data_8ESM # _model_server_result.job_id D76mZqsdiejIIE9Khaua8w _model_server_result.datetime_utc '2024-10-18 11:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8esm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 8ESM # _exptl.entry_id 8ESM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 394.467 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{(1r,4r)-4-[4-(4-amino-7,7-dimethyl-7H-pyrimido[4,5-b][1,4]oxazin-6-yl)phenyl]cyclohexyl}acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ESM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ESM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C22 H26 N4 O3' _chem_comp.formula_weight 394.467 _chem_comp.id WS0 _chem_comp.mon_nstd_flag . _chem_comp.name '{(1r,4r)-4-[4-(4-amino-7,7-dimethyl-7H-pyrimido[4,5-b][1,4]oxazin-6-yl)phenyl]cyclohexyl}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C WS0 doub 374 n n C C1 WS0 sing 375 n n C O1 WS0 sing 376 n n C1 C2 WS0 sing 377 n n C3 C2 WS0 sing 378 n n C3 C4 WS0 sing 379 n n C2 C21 WS0 sing 380 n n C21 C20 WS0 sing 381 n n C4 C5 WS0 sing 382 n n C5 C20 WS0 sing 383 n n C5 C6 WS0 sing 384 n n C6 C19 WS0 doub 385 n y C6 C7 WS0 sing 386 n y C19 C18 WS0 sing 387 n y C7 C8 WS0 doub 388 n y C18 C9 WS0 doub 389 n y C8 C9 WS0 sing 390 n y C9 C10 WS0 sing 391 n n C10 N WS0 doub 392 n n C10 C15 WS0 sing 393 n n N C11 WS0 sing 394 n n C17 C15 WS0 sing 395 n n N1 C12 WS0 sing 396 n n C15 C16 WS0 sing 397 n n C15 O2 WS0 sing 398 n n C11 C12 WS0 doub 399 n y C11 C14 WS0 sing 400 n y C12 N2 WS0 sing 401 n y O2 C14 WS0 sing 402 n n C14 N3 WS0 doub 403 n y N2 C13 WS0 doub 404 n y N3 C13 WS0 sing 405 n y C1 H1 WS0 sing 406 n n C1 H2 WS0 sing 407 n n C13 H3 WS0 sing 408 n n C16 H4 WS0 sing 409 n n C16 H5 WS0 sing 410 n n C16 H6 WS0 sing 411 n n C17 H7 WS0 sing 412 n n C17 H8 WS0 sing 413 n n C17 H9 WS0 sing 414 n n C18 H10 WS0 sing 415 n n C19 H11 WS0 sing 416 n n C2 H12 WS0 sing 417 n n C20 H13 WS0 sing 418 n n C20 H14 WS0 sing 419 n n C3 H15 WS0 sing 420 n n C3 H16 WS0 sing 421 n n C4 H17 WS0 sing 422 n n C4 H18 WS0 sing 423 n n C5 H19 WS0 sing 424 n n C7 H20 WS0 sing 425 n n C8 H21 WS0 sing 426 n n N1 H22 WS0 sing 427 n n N1 H23 WS0 sing 428 n n O1 H24 WS0 sing 429 n n C21 H25 WS0 sing 430 n n C21 H26 WS0 sing 431 n n # _atom_sites.entry_id 8ESM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WS0 A 1 501 1 WS0 863 . D 2 WS0 B 1 501 2 WS0 863 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WS0 . . . D 2 85.432 112.296 94.067 1 44.65 ? C1 WS0 501 B 1 HETATM 2 C C10 WS0 . . . D 2 86.799 106.651 102.332 1 44.65 ? C10 WS0 501 B 1 HETATM 3 C C11 WS0 . . . D 2 88.235 105.35 103.547 1 44.65 ? C11 WS0 501 B 1 HETATM 4 C C12 WS0 . . . D 2 89.476 104.702 103.72 1 44.65 ? C12 WS0 501 B 1 HETATM 5 C C13 WS0 . . . D 2 88.617 103.711 105.615 1 44.65 ? C13 WS0 501 B 1 HETATM 6 C C14 WS0 . . . D 2 87.28 105.081 104.548 1 44.65 ? C14 WS0 501 B 1 HETATM 7 C C15 WS0 . . . D 2 85.709 106.482 103.372 1 44.65 ? C15 WS0 501 B 1 HETATM 8 C C16 WS0 . . . D 2 85.256 107.82 103.926 1 44.65 ? C16 WS0 501 B 1 HETATM 9 C C17 WS0 . . . D 2 84.542 105.704 102.798 1 44.65 ? C17 WS0 501 B 1 HETATM 10 C C18 WS0 . . . D 2 86.746 108.758 101.003 1 44.65 ? C18 WS0 501 B 1 HETATM 11 C C19 WS0 . . . D 2 86.576 109.422 99.803 1 44.65 ? C19 WS0 501 B 1 HETATM 12 C C2 WS0 . . . D 2 85.433 111.645 95.447 1 44.65 ? C2 WS0 501 B 1 HETATM 13 C C20 WS0 . . . D 2 86.85 110.787 97.343 1 44.65 ? C20 WS0 501 B 1 HETATM 14 C C3 WS0 . . . D 2 84.702 110.312 95.443 1 44.65 ? C3 WS0 501 B 1 HETATM 15 C C4 WS0 . . . D 2 84.684 109.668 96.822 1 44.65 ? C4 WS0 501 B 1 HETATM 16 C C5 WS0 . . . D 2 86.108 109.451 97.325 1 44.65 ? C5 WS0 501 B 1 HETATM 17 C C6 WS0 . . . D 2 86.161 108.748 98.665 1 44.65 ? C6 WS0 501 B 1 HETATM 18 C C7 WS0 . . . D 2 85.88 107.396 98.771 1 44.65 ? C7 WS0 501 B 1 HETATM 19 C C8 WS0 . . . D 2 86.047 106.725 99.966 1 44.65 ? C8 WS0 501 B 1 HETATM 20 C C9 WS0 . . . D 2 86.502 107.393 101.097 1 44.65 ? C9 WS0 501 B 1 HETATM 21 N N1 WS0 . . . D 2 90.511 104.867 102.895 1 44.65 ? N1 WS0 501 B 1 HETATM 22 N N2 WS0 . . . D 2 89.633 103.879 104.777 1 44.65 ? N2 WS0 501 B 1 HETATM 23 O O1 WS0 . . . D 2 85.203 114.572 94.632 1 44.65 ? O1 WS0 501 B 1 HETATM 24 O O2 WS0 . . . D 2 86.122 105.724 104.548 1 44.65 ? O2 WS0 501 B 1 HETATM 25 N N WS0 . . . D 2 87.967 106.135 102.452 1 44.65 ? N WS0 501 B 1 HETATM 26 C C WS0 . . . D 2 85.987 113.696 94.054 1 44.65 ? C WS0 501 B 1 HETATM 27 O O WS0 . . . D 2 87.06 113.978 93.559 1 44.65 ? O WS0 501 B 1 HETATM 28 C C21 WS0 . . . D 2 86.844 111.431 95.965 1 44.65 ? C21 WS0 501 B 1 HETATM 29 N N3 WS0 . . . D 2 87.421 104.274 105.57 1 44.65 ? N3 WS0 501 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #