832 -57.139 -6.075 1 72.36 ? O3 WSR 401 E 1 HETATM 29 O O4 WSR . . . M 2 21.279 -55.57 -4.296 1 74.32 ? O4 WSR 401 E 1 HETATM 30 O O5 WSR . . . M 2 19.043 -55.796 -5.175 1 71.44 -1 O5 WSR 401 E 1 HETATM 31 S S1 WSR . . . M 2 20.31 -56.446 -4.917 1 82.6 ? S1 WSR 401 E 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 954 _model_server_stats.encode_time_ms 40 _model_server_stats.element_count 31 #