data_8ESV # _model_server_result.job_id usdZmEj8GW_vAAzgVrWpaw _model_server_result.datetime_utc '2024-12-27 16:44:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8esv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 8ESV # _exptl.entry_id 8ESV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ESV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ESV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN MAN C1 O1 . O3 HO3 . sing 4 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 6 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 C 1 NAG A 749 NAG 5 n E NAG 2 C 2 NAG A 750 NAG 5 n E MAN 3 C 3 MAN A 751 MAN 5 n E MAN 4 C 4 MAN A 752 MAN 6 n F NAG 1 D 1 NAG A 753 NAG 6 n F NAG 2 D 2 NAG A 754 NAG 6 n F MAN 3 D 3 MAN A 755 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 222 1_555 A SG CYS 108 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 139 A CYS 344 1_555 A SG CYS 246 A CYS 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 194 A CYS 399 1_555 A SG CYS 230 A CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 255 A CYS 460 1_555 A SG CYS 290 A CYS 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 266 A CYS 471 1_555 A SG CYS 279 A CYS 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 268 A CYS 473 1_555 A SG CYS 274 A CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 278 A CYS 483 1_555 A SG CYS 310 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 A SG CYS 298 A CYS 503 1_555 A SG CYS 306 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 305 A CYS 510 1_555 A SG CYS 331 A CYS 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 A SG CYS 319 A CYS 524 1_555 A SG CYS 338 A CYS 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 A SG CYS 325 A CYS 530 1_555 A SG CYS 357 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 A SG CYS 350 A CYS 555 1_555 A SG CYS 362 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 A SG CYS 367 A CYS 572 1_555 A SG CYS 393 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 A SG CYS 375 A CYS 580 1_555 A SG CYS 402 A CYS 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 A SG CYS 377 A CYS 582 1_555 A SG CYS 392 A CYS 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 A SG CYS 389 A CYS 594 1_555 A SG CYS 434 A CYS 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 A SG CYS 427 A CYS 632 1_555 A SG CYS 440 A CYS 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 B SG CYS 166 B CYS 154 1_555 B SG CYS 231 B CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf19 B SG CYS 167 B CYS 155 1_555 B SG CYS 197 B CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf20 B SG CYS 183 B CYS 171 1_555 B SG CYS 191 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 B SG CYS 198 B CYS 186 1_555 B SG CYS 210 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf22 C SG CYS 22 H CYS 41 1_555 C SG CYS 95 H CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf23 D SG CYS 23 L CYS 45 1_555 D SG CYS 89 L CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 73 A ASN 278 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 234 A ASN 439 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 346 A ASN 551 1_555 G C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 E O4 NAG . C NAG 2 1_555 E C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 E O3 MAN . C MAN 3 1_555 E C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 F O4 NAG . D NAG 1 1_555 F C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 F O4 NAG . D NAG 2 1_555 F C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A NE2 HIS 178 A HIS 383 1_555 I ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A NE2 HIS 182 A HIS 387 1_555 I ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc3 A NE2 HIS 188 A HIS 393 1_555 I ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 A OD1 ASN 257 A ASN 462 1_555 H CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc5 A O MET 259 A MET 464 1_555 H CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc6 A OE2 GLU 264 A GLU 469 1_555 H CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc7 A OD2 ASP 267 A ASP 472 1_555 H CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc8 I ZN ZN . A ZN 803 1_555 J O1 BAT . A BAT 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc9 I ZN ZN . A ZN 803 1_555 J N1 BAT . A BAT 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc10 I ZN ZN . A ZN 803 1_555 J O2 BAT . A BAT 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 323 n n C1 O1 NAG sing 324 n n C1 O5 NAG sing 325 n n C1 H1 NAG sing 326 n n C2 C3 NAG sing 327 n n C2 N2 NAG sing 328 n n C2 H2 NAG sing 329 n n C3 C4 NAG sing 330 n n C3 O3 NAG sing 331 n n C3 H3 NAG sing 332 n n C4 C5 NAG sing 333 n n C4 O4 NAG sing 334 n n C4 H4 NAG sing 335 n n C5 C6 NAG sing 336 n n C5 O5 NAG sing 337 n n C5 H5 NAG sing 338 n n C6 O6 NAG sing 339 n n C6 H61 NAG sing 340 n n C6 H62 NAG sing 341 n n C7 C8 NAG sing 342 n n C7 N2 NAG sing 343 n n C7 O7 NAG doub 344 n n C8 H81 NAG sing 345 n n C8 H82 NAG sing 346 n n C8 H83 NAG sing 347 n n N2 HN2 NAG sing 348 n n O1 HO1 NAG sing 349 n n O3 HO3 NAG sing 350 n n O4 HO4 NAG sing 351 n n O6 HO6 NAG sing 352 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8ESV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 NAG A 1 801 756 NAG NAG . H 8 CA A 1 802 757 CA CA . I 9 ZN A 1 803 758 ZN ZN . J 10 BAT A 1 804 759 BAT BAT . K 11 Y01 B 1 301 297 Y01 Y01 . L 11 Y01 B 1 302 298 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 7 218.645 162.898 224.955 1 87.87 ? C1 NAG 801 A 1 HETATM 2 C C2 NAG . . . G 7 218.154 162.751 226.4 1 87.62 ? C2 NAG 801 A 1 HETATM 3 C C3 NAG . . . G 7 219.02 163.585 227.342 1 84.15 ? C3 NAG 801 A 1 HETATM 4 C C4 NAG . . . G 7 220.493 163.247 227.152 1 82.33 ? C4 NAG 801 A 1 HETATM 5 C C5 NAG . . . G 7 220.879 163.386 225.683 1 82.83 ? C5 NAG 801 A 1 HETATM 6 C C6 NAG . . . G 7 222.303 162.97 225.4 1 84.38 ? C6 NAG 801 A 1 HETATM 7 C C7 NAG . . . G 7 215.918 162.551 227.389 1 87.44 ? C7 NAG 801 A 1 HETATM 8 C C8 NAG . . . G 7 214.51 163.064 227.384 1 85.6 ? C8 NAG 801 A 1 HETATM 9 N N2 NAG . . . G 7 216.756 163.129 226.522 1 88.02 ? N2 NAG 801 A 1 HETATM 10 O O3 NAG . . . G 7 218.634 163.336 228.688 1 84.23 ? O3 NAG 801 A 1 HETATM 11 O O4 NAG . . . G 7 221.298 164.123 227.932 1 86.28 ? O4 NAG 801 A 1 HETATM 12 O O5 NAG . . . G 7 220.035 162.548 224.88 1 85.26 ? O5 NAG 801 A 1 HETATM 13 O O6 NAG . . . G 7 222.821 163.64 224.259 1 83.73 ? O6 NAG 801 A 1 HETATM 14 O O7 NAG . . . G 7 216.281 161.655 228.144 1 87.29 ? O7 NAG 801 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 14 #