data_8ET7 # _model_server_result.job_id haHvAeaoGanT1upzWxX7uA _model_server_result.datetime_utc '2024-11-05 12:35:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8et7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8ET7 # _exptl.entry_id 8ET7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 255.355 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(BENZHYDRYLOXY)ETHYL]-N,N-DIMETHYLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ET7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ET7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 534 NAG 2 n B NAG 2 B 2 NAG A 535 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 121 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 62 A CYS 62 1_555 A SG CYS 102 A CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 88 A CYS 88 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 71 A ASN 71 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C17 H21 N O' _chem_comp.formula_weight 255.355 _chem_comp.id 2PM _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(BENZHYDRYLOXY)ETHYL]-N,N-DIMETHYLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIPHENHYDRAMINE;ANTISTOMINUM;BENZHYDRAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 2PM doub 1 n y C1 C6 2PM sing 2 n y C1 H1 2PM sing 3 n n C2 C3 2PM sing 4 n y C2 H2 2PM sing 5 n n C3 C4 2PM doub 6 n y C3 H3 2PM sing 7 n n C4 C5 2PM sing 8 n y C4 H4 2PM sing 9 n n C5 C6 2PM doub 10 n y C5 C7 2PM sing 11 n n C6 H6 2PM sing 12 n n C7 C8 2PM sing 13 n n C7 O1 2PM sing 14 n n C7 H7 2PM sing 15 n n C8 C9 2PM doub 16 n y C8 C13 2PM sing 17 n y C9 C10 2PM sing 18 n y C9 H9 2PM sing 19 n n C10 C11 2PM doub 20 n y C10 H10 2PM sing 21 n n C11 C12 2PM sing 22 n y C11 H11 2PM sing 23 n n C12 C13 2PM doub 24 n y C12 H12 2PM sing 25 n n C13 H13 2PM sing 26 n n O1 C14 2PM sing 27 n n C14 C15 2PM sing 28 n n C14 H141 2PM sing 29 n n C14 H142 2PM sing 30 n n C15 N1 2PM sing 31 n n C15 H151 2PM sing 32 n n C15 H152 2PM sing 33 n n N1 C16 2PM sing 34 n n N1 C17 2PM sing 35 n n C16 H161 2PM sing 36 n n C16 H162 2PM sing 37 n n C16 H163 2PM sing 38 n n C17 H171 2PM sing 39 n n C17 H172 2PM sing 40 n n C17 H173 2PM sing 41 n n # _atom_sites.entry_id 8ET7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 2PM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id 2PM _pdbx_nonpoly_scheme.auth_mon_id BDL _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2PM . . . C 3 112.608 108.803 108.702 1 73.3 ? C1 2PM 601 A 1 HETATM 2 C C2 2PM . . . C 3 113.131 109.797 107.884 1 73.3 ? C2 2PM 601 A 1 HETATM 3 C C3 2PM . . . C 3 112.824 109.774 106.53 1 73.3 ? C3 2PM 601 A 1 HETATM 4 C C4 2PM . . . C 3 112.013 108.78 105.998 1 73.3 ? C4 2PM 601 A 1 HETATM 5 C C5 2PM . . . C 3 111.483 107.775 106.818 1 73.3 ? C5 2PM 601 A 1 HETATM 6 C