data_8ESL # _model_server_result.job_id hM7HTuSRGjWR3Sw18lPEuA _model_server_result.datetime_utc '2024-11-15 05:58:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8esl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 8ESL # _exptl.entry_id 8ESL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.653 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-1-[(2R)-6-fluoro-5-oxohexan-2-yl]-9a,11a-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-7-yl hydrogen sulfate (non-preferred name)' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ESL _cell.length_a 63.142 _cell.length_b 66.812 _cell.length_c 321.831 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ESL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 2 A CYS 2 1_555 E C1 WSR . A WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale2 B SG CYS 2 B CYS 2 1_555 F C1 WSR . B WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale3 C SG CYS 2 C CYS 2 1_555 G C1 WSR . C WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale4 D SG CYS 2 D CYS 2 1_555 H C1 WSR . D WSR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? # _chem_comp.formula 'C25 H41 F O5 S' _chem_comp.formula_weight 472.653 _chem_comp.id WSR _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-1-[(2R)-6-fluoro-5-oxohexan-2-yl]-9a,11a-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-7-yl hydrogen sulfate (non-preferred name)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 S1 WSR doub 374 n n C18 C17 WSR sing 375 n n C18 C19 WSR sing 376 n n C17 C16 WSR sing 377 n n C6 C5 WSR sing 378 n n C22 C23 WSR sing 379 n n C22 C21 WSR sing 380 n n C23 C24 WSR sing 381 n n S1 O3 WSR doub 382 n n S1 O4 WSR sing 383 n n S1 O2 WSR sing 384 n n C20 C19 WSR sing 385 n n C19 C21 WSR sing 386 n n C19 C14 WSR sing 387 n n C16 O2 WSR sing 388 n n C16 C15 WSR sing 389 n n C21 C11 WSR sing 390 n n C25 C24 WSR sing 391 n n C5 C7 WSR sing 392 n n C5 C4 WSR sing 393 n n C24 C7 WSR sing 394 n n C24 C10 WSR sing 395 n n C3 C4 WSR sing 396 n n C3 C2 WSR sing 397 n n C7 C8 WSR sing 398 n n C14 C15 WSR sing 399 n n C14 C13 WSR sing 400 n n C11 C10 WSR sing 401 n n C11 C12 WSR sing 402 n n C2 C1 WSR sing 403 n n C2 O1 WSR doub 404 n n C10 C9 WSR sing 405 n n C8 C9 WSR sing 406 n n C13 C12 WSR sing 407 n n C4 H1 WSR sing 408 n n C4 H2 WSR sing 409 n n C5 H3 WSR sing 410 n n C6 H4 WSR sing 411 n n C6 H5 WSR sing 412 n n C6 H6 WSR sing 413 n n C7 H7 WSR sing 414 n n C8 H8 WSR sing 415 n n C8 H9 WSR sing 416 n n C10 H10 WSR sing 417 n n C13 H11 WSR sing 418 n n C13 H12 WSR sing 419 n n C15 H13 WSR sing 420 n n C15 H14 WSR sing 421 n n C17 H15 WSR sing 422 n n C17 H16 WSR sing 423 n n C20 H17 WSR sing 424 n n C20 H18 WSR sing 425 n n C20 H19 WSR sing 426 n n C21 H20 WSR sing 427 n n C22 H21 WSR sing 428 n n C22 H22 WSR sing 429 n n C1 H23 WSR sing 430 n n C1 H24 WSR sing 431 n n C11 H26 WSR sing 432 n n C12 H27 WSR sing 433 n n C12 H28 WSR sing 434 n n C14 H29 WSR sing 435 n n C16 H30 WSR sing 436 n n C18 H31 WSR sing 437 n n C18 H32 WSR sing 438 n n C23 H33 WSR sing 439 n n C23 H34 WSR sing 440 n n C25 H35 WSR sing 441 n n C25 H36 WSR sing 442 n n C25 H37 WSR sing 443 n n C3 H38 WSR sing 444 n n C3 H39 WSR sing 445 n n C9 H40 WSR sing 446 n n C9 H41 WSR sing 447 n n C1 F1 WSR sing 448 n n O4 H25 WSR sing 449 n n # _atom_sites.entry_id 8ESL _atom_sites.fract_transf_matrix[1][1] 0.015837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 WSR A 1 401 401 WSR LIG . F 2 WSR B 1 401 401 WSR LIG . G 2 WSR C 1 401 401 WSR LIG . H 2 WSR D 1 401 401 WSR LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 WSR . . . H 2 36.467 23.179 59.636 0.9 101.03 ? C4 WSR 401 D 1 HETATM 2 C C5 WSR . . . H 2 37.478 23.251 60.792 0.9 95.65 ? C5 WSR 401 D 1 HETATM 3 C C6 WSR . . . H 2 38.171 21.902 60.959 0.9 95.53 ? C6 WSR 401 D 1 HETATM 4 C C7 WSR . . . H 2 38.461 24.419 60.586 0.9 83.46 ? C7 WSR 401 D 1 HETATM 5 C C8 WSR . . . H 2 37.744 25.717 60.127 0.9 79.87 ? C8 WSR 401 D 1 HETATM 6 C C10 WSR . . . H 2 39.869 26.234 61.17 0.9 81.42 ? C10 WSR 401 D 1 HETATM 7 C C13 WSR . . . H 2 42.152 29.127 62.397 0.9 84.44 ? C13 WSR 401 D 1 HETATM 8 C C15 WSR . . . H 2 44.319 28.019 61.731 0.9 86.8 ? C15 WSR 401 D 1 HETATM 9 C C17 WSR . . . H 2 45.079 25.915 62.805 0.9 80.71 ? C17 WSR 401 D 1 HETATM 10 C C20 WSR . . . H 2 42.105 27.314 64.875 0.9 82.59 ? C20 WSR 401 D 1 HETATM 11 C C21 WSR . . . H 2 41.939 26.194 62.594 0.9 78.57 ? C21 WSR 401 D 1 HETATM 12 C C22 WSR . . . H 2 41.475 24.832 63.127 0.9 83.98 ? C22 WSR 401 D 1 HETATM 13 C C24 WSR . . . H 2 39.333 24.921 61.775 0.9 81.88 ? C24 WSR 401 D 1 HETATM 14 C C1 WSR . . . H 2 35.223 21.119 57.584 0.9 99.85 ? C1 WSR 401 D 1 HETATM 15 C C11 WSR . . . H 2 40.749 27.054 62.109 0.9 81.04 ? C11 WSR 401 D 1 HETATM 16 C C12 WSR . . . H 2 41.255 28.335 61.452 0.9 88.09 ? C12 WSR 401 D 1 HETATM 17 C C14 WSR . . . H 2 43.329 28.282 62.871 0.9 79.94 ? C14 WSR 401 D 1 HETATM 18 C C16 WSR . . . H 2 45.522 27.223 62.192 0.9 89.13 ? C16 WSR 401 D 1 HETATM 19 C C18 WSR . . . H 2 44.112 26.162 63.96 0.9 78.92 ? C18 WSR 401 D 1 HETATM 20 C C19 WSR . . . H 2 42.861 26.978 63.574 0.9 76.96 ? C19 WSR 401 D 1 HETATM 21 C C2 WSR . . . H 2 36.048 22.308 57.28 0.9 105.67 ? C2 WSR 401 D 1 HETATM 22 C C23 WSR . . . H 2 40.56 24.083 62.15 0.9 83.88 ? C23 WSR 401 D 1 HETATM 23 C C25 WSR . . . H 2 38.444 25.17 63.005 0.9 80.33 ? C25 WSR 401 D 1 HETATM 24 C C3 WSR . . . H 2 37.055 22.713 58.311 0.9 101.87 ? C3 WSR 401 D 1 HETATM 25 C C9 WSR . . . H 2 38.646 26.897 60.543 0.9 80.09 ? C9 WSR 401 D 1 HETATM 26 O O1 WSR . . . H 2 35.916 22.923 56.25 0.9 113.89 ? O1 WSR 401 D 1 HETATM 27 O O2 WSR . . . H 2 46.398 26.919 61.039 0.9 104.64 ? O2 WSR 401 D 1 HETATM 28 O O3 WSR . . . H 2 48.525 26.803 59.883 0.9 91.82 ? O3 WSR 401 D 1 HETATM 29 O O4 WSR . . . H 2 48.032 28.681 61.313 0.9 101.96 ? O4 WSR 401 D 1 HETATM 30 O O5 WSR . . . H 2 48.447 26.509 62.276 0.9 95.67 -1 O5 WSR 401 D 1 HETATM 31 S S1 WSR . . . H 2 47.953 27.247 61.135 0.9 117.25 ? S1 WSR 401 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #