data_8ETX # _model_server_result.job_id AN7N8bTbga0xvJuI0iud4Q _model_server_result.datetime_utc '2024-10-20 20:58:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8etx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8ETX # _exptl.entry_id 8ETX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ETX _cell.length_a 70.166 _cell.length_b 150.574 _cell.length_c 55.691 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ETX _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 263 A CYS 243 1_555 A SG CYS 279 A CYS 259 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc1 A O ARG 53 A ARG 33 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc2 A O ALA 56 A ALA 36 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc3 A O PHE 59 A PHE 39 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc4 A O THR 278 A THR 258 1_555 G NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc5 A O THR 278 A THR 258 1_555 G NA NA . A NA 306 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc6 A O PRO 280 A PRO 260 1_555 G NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc7 A O PRO 280 A PRO 260 1_555 G NA NA . A NA 306 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc8 B NA NA . A NA 301 1_555 J O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc9 B NA NA . A NA 301 1_555 J O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc10 B NA NA . A NA 301 1_555 J O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc11 G NA NA . A NA 306 1_555 J O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc12 G NA NA . A NA 306 1_555 J O HOH . A HOH 634 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ETX _atom_sites.fract_transf_matrix[1][1] 0.014252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 1 NA NA . C 3 PG4 A 1 302 2 PG4 PG4 . D 4 EDO A 1 303 3 EDO EDO . E 5 SO4 A 1 304 4 SO4 SO4 . F 4 EDO A 1 305 5 EDO EDO . G 2 NA A 1 306 6 NA NA . H 5 SO4 A 1 307 7 SO4 SO4 . I 6 CL A 1 308 8 CL CL . J 7 HOH A 1 401 269 HOH HOH . J 7 HOH A 2 402 1 HOH HOH . J 7 HOH A 3 403 142 HOH HOH . J 7 HOH A 4 404 118 HOH HOH . J 7 HOH A 5 405 110 HOH HOH . J 7 HOH A 6 406 143 HOH HOH . J 7 HOH A 7 407 248 HOH HOH . J 7 HOH A 8 408 101 HOH HOH . J 7 HOH A 9 409 119 HOH HOH . J 7 HOH A 10 410 262 HOH HOH . J 7 HOH A 11 411 111 HOH HOH . J 7 HOH A 12 412 270 HOH HOH . J 7 HOH A 13 413 66 HOH HOH . J 7 HOH A 14 414 159 HOH HOH . J 7 HOH A 15 415 145 HOH HOH . J 7 HOH A 16 416 195 HOH HOH . J 7 HOH A 17 417 18 HOH HOH . J 7 HOH A 18 418 107 HOH HOH . J 7 HOH A 19 419 16 HOH HOH . J 7 HOH A 20 420 253 HOH HOH . J 7 HOH A 21 421 180 HOH HOH . J 7 HOH A 22 422 264 HOH HOH . J 7 HOH A 23 423 236 HOH HOH . J 7 HOH A 24 424 176 HOH HOH . J 7 HOH A 25 425 216 HOH