C6 2PM . . . C 3 111.796 107.805 108.175 1 73.3 ? C6 2PM 601 A 1 HETATM 7 C C7 2PM . . . C 3 110.597 106.685 106.249 1 73.3 ? C7 2PM 601 A 1 HETATM 8 C C8 2PM . . . C 3 109.177 107.191 106.109 1 73.3 ? C8 2PM 601 A 1 HETATM 9 C C9 2PM . . . C 3 108.811 108.083 105.103 1 73.3 ? C9 2PM 601 A 1 HETATM 10 C C10 2PM . . . C 3 107.5 108.529 104.987 1 73.3 ? C10 2PM 601 A 1 HETATM 11 C C11 2PM . . . C 3 106.521 108.088 105.873 1 73.3 ? C11 2PM 601 A 1 HETATM 12 C C12 2PM . . . C 3 106.879 107.196 106.873 1 73.3 ? C12 2PM 601 A 1 HETATM 13 C C13 2PM . . . C 3 108.186 106.747 106.993 1 73.3 ? C13 2PM 601 A 1 HETATM 14 O O1 2PM . . . C 3 111.065 106.311 104.96 1 73.3 ? O1 2PM 601 A 1 HETATM 15 C C14 2PM . . . C 3 111.269 104.913 104.736 1 73.3 ? C14 2PM 601 A 1 HETATM 16 C C15 2PM . . . C 3 109.842 104.253 104.711 1 73.3 ? C15 2PM 601 A 1 HETATM 17 N N1 2PM . . . C 3 109.898 102.745 104.813 1 73.3 ? N1 2PM 601 A 1 HETATM 18 C C16 2PM . . . C 3 108.496 102.235 105 1 73.3 ? C16 2PM 601 A 1 HETATM 19 C C17 2PM . . . C 3 110.704 102.304 105.989 1 73.3 ? C17 2PM 601 A 1 HETATM 20 H H1 2PM . . . C 3 112.806 108.808 109.609 1 73.3 ? H1 2PM 601 A 1 HETATM 21 H H2 2PM . . . C 3 113.674 110.462 108.242 1 73.3 ? H2 2PM 601 A 1 HETATM 22 H H3 2PM . . . C 3 113.174 110.439 105.984 1 73.3 ? H3 2PM 601 A 1 HETATM 23 H H4 2PM . . . C 3 111.83 108.797 105.087 1 73.3 ? H4 2PM 601 A 1 HETATM 24 H H6 2PM . . . C 3 111.458 107.151 108.744 1 73.3 ? H6 2PM 601 A 1 HETATM 25 H H7 2PM . . . C 3 110.608 105.936 106.866 1 73.3 ? H7 2PM 601 A 1 HETATM 26 H H9 2PM . . . C 3 109.447 108.393 104.497 1 73.3 ? H9 2PM 601 A 1 HETATM 27 H H10 2PM . . . C 3 107.268 109.127 104.314 1 73.3 ? H10 2PM 601 A 1 HETATM 28 H H11 2PM . . . C 3 105.646 108.39 105.791 1 73.3 ? H11 2PM 601 A 1 HETATM 29 H H12 2PM . . . C 3 106.226 106.9 107.466 1 73.3 ? H12 2PM 601 A 1 HETATM 30 H H13 2PM . . . C 3 108.396 106.15 107.673 1 73.3 ? H13 2PM 601 A 1 HETATM 31 H H141 2PM . . . C 3 111.823 104.518 105.426 1 73.3 ? H141 2PM 601 A 1 HETATM 32 H H142 2PM . . . C 3 111.727 104.784 103.895 1 73.3 ? H142 2PM 601 A 1 HETATM 33 H H151 2PM . . . C 3 109.394 104.505 103.888 1 73.3 ? H151 2PM 601 A 1 HETATM 34 H H152 2PM . . . C 3 109.292 104.635 105.4 1 73.3 ? H152 2PM 601 A 1 HETATM 35 H H161 2PM . . . C 3 107.982 102.677 105.696 1 73.3 ? H161 2PM 601 A 1 HETATM 36 H H162 2PM . . . C 3 107.997 102.326 104.177 1 73.3 ? H162 2PM 601 A 1 HETATM 37 H H163 2PM . . . C 3 108.461 101.294 105.217 1 73.3 ? H163 2PM 601 A 1 HETATM 38 H H171 2PM . . . C 3 110.38 101.466 106.341 1 73.3 ? H171 2PM 601 A 1 HETATM 39 H H172 2PM . . . C 3 110.717 102.917 106.742 1 73.3 ? H172 2PM 601 A 1 HETATM 40 H H173 2PM . . . C 3 111.625 102.143 105.734 1 73.3 ? H173 2PM 601 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #