data_8ET5 # _model_server_result.job_id kf5onK60mmvNLu5P9STRtg _model_server_result.datetime_utc '2024-11-06 02:54:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8et5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 8ET5 # _exptl.entry_id 8ET5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8ET5 _cell.length_a 179.593 _cell.length_b 179.593 _cell.length_c 184.772 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ET5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall 'P 64 2 (x,y,z+1/6)' _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 89.7965 -155.5321 0 3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -61.590667 4 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.7965 -155.5321 -61.590667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 254 A PRO 339 1_555 A N CSD 255 A CSD 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CSD 255 A CSD 340 1_555 A N ASP 256 A ASP 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A O ILE 316 A ILE 401 1_555 I MG MG . A MG 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc2 A O ILE 316 A ILE 401 1_555 I MG MG . A MG 708 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc3 A OD1 ASP 453 A ASP 538 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 A O MET 458 A MET 543 1_555 H MG MG . A MG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc5 A O MET 458 A MET 543 1_555 H MG MG . A MG 707 12_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc6 A OE1 GLN 461 A GLN 546 1_555 H MG MG . A MG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc7 A OE1 GLN 461 A GLN 546 1_555 H MG MG . A MG 707 12_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc8 A OD1 ASN 480 A ASN 565 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc9 A O HIS 482 A HIS 567 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc10 B MG MG . A MG 701 1_555 F OAK AUJ . A AUJ 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc11 B MG MG . A MG 701 1_555 F OAI AUJ . A AUJ 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc12 B MG MG . A MG 701 1_555 N O HOH . A HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 153 n n PA O2A FAD sing 154 n n PA O5B FAD sing 155 n n PA O3P FAD sing 156 n n O2A HOA2 FAD sing 157 n n O5B C5B FAD sing 158 n n C5B C4B FAD sing 159 n n C5B H51A FAD sing 160 n n C5B H52A FAD sing 161 n n C4B O4B FAD sing 162 n n C4B C3B FAD sing 163 n n C4B H4B FAD sing 164 n n O4B C1B FAD sing 165 n n C3B O3B FAD sing 166 n n C3B C2B FAD sing 167 n n C3B H3B FAD sing 168 n n O3B HO3A FAD sing 169 n n C2B O2B FAD sing 170 n n C2B C1B FAD sing 171 n n C2B H2B FAD sing 172 n n O2B HO2A FAD sing 173 n n C1B N9A FAD sing 174 n n C1B H1B FAD sing 175 n n N9A C8A FAD sing 176 n y N9A C4A FAD sing 177 n y C8A N7A FAD doub 178 n y C8A H8A FAD sing 179 n n N7A C5A FAD sing 180 n y C5A C6A FAD sing 181 n y C5A C4A FAD doub 182 n y C6A N6A FAD sing 183 n n C6A N1A FAD doub 184 n y N6A H61A FAD sing 185 n n N6A H62A FAD sing 186 n n N1A C2A FAD sing 187 n y C2A N3A FAD doub 188 n y C2A H2A FAD sing 189 n n N3A C4A FAD sing 190 n y N1 C2 FAD sing 191 n n N1 C10 FAD doub 192 n n C2 O2 FAD doub 193 n n C2 N3 FAD sing 194 n n N3 C4 FAD sing 195 n n N3 HN3 FAD sing 196 n n C4 O4 FAD doub 197 n n C4 C4X FAD sing 198 n n C4X N5 FAD doub 199 n n C4X C10 FAD sing 200 n n N5 C5X FAD sing 201 n n C5X C6 FAD doub 202 n y C5X C9A FAD sing 203 n y C6 C7 FAD sing 204 n y C6 H6 FAD sing 205 n n C7 C7M FAD sing 206 n n C7 C8 FAD doub 207 n y C7M HM71 FAD sing 208 n n C7M HM72 FAD sing 209 n n C7M HM73 FAD sing 210 n n C8 C8M FAD sing 211 n n C8 C9 FAD sing 212 n y C8M HM81 FAD sing 213 n n C8M HM82 FAD sing 214 n n C8M HM83 FAD sing 215 n n C9 C9A FAD doub 216 n y C9 H9 FAD sing 217 n n C9A N10 FAD sing 218 n n N10 C10 FAD sing 219 n n N10 C1' FAD sing 220 n n C1' C2' FAD sing 221 n n C1' "H1'1" FAD sing 222 n n C1' "H1'2" FAD sing 223 n n C2' O2' FAD sing 224 n n C2' C3' FAD sing 225 n n C2' H2' FAD sing 226 n n O2' HO2' FAD sing 227 n n C3' O3' FAD sing 228 n n C3' C4' FAD sing 229 n n C3' H3' FAD sing 230 n n O3' HO3' FAD sing 231 n n C4' O4' FAD sing 232 n n C4' C5' FAD sing 233 n n C4' H4' FAD sing 234 n n O4' HO4' FAD sing 235 n n C5' O5' FAD sing 236 n n C5' "H5'1" FAD sing 237 n n C5' "H5'2" FAD sing 238 n n O5' P FAD sing 239 n n P O1P FAD doub 240 n n P O2P FAD sing 241 n n P O3P FAD sing 242 n n O2P HOP2 FAD sing 243 n n # _atom_sites.entry_id 8ET5 _atom_sites.fract_transf_matrix[1][1] 0.005568 _atom_sites.fract_transf_matrix[1][2] 0.003215 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 701 701 MG MG . C 3 FAD A 1 702 702 FAD FAD . D 4 WRQ A 1 703 801 WRQ AS . E 5 NHE A 1 704 1101 NHE NHE . F 6 AUJ A 1 705 1201 AUJ DR2 . G 7 TLA A 1 706 1301 TLA TAR . H 2 MG A 1 707 1 MG MG . I 2 MG A 1 708 2 MG MG . J 8 SO4 A 1 709 1 SO4 SO4 . K 8 SO4 A 1 710 3 SO4 SO4 . L 8 SO4 A 1 711 4 SO4 SO4 . M 8 SO4 A 1 712 5 SO4 SO4 . N 9 HOH A 1 1401 1401 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 3 58.216 -68.273 -8.752 1 52.74 ? PA FAD 702 A 1 HETATM 2 O O1A FAD . . . C 3 58.935 -67.027 -8.294 1 35.63 ? O1A FAD 702 A 1 HETATM 3 O O2A FAD . . . C 3 58.726 -68.687 -10.115 1 60.17 ? O2A FAD 702 A 1 HETATM 4 O O5B FAD . . . C 3 56.565 -67.961 -8.837 1 70.49 ? O5B FAD 702 A 1 HETATM 5 C C5B FAD . . . C 3 55.949 -67.263 -7.743 1 50.69 ? C5B FAD 702 A 1 HETATM 6 C C4B FAD . . . C 3 55.091 -68.146 -7.077 1 35.25 ? C4B FAD 702 A 1 HETATM 7 O O4B FAD . . . C 3 54.294 -67.4 -6.026 1 54.64 ? O4B FAD 702 A 1 HETATM 8 C C3B FAD . . . C 3 54.03 -68.762 -8.102 1 52.4 ? C3B FAD 702 A 1 HETATM 9 O O3B FAD . . . C 3 53.607 -70.129 -7.646 1 44.54 ? O3B FAD 702 A 1 HETATM 10 C C2B FAD . . . C 3 52.883 -67.774 -7.967 1 40.37 ? C2B FAD 702 A 1 HETATM 11 O O2B FAD . . . C 3 51.585 -68.457 -8.142 1 53.92 ? O2B FAD 702 A 1 HETATM 12 C C1B FAD . . . C 3 53.045 -67.241 -6.405 1 47.79 ? C1B FAD 702 A 1 HETATM 13 N N9A FAD . . . C 3 52.685 -65.86 -6.316 1 47.2 ? N9A FAD 702 A 1 HETATM 14 C C8A FAD . . . C 3 52.978 -64.926 -7.201 1 49.71 ? C8A FAD 702 A 1 HETATM 15 N N7A FAD . . . C 3 52.483 -63.765 -6.783 1 48.85 ? N7A FAD 702 A 1 HETATM 16 C C5A FAD . . . C 3 51.86 -63.954 -5.608 1 55.79 ? C5A FAD 702 A 1 HETATM 17 C C6A FAD . . . C 3 51.16 -63.137 -4.695 1 53.99 ? C6A FAD 702 A 1 HETATM 18 N N6A FAD . . . C 3 50.99 -61.714 -4.954 1 69.52 ? N6A FAD 702 A 1 HETATM 19 N N1A FAD . . . C 3 50.661 -63.686 -3.596 1 52.42 ? N1A FAD 702 A 1 HETATM 20 C C2A FAD . . . C 3 50.803 -64.978 -3.339 1 57.76 ? C2A FAD 702 A 1 HETATM 21 N N3A FAD . . . C 3 51.454 -65.775 -4.176 1 49.04 ? N3A FAD 702 A 1 HETATM 22 C C4A FAD . . . C 3 51.989 -65.297 -5.308 1 50.56 ? C4A FAD 702 A 1 HETATM 23 N N1 FAD . . . C 3 66.335 -71.627 -7.404 1 66.81 ? N1 FAD 702 A 1 HETATM 24 C C2 FAD . . . C 3 66.549 -71.855 -6.115 1 59.38 ? C2 FAD 702 A 1 HETATM 25 O O2 FAD . . . C 3 65.593 -71.437 -5.185 1 46.6 ? O2 FAD 702 A 1 HETATM 26 N N3 FAD . . . C 3 67.646 -72.471 -5.684 1 53.65 ? N3 FAD 702 A 1 HETATM 27 C C4 FAD . . . C 3 68.57 -72.879 -6.541 1 58.16 ? C4 FAD 702 A 1 HETATM 28 O O4 FAD . . . C 3 69.726 -73.529 -6.074 1 53.22 ? O4 FAD 702 A 1 HETATM 29 C C4X FAD . . . C 3 68.387 -72.658 -7.922 1 59.67 ? C4X FAD 702 A 1 HETATM 30 N N5 FAD . . . C 3 69.302 -73.053 -8.835 1 61.06 ? N5 FAD 702 A 1 HETATM 31 C C5X FAD . . . C 3 69.197 -72.533 -10.075 1 59.63 ? C5X FAD 702 A 1 HETATM 32 C C6 FAD . . . C 3 70.292 -72.662 -10.952 1 47.39 ? C6 FAD 702 A 1 HETATM 33 C C7 FAD . . . C 3 70.211 -72.131 -12.236 1 47.24 ? C7 FAD 702 A 1 HETATM 34 C C7M FAD . . . C 3 71.401 -72.266 -13.194 1 41.48 ? C7M FAD 702 A 1 HETATM 35 C C8 FAD . . . C 3 69.051 -71.477 -12.653 1 51.76 ? C8 FAD 702 A 1 HETATM 36 C C8M FAD . . . C 3 68.969 -70.897 -14.065 1 35.84 ? C8M FAD 702 A 1 HETATM 37 C C9 FAD . . . C 3 67.964 -71.35 -11.783 1 59.82 ? C9 FAD 702 A 1 HETATM 38 C C9A FAD . . . C 3 68.049 -71.887 -10.484 1 67.44 ? C9A FAD 702 A 1 HETATM 39 N N10 FAD . . . C 3 67.004 -71.771 -9.629 1 51.8 ? N10 FAD 702 A 1 HETATM 40 C C10 FAD . . . C 3 67.234 -72.016 -8.322 1 52.31 ? C10 FAD 702 A 1 HETATM 41 C C1' FAD . . . C 3 65.821 -70.954 -10.025 1 56.84 ? C1' FAD 702 A 1 HETATM 42 C C2' FAD . . . C 3 64.595 -71.866 -10.335 1 40.02 ? C2' FAD 702 A 1 HETATM 43 O O2' FAD . . . C 3 64.728 -72.906 -11.307 1 52.54 ? O2' FAD 702 A 1 HETATM 44 C C3' FAD . . . C 3 63.175 -71.373 -9.955 1 50.28 ? C3' FAD 702 A 1 HETATM 45 O O3' FAD . . . C 3 62.966 -70.116 -10.497 1 53.88 ? O3' FAD 702 A 1 HETATM 46 C C4' FAD . . . C 3 63.04 -71.309 -8.43 1 50.38 ? C4' FAD 702 A 1 HETATM 47 O O4' FAD . . . C 3 63.592 -72.443 -7.867 1 65.69 ? O4' FAD 702 A 1 HETATM 48 C C5' FAD . . . C 3 61.538 -71.242 -8.051 1 55.55 ? C5' FAD 702 A 1 HETATM 49 O O5' FAD . . . C 3 61.215 -69.895 -7.692 1 41.29 ? O5' FAD 702 A 1 HETATM 50 P P FAD . . . C 3 59.872 -69.655 -6.701 1 49.11 ? P FAD 702 A 1 HETATM 51 O O1P FAD . . . C 3 59.725 -70.837 -5.769 1 44.7 ? O1P FAD 702 A 1 HETATM 52 O O2P FAD . . . C 3 60.062 -68.389 -5.898 1 44.29 ? O2P FAD 702 A 1 HETATM 53 O O3P FAD . . . C 3 58.484 -69.517 -7.646 1 49.04 ? O3P FAD 702 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #