data_8ET8 # _model_server_result.job_id B8cIDFIHpB2orMTxmc5-PA _model_server_result.datetime_utc '2025-02-05 07:52:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8et8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8ET8 # _exptl.entry_id 8ET8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 454.602 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-(3,4-dimethoxyphenyl)-5-{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino}-2-(propan-2-yl)pentanenitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ET8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ET8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 534 NAG 2 n B NAG 2 B 2 NAG A 535 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 121 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 62 A CYS 62 1_555 A SG CYS 102 A CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 88 A CYS 88 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? covale ? covale1 A ND2 ASN 71 A ASN 71 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C27 H38 N2 O4' _chem_comp.formula_weight 454.602 _chem_comp.id 4YH _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-(3,4-dimethoxyphenyl)-5-{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino}-2-(propan-2-yl)pentanenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 O20 4YH sing 1 n n O20 C7 4YH sing 2 n n C7 C12 4YH doub 3 n y C7 C10 4YH sing 4 n y C12 C17 4YH sing 5 n y O24 C10 4YH sing 6 n n O24 C33 4YH sing 7 n n C10 C14 4YH doub 8 n y C17 C21 4YH sing 9 n n C17 C18 4YH doub 10 n y C21 C16 4YH sing 11 n n C16 N8 4YH sing 12 n n C14 C18 4YH sing 13 n y C27 N8 4YH sing 14 n n N8 C25 4YH sing 15 n n N4 C3 4YH trip 16 n n C30 O19 4YH sing 17 n n C25 C26 4YH sing 18 n n C3 C1 4YH sing 19 n n C22 C26 4YH sing 20 n n C22 C1 4YH sing 21 n n O19 C6 4YH sing 22 n n C5 C6 4YH doub 23 n y C5 C2 4YH sing 24 n y C1 C2 4YH sing 25 n n C1 C15 4YH sing 26 n n C6 C9 4YH sing 27 n y C2 C11 4YH doub 28 n y C29 C15 4YH sing 29 n n C15 C28 4YH sing 30 n n C9 O23 4YH sing 31 n n C9 C13 4YH doub 32 n y C11 C13 4YH sing 33 n y O23 C32 4YH sing 34 n n C30 H1 4YH sing 35 n n C30 H2 4YH sing 36 n n C30 H3 4YH sing 37 n n C5 H4 4YH sing 38 n n C32 H5 4YH sing 39 n n C32 H6 4YH sing 40 n n C32 H7 4YH sing 41 n n C13 H8 4YH sing 42 n n C11 H9 4YH sing 43 n n C15 H10 4YH sing 44 n n C29 H11 4YH sing 45 n n C29 H12 4YH sing 46 n n C29 H13 4YH sing 47 n n C28 H14 4YH sing 48 n n C28 H15 4YH sing 49 n n C28 H16 4YH sing 50 n n C22 H17 4YH sing 51 n n C22 H18 4YH sing 52 n n C26 H19 4YH sing 53 n n C26 H20 4YH sing 54 n n C25 H21 4YH sing 55 n n C25 H22 4YH sing 56 n n C27 H24 4YH sing 57 n n C27 H25 4YH sing 58 n n C27 H26 4YH sing 59 n n C16 H27 4YH sing 60 n n C16 H28 4YH sing 61 n n C21 H29 4YH sing 62 n n C21 H30 4YH sing 63 n n C12 H31 4YH sing 64 n n C18 H32 4YH sing 65 n n C14 H33 4YH sing 66 n n C33 H34 4YH sing 67 n n C33 H35 4YH sing 68 n n C33 H36 4YH sing 69 n n C31 H37 4YH sing 70 n n C31 H38 4YH sing 71 n n C31 H39 4YH sing 72 n n # _atom_sites.entry_id 8ET8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 4YH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 536 _pdbx_nonpoly_scheme.pdb_mon_id 4YH _pdbx_nonpoly_scheme.auth_mon_id VPM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C30 4YH . . . C 3 117.6 117.663 111.563 1 40.51 ? C30 4YH 601 A 1 HETATM 2 O O19 4YH . . . C 3 118.772 117.428 110.839 1 40.51 ? O19 4YH 601 A 1 HETATM 3 C C6 4YH . . . C 3 119.465 116.269 111.129 1 40.51 ? C6 4YH 601 A 1 HETATM 4 C C5 4YH . . . C 3 118.783 115.103 111.265 1 40.51 ? C5 4YH 601 A 1 HETATM 5 C C9 4YH . . . C 3 120.814 116.302 111.265 1 40.51 ? C9 4YH 601 A 1 HETATM 6 O O23 4YH . . . C 3 121.518 117.473 111.1 1 40.51 ? O23 4YH 601 A 1 HETATM 7 C C32 4YH . . . C 3 122.485 117.828 112.034 1 40.51 ? C32 4YH 601 A 1 HETATM 8 C C13 4YH . . . C 3 121.488 115.158 111.53 1 40.51 ? C13 4YH 601 A 1 HETATM 9 C C11 4YH . . . C 3 120.806 113.989 111.669 1 40.51 ? C11 4YH 601 A 1 HETATM 10 C C2 4YH . . . C 3 119.439 113.942 111.549 1 40.51 ? C2 4YH 601 A 1 HETATM 11 C C1 4YH . . . C 3 118.67 112.661 111.701 1 40.51 ? C1 4YH 601 A 1 HETATM 12 C C15 4YH . . . C 3 118.101 112.509 113.1 1 40.51 ? C15 4YH 601 A 1 HETATM 13 C C29 4YH . . . C 3 119.066 112.922 114.189 1 40.51 ? C29 4YH 601 A 1 HETATM 14 C C28 4YH . . . C 3 116.82 113.253 113.376 1 40.51 ? C28 4YH 601 A 1 HETATM 15 C C3 4YH . . . C 3 119.566 111.497 111.489 1 40.51 ? C3 4YH 601 A 1 HETATM 16 N N4 4YH . . . C 3 120.184 110.598 111.302 1 40.51 ? N4 4YH 601 A 1 HETATM 17 C C22 4YH . . . C 3 117.707 112.51 110.539 1 40.51 ? C22 4YH 601 A 1 HETATM 18 C C26 4YH . . . C 3 117.122 111.117 110.304 1 40.51 ? C26 4YH 601 A 1 HETATM 19 C C25 4YH . . . C 3 115.607 111.206 110.11 1 40.51 ? C25 4YH 601 A 1 HETATM 20 N N8 4YH . . . C 3 114.94 109.919 110.181 1 40.51 ? N8 4YH 601 A 1 HETATM 21 C C27 4YH . . . C 3 115.227 109.166 111.386 1 40.51 ? C27 4YH 601 A 1 HETATM 22 C C16 4YH . . . C 3 113.504 110.079 110.029 1 40.51 ? C16 4YH 601 A 1 HETATM 23 C C21 4YH . . . C 3 112.866 110.918 111.157 1 40.51 ? C21 4YH 601 A 1 HETATM 24 C C17 4YH . . . C 3 111.44 110.662 111.643 1 40.51 ? C17 4YH 601 A 1 HETATM 25 C C12 4YH . . . C 3 110.831 109.44 111.59 1 40.51 ? C12 4YH 601 A 1 HETATM 26 C C18 4YH . . . C 3 110.759 111.745 112.147 1 40.51 ? C18 4YH 601 A 1 HETATM 27 C C14 4YH . . . C 3 109.475 111.628 112.59 1 40.51 ? C14 4YH 601 A 1 HETATM 28 C C10 4YH . . . C 3 108.863 110.417 112.532 1 40.51 ? C10 4YH 601 A 1 HETATM 29 O O24 4YH . . . C 3 107.548 110.313 112.981 1 40.51 ? O24 4YH 601 A 1 HETATM 30 C C33 4YH . . . C 3 106.579 110.802 112.104 1 40.51 ? C33 4YH 601 A 1 HETATM 31 C C7 4YH . . . C 3 109.548 109.328 112.04 1 40.51 ? C7 4YH 601 A 1 HETATM 32 O O20 4YH . . . C 3 108.947 108.082 111.956 1 40.51 ? O20 4YH 601 A 1 HETATM 33 C C31 4YH . . . C 3 109.189 107.232 113.035 1 40.51 ? C31 4YH 601 A 1 HETATM 34 H H1 4YH . . . C 3 117.425 118.717 111.701 1 40.51 ? H1 4YH 601 A 1 HETATM 35 H H2 4YH . . . C 3 117.655 117.201 112.545 1 40.51 ? H2 4YH 601 A 1 HETATM 36 H H3 4YH . . . C 3 116.765 117.257 111 1 40.51 ? H3 4YH 601 A 1 HETATM 37 H H4 4YH . . . C 3 117.712 115.114 111.159 1 40.51 ? H4 4YH 601 A 1 HETATM 38 H H5 4YH . . . C 3 122.285 117.359 112.995 1 40.51 ? H5 4YH 601 A 1 HETATM 39 H H6 4YH . . . C 3 123.461 117.527 111.669 1 40.51 ? H6 4YH 601 A 1 HETATM 40 H H7 4YH . . . C 3 122.472 118.909 112.161 1 40.51 ? H7 4YH 601 A 1 HETATM 41 H H8 4YH . . . C 3 122.567 115.152 111.635 1 40.51 ? H8 4YH 601 A 1 HETATM 42 H H9 4YH . . . C 3 121.41 113.123 111.902 1 40.51 ? H9 4YH 601 A 1 HETATM 43 H H10 4YH . . . C 3 117.895 111.456 113.254 1 40.51 ? H10 4YH 601 A 1 HETATM 44 H H11 4YH . . . C 3 119.13 114.004 114.271 1 40.51 ? H11 4YH 601 A 1 HETATM 45 H H12 4YH . . . C 3 120.052 112.513 113.996 1 40.51 ? H12 4YH 601 A 1 HETATM 46 H H13 4YH . . . C 3 118.721 112.523 115.139 1 40.51 ? H13 4YH 601 A 1 HETATM 47 H H14 4YH . . . C 3 116.949 114.325 113.26 1 40.51 ? H14 4YH 601 A 1 HETATM 48 H H15 4YH . . . C 3 116.514 113.054 114.399 1 40.51 ? H15 4YH 601 A 1 HETATM 49 H H16 4YH . . . C 3 116.038 112.89 112.728 1 40.51 ? H16 4YH 601 A 1 HETATM 50 H H17 4YH . . . C 3 118.27 112.75 109.644 1 40.51 ? H17 4YH 601 A 1 HETATM 51 H H18 4YH . . . C 3 116.892 113.215 110.59 1 40.51 ? H18 4YH 601 A 1 HETATM 52 H H19 4YH . . . C 3 117.552 110.716 109.391 1 40.51 ? H19 4YH 601 A 1 HETATM 53 H H20 4YH . . . C 3 117.366 110.452 111.114 1 40.51 ? H20 4YH 601 A 1 HETATM 54 H H21 4YH . . . C 3 115.431 111.64 109.13 1 40.51 ? H21 4YH 601 A 1 HETATM 55 H H22 4YH . . . C 3 115.216 111.878 110.855 1 40.51 ? H22 4YH 601 A 1 HETATM 56 H H24 4YH . . . C 3 116.02 108.455 111.198 1 40.51 ? H24 4YH 601 A 1 HETATM 57 H H25 4YH . . . C 3 114.355 108.649 111.744 1 40.51 ? H25 4YH 601 A 1 HETATM 58 H H26 4YH . . . C 3 115.529 109.837 112.186 1 40.51 ? H26 4YH 601 A 1 HETATM 59 H H27 4YH . . . C 3 113.052 109.1 109.933 1 40.51 ? H27 4YH 601 A 1 HETATM 60 H H28 4YH . . . C 3 113.321 110.601 109.099 1 40.51 ? H28 4YH 601 A 1 HETATM 61 H H29 4YH . . . C 3 112.807 111.889 110.684 1 40.51 ? H29 4YH 601 A 1 HETATM 62 H H30 4YH . . . C 3 113.48 110.995 112.044 1 40.51 ? H30 4YH 601 A 1 HETATM 63 H H31 4YH . . . C 3 111.326 108.564 111.203 1 40.51 ? H31 4YH 601 A 1 HETATM 64 H H32 4YH . . . C 3 111.209 112.718 112.195 1 40.51 ? H32 4YH 601 A 1 HETATM 65 H H33 4YH . . . C 3 108.949 112.49 112.979 1 40.51 ? H33 4YH 601 A 1 HETATM 66 H H34 4YH . . . C 3 105.958 111.529 112.625 1 40.51 ? H34 4YH 601 A 1 HETATM 67 H H35 4YH . . . C 3 107.048 111.275 111.247 1 40.51 ? H35 4YH 601 A 1 HETATM 68 H H36 4YH . . . C 3 105.963 109.974 111.76 1 40.51 ? H36 4YH 601 A 1 HETATM 69 H H37 4YH . . . C 3 110.063 106.619 112.838 1 40.51 ? H37 4YH 601 A 1 HETATM 70 H H38 4YH . . . C 3 108.327 106.588 113.186 1 40.51 ? H38 4YH 601 A 1 HETATM 71 H H39 4YH . . . C 3 109.342 107.832 113.918 1 40.51 ? H39 4YH 601 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 71 #