HOH . J 7 HOH A 26 426 193 HOH HOH . J 7 HOH A 27 427 71 HOH HOH . J 7 HOH A 28 428 84 HOH HOH . J 7 HOH A 29 429 22 HOH HOH . J 7 HOH A 30 430 151 HOH HOH . J 7 HOH A 31 431 14 HOH HOH . J 7 HOH A 32 432 73 HOH HOH . J 7 HOH A 33 433 3 HOH HOH . J 7 HOH A 34 434 77 HOH HOH . J 7 HOH A 35 435 256 HOH HOH . J 7 HOH A 36 436 25 HOH HOH . J 7 HOH A 37 437 38 HOH HOH . J 7 HOH A 38 438 49 HOH HOH . J 7 HOH A 39 439 133 HOH HOH . J 7 HOH A 40 440 27 HOH HOH . J 7 HOH A 41 441 184 HOH HOH . J 7 HOH A 42 442 208 HOH HOH . J 7 HOH A 43 443 191 HOH HOH . J 7 HOH A 44 444 200 HOH HOH . J 7 HOH A 45 445 11 HOH HOH . J 7 HOH A 46 446 87 HOH HOH . J 7 HOH A 47 447 39 HOH HOH . J 7 HOH A 48 448 139 HOH HOH . J 7 HOH A 49 449 228 HOH HOH . J 7 HOH A 50 450 128 HOH HOH . J 7 HOH A 51 451 261 HOH HOH . J 7 HOH A 52 452 190 HOH HOH . J 7 HOH A 53 453 266 HOH HOH . J 7 HOH A 54 454 58 HOH HOH . J 7 HOH A 55 455 95 HOH HOH . J 7 HOH A 56 456 69 HOH HOH . J 7 HOH A 57 457 70 HOH HOH . J 7 HOH A 58 458 124 HOH HOH . J 7 HOH A 59 459 55 HOH HOH . J 7 HOH A 60 460 157 HOH HOH . J 7 HOH A 61 461 50 HOH HOH . J 7 HOH A 62 462 213 HOH HOH . J 7 HOH A 63 463 12 HOH HOH . J 7 HOH A 64 464 13 HOH HOH . J 7 HOH A 65 465 17 HOH HOH . J 7 HOH A 66 466 99 HOH HOH . J 7 HOH A 67 467 240 HOH HOH . J 7 HOH A 68 468 94 HOH HOH . J 7 HOH A 69 469 33 HOH HOH . J 7 HOH A 70 470 144 HOH HOH . J 7 HOH A 71 471 147 HOH HOH . J 7 HOH A 72 472 85 HOH HOH . J 7 HOH A 73 473 48 HOH HOH . J 7 HOH A 74 474 7 HOH HOH . J 7 HOH A 75 475 115 HOH HOH . J 7 HOH A 76 476 135 HOH HOH . J 7 HOH A 77 477 146 HOH HOH . J 7 HOH A 78 478 4 HOH HOH . J 7 HOH A 79 479 121 HOH HOH . J 7 HOH A 80 480 19 HOH HOH . J 7 HOH A 81 481 186 HOH HOH . J 7 HOH A 82 482 103 HOH HOH . J 7 HOH A 83 483 29 HOH HOH . J 7 HOH A 84 484 88 HOH HOH . J 7 HOH A 85 485 37 HOH HOH . J 7 HOH A 86 486 252 HOH HOH . J 7 HOH A 87 487 162 HOH HOH . J 7 HOH A 88 488 154 HOH HOH . J 7 HOH A 89 489 89 HOH HOH . J 7 HOH A 90 490 93 HOH HOH . J 7 HOH A 91 491 68 HOH HOH . J 7 HOH A 92 492 32 HOH HOH . J 7 HOH A 93 493 109 HOH HOH . J 7 HOH A 94 494 30 HOH HOH . J 7 HOH A 95 495 31 HOH HOH . J 7 HOH A 96 496 123 HOH HOH . J 7 HOH A 97 497 65 HOH HOH . J 7 HOH A 98 498 26 HOH HOH . J 7 HOH A 99 499 104 HOH HOH . J 7 HOH A 100 500 185 HOH HOH . J 7 HOH A 101 501 98 HOH HOH . J 7 HOH A 102 502 188 HOH HOH . J 7 HOH A 103 503 15 HOH HOH . J 7 HOH A 104 504 131 HOH HOH . J 7 HOH A 105 505 78 HOH HOH . J 7 HOH A 106 506 255 HOH HOH . J 7 HOH A 107 507 91 HOH HOH . J 7 HOH A 108 508 156 HOH HOH . J 7 HOH A 109 509 28 HOH HOH . J 7 HOH A 110 510 194 HOH HOH . J 7 HOH A 111 511 9 HOH HOH . J 7 HOH A 112 512 10 HOH HOH . J 7 HOH A 113 513 114 HOH HOH . J 7 HOH A 114 514 182 HOH HOH . J 7 HOH A 115 515 230 HOH HOH . J 7 HOH A 116 516 251 HOH HOH . J 7 HOH A 117 517 196 HOH HOH . J 7 HOH A 118 518 54 HOH HOH . J 7 HOH A 119 519 106 HOH HOH . J 7 HOH A 120 520 172 HOH HOH . J 7 HOH A 121 521 24 HOH HOH . J 7 HOH A 122 522 8 HOH HOH . J 7 HOH A 123 523 152 HOH HOH . J 7 HOH A 124 524 267 HOH HOH . J 7 HOH A 125 525 254 HOH HOH . J 7 HOH A 126 526 117 HOH HOH . J 7 HOH A 127 527 134 HOH HOH . J 7 HOH A 128 528 44 HOH HOH . J 7 HOH A 129 529 220 HOH HOH . J 7 HOH A 130 530 6 HOH HOH . J 7 HOH A 131 531 127 HOH HOH . J 7 HOH A 132 532 47 HOH HOH . J 7 HOH A 133 533 35 HOH HOH . J 7 HOH A 134 534 166 HOH HOH . J 7 HOH A 135 535 137 HOH HOH . J 7 HOH A 136 536 82 HOH HOH . J 7 HOH A 137 537 20 HOH HOH . J 7 HOH A 138 538 2 HOH HOH . J 7 HOH A 139 539 81 HOH HOH . J 7 HOH A 140 540 148 HOH HOH . J 7 HOH A 141 541 138 HOH HOH . J 7 HOH A 142 542 277 HOH HOH . J 7 HOH A 143 543 36 HOH HOH . J 7 HOH A 144 544 108 HOH HOH . J 7 HOH A 145 545 149 HOH HOH . J 7 HOH A 146 546 221 HOH HOH . J 7 HOH A 147 547 164 HOH HOH . J 7 HOH A 148 548 57 HOH HOH . J 7 HOH A 149 549 61 HOH HOH . J 7 HOH A 150 550 72 HOH HOH . J 7 HOH A 151 551 132 HOH HOH . J 7 HOH A 152 552 125 HOH HOH . J 7 HOH A 153 553 53 HOH HOH . J 7 HOH A 154 554 42 HOH HOH . J 7 HOH A 155 555 187 HOH HOH . J 7 HOH A 156 556 189 HOH HOH . J 7 HOH A 157 557 5 HOH HOH . J 7 HOH A 158 558 86 HOH HOH . J 7 HOH A 159 559 41 HOH HOH . J 7 HOH A 160 560 141 HOH HOH . J 7 HOH A 161 561 52 HOH HOH . J 7 HOH A 162 562 201 HOH HOH . J 7 HOH A 163 563 112 HOH HOH . J 7 HOH A 164 564 181 HOH HOH . J 7 HOH A 165 565 64 HOH HOH . J 7 HOH A 166 566 260 HOH HOH . J 7 HOH A 167 567 158 HOH HOH . J 7 HOH A 168 568 140 HOH HOH . J 7 HOH A 169 569 265 HOH HOH . J 7 HOH A 170 570 105 HOH HOH . J 7 HOH A 171 571 268 HOH HOH . J 7 HOH A 172 572 231 HOH HOH . J 7 HOH A 173 573 218 HOH HOH . J 7 HOH A 174 574 160 HOH HOH . J 7 HOH A 175 575 23 HOH HOH . J 7 HOH A 176 576 206 HOH HOH . J 7 HOH A 177 577 62 HOH HOH . J 7 HOH A 178 578 165 HOH HOH . J 7 HOH A 179 579 170 HOH HOH . J 7 HOH A 180 580 214 HOH HOH . J 7 HOH A 181 581 46 HOH HOH . J 7 HOH A 182 582 80 HOH HOH . J 7 HOH A 183 583 192 HOH HOH . J 7 HOH A 184 584 90 HOH HOH . J 7 HOH A 185 585 34 HOH HOH . J 7 HOH A 186 586 43 HOH HOH . J 7 HOH A 187 587 136 HOH HOH . J 7 HOH A 188 588 120 HOH HOH . J 7 HOH A 189 589 219 HOH HOH . J 7 HOH A 190 590 179 HOH HOH . J 7 HOH A 191 591 56 HOH HOH . J 7 HOH A 192 592 67 HOH HOH . J 7 HOH A 193 593 169 HOH HOH . J 7 HOH A 194 594 51 HOH HOH . J 7 HOH A 195 595 225 HOH HOH . J 7 HOH A 196 596 246 HOH HOH . J 7 HOH A 197 597 21 HOH HOH . J 7 HOH A 198 598 155 HOH HOH . J 7 HOH A 199 599 76 HOH HOH . J 7 HOH A 200 600 217 HOH HOH . J 7 HOH A 201 601 247 HOH HOH . J 7 HOH A 202 602 210 HOH HOH . J 7 HOH A 203 603 45 HOH HOH . J 7 HOH A 204 604 74 HOH HOH . J 7 HOH A 205 605 40 HOH HOH . J 7 HOH A 206 606 215 HOH HOH . J 7 HOH A 207 607 202 HOH HOH . J 7 HOH A 208 608 97 HOH HOH . J 7 HOH A 209 609 212 HOH HOH . J 7 HOH A 210 610 207 HOH HOH . J 7 HOH A 211 611 241 HOH HOH . J 7 HOH A 212 612 167 HOH HOH . J 7 HOH A 213 613 205 HOH HOH . J 7 HOH A 214 614 198 HOH HOH . J 7 HOH A 215 615 259 HOH HOH . J 7 HOH A 216 616 272 HOH HOH . J 7 HOH A 217 617 203 HOH HOH . J 7 HOH A 218 618 226 HOH HOH . J 7 HOH A 219 619 60 HOH HOH . J 7 HOH A 220 620 197 HOH HOH . J 7 HOH A 221 621 211 HOH HOH . J 7 HOH A 222 622 153 HOH HOH . J 7 HOH A 223 623 75 HOH HOH . J 7 HOH A 224 624 278 HOH HOH . J 7 HOH A 225 625 83 HOH HOH . J 7 HOH A 226 626 237 HOH HOH . J 7 HOH A 227 627 209 HOH HOH . J 7 HOH A 228 628 96 HOH HOH . J 7 HOH A 229 629 59 HOH HOH . J 7 HOH A 230 630 229 HOH HOH . J 7 HOH A 231 631 242 HOH HOH . J 7 HOH A 232 632 223 HOH HOH . J 7 HOH A 233 633 126 HOH HOH . J 7 HOH A 234 634 171 HOH HOH . J 7 HOH A 235 635 276 HOH HOH . J 7 HOH A 236 636 232 HOH HOH . J 7 HOH A 237 637 161 HOH HOH . J 7 HOH A 238 638 79 HOH HOH . J 7 HOH A 239 639 250 HOH HOH . J 7 HOH A 240 640 258 HOH HOH . J 7 HOH A 241 641 257 HOH HOH . J 7 HOH A 242 642 243 HOH HOH . J 7 HOH A 243 643 204 HOH HOH . J 7 HOH A 244 644 178 HOH HOH . J 7 HOH A 245 645 273 HOH HOH . J 7 HOH A 246 646 235 HOH HOH . J 7 HOH A 247 647 263 HOH HOH . J 7 HOH A 248 648 102 HOH HOH . J 7 HOH A 249 649 116 HOH HOH . J 7 HOH A 250 650 130 HOH HOH . J 7 HOH A 251 651 173 HOH HOH . J 7 HOH A 252 652 245 HOH HOH . J 7 HOH A 253 653 174 HOH HOH . J 7 HOH A 254 654 234 HOH HOH . J 7 HOH A 255 655 227 HOH HOH . J 7 HOH A 256 656 92 HOH HOH . J 7 HOH A 257 657 168 HOH HOH . J 7 HOH A 258 658 238 HOH HOH . J 7 HOH A 259 659 239 HOH HOH . J 7 HOH A 260 660 122 HOH HOH . J 7 HOH A 261 661 224 HOH HOH . J 7 HOH A 262 662 183 HOH HOH . J 7 HOH A 263 663 100 HOH HOH . J 7 HOH A 264 664 244 HOH HOH . J 7 HOH A 265 665 275 HOH HOH . J 7 HOH A 266 666 129 HOH HOH . J 7 HOH A 267 667 113 HOH HOH . J 7 HOH A 268 668 150 HOH HOH . J 7 HOH A 269 669 177 HOH HOH . J 7 HOH A 270 670 274 HOH HOH . J 7 HOH A 271 671 233 HOH HOH . J 7 HOH A 272 672 163 HOH HOH . J 7 HOH A 273 673 199 HOH HOH . J 7 HOH A 274 674 271 HOH HOH . J 7 HOH A 275 675 249 HOH HOH . J 7 HOH A 276 676 175 HOH HOH . J 7 HOH A 277 677 63 HOH HOH . J 7 HOH A 278 678 222 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.062 _atom_site.Cartn_y 27.801 _atom_site.Cartn_z 15.391 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #