data_8EUA # _model_server_result.job_id -sM65S28kdnL9Snf8sMP2A _model_server_result.datetime_utc '2024-11-21 09:13:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eua # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8EUA # _exptl.entry_id 8EUA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 475.536 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 4-{2-[3-(2-{[(1R)-1-(naphthalen-1-yl)ethyl]carbamoyl}phenyl)propanoyl]hydrazinyl}-4-oxobutanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EUA _cell.length_a 112.33 _cell.length_b 112.33 _cell.length_c 217.33 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EUA _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 113 A CYS 111 1_555 B C1 WUK . A WUK 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc1 A OD1 ASP 64 A ASP 62 1_555 E ZN ZN . A ZN 404 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc2 A OD2 ASP 64 A ASP 62 1_555 E ZN ZN . A ZN 404 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 A ND1 HIS 75 A HIS 73 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc4 A OD1 ASP 110 A ASP 108 1_555 D ZN ZN . A ZN 403 15_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 A OD2 ASP 110 A ASP 108 1_555 D ZN ZN . A ZN 403 15_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc6 A SG CYS 191 A CYS 189 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc7 A SG CYS 194 A CYS 192 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc8 A SG CYS 226 A CYS 224 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc9 A SG CYS 228 A CYS 226 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc10 A SG CYS 272 A CYS 270 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc11 E ZN ZN . A ZN 404 1_555 G O HOH . A HOH 503 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? # _chem_comp.formula 'C27 H29 N3 O5' _chem_comp.formula_weight 475.536 _chem_comp.id WUK _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 4-{2-[3-(2-{[(1R)-1-(naphthalen-1-yl)ethyl]carbamoyl}phenyl)propanoyl]hydrazinyl}-4-oxobutanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C26 WUK doub 380 n y C27 C28 WUK sing 381 n y C26 C25 WUK sing 382 n y C28 C29 WUK doub 383 n y C25 C24 WUK doub 384 n y C25 C30 WUK sing 385 n y C29 C30 WUK sing 386 n y C24 C23 WUK sing 387 n y C30 C21 WUK doub 388 n y O5 C18 WUK doub 389 n n C15 C16 WUK doub 390 n y C15 C14 WUK sing 391 n y C16 C17 WUK sing 392 n y C23 C22 WUK doub 393 n y C14 C13 WUK doub 394 n y C21 C22 WUK sing 395 n y C21 C19 WUK sing 396 n n C17 C18 WUK sing 397 n n C17 C12 WUK doub 398 n y C18 N3 WUK sing 399 n n O4 C9 WUK doub 400 n n C13 C12 WUK sing 401 n y C12 C11 WUK sing 402 n n C11 C10 WUK sing 403 n n C10 C9 WUK sing 404 n n C19 N3 WUK sing 405 n n C19 C20 WUK sing 406 n n C9 N2 WUK sing 407 n n O2 C4 WUK sing 408 n n O2 C3 WUK sing 409 n n C2 C3 WUK sing 410 n n C2 C1 WUK sing 411 n n N2 N1 WUK sing 412 n n N1 C8 WUK sing 413 n n C3 O1 WUK doub 414 n n C8 O3 WUK doub 415 n n C8 C1 WUK sing 416 n n C1 H1 WUK sing 417 n n C1 H2 WUK sing 418 n n C4 H3 WUK sing 419 n n C4 H4 WUK sing 420 n n C4 H5 WUK sing 421 n n C13 H6 WUK sing 422 n n C15 H7 WUK sing 423 n n C19 H8 WUK sing 424 n n C20 H9 WUK sing 425 n n C20 H10 WUK sing 426 n n C20 H11 WUK sing 427 n n C22 H12 WUK sing 428 n n C23 H13 WUK sing 429 n n C24 H14 WUK sing 430 n n C26 H15 WUK sing 431 n n C27 H16 WUK sing 432 n n C28 H17 WUK sing 433 n n N3 H18 WUK sing 434 n n C29 H19 WUK sing 435 n n C16 H20 WUK sing 436 n n C14 H21 WUK sing 437 n n C11 H22 WUK sing 438 n n C11 H23 WUK sing 439 n n C10 H24 WUK sing 440 n n C10 H25 WUK sing 441 n n N2 H26 WUK sing 442 n n N1 H27 WUK sing 443 n n C2 H28 WUK sing 444 n n C2 H29 WUK sing 445 n n # _atom_sites.entry_id 8EUA _atom_sites.fract_transf_matrix[1][1] 0.008902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WUK A 1 401 1 WUK BC7 . C 3 ZN A 1 402 1 ZN ZN . D 3 ZN A 1 403 2 ZN ZN . E 3 ZN A 1 404 3 ZN ZN . F 4 SO4 A 1 405 1 SO4 SO4 . G 5 HOH A 1 501 26 HOH HOH . G 5 HOH A 2 502 39 HOH HOH . G 5 HOH A 3 503 27 HOH HOH . G 5 HOH A 4 504 25 HOH HOH . G 5 HOH A 5 505 31 HOH HOH . G 5 HOH A 6 506 20 HOH HOH . G 5 HOH A 7 507 8 HOH HOH . G 5 HOH A 8 508 15 HOH HOH . G 5 HOH A 9 509 6 HOH HOH . G 5 HOH A 10 510 37 HOH HOH . G 5 HOH A 11 511 7 HOH HOH . G 5 HOH A 12 512 2 HOH HOH . G 5 HOH A 13 513 38 HOH HOH . G 5 HOH A 14 514 12 HOH HOH . G 5 HOH A 15 515 29 HOH HOH . G 5 HOH A 16 516 19 HOH HOH . G 5 HOH A 17 517 17 HOH HOH . G 5 HOH A 18 518 14 HOH HOH . G 5 HOH A 19 519 23 HOH HOH . G 5 HOH A 20 520 9 HOH HOH . G 5 HOH A 21 521 13 HOH HOH . G 5 HOH A 22 522 1 HOH HOH . G 5 HOH A 23 523 33 HOH HOH . G 5 HOH A 24 524 5 HOH HOH . G 5 HOH A 25 525 24 HOH HOH . G 5 HOH A 26 526 41 HOH HOH . G 5 HOH A 27 527 40 HOH HOH . G 5 HOH A 28 528 4 HOH HOH . G 5 HOH A 29 529 18 HOH HOH . G 5 HOH A 30 530 35 HOH HOH . G 5 HOH A 31 531 10 HOH HOH . G 5 HOH A 32 532 21 HOH HOH . G 5 HOH A 33 533 28 HOH HOH . G 5 HOH A 34 534 11 HOH HOH . G 5 HOH A 35 535 36 HOH HOH . G 5 HOH A 36 536 34 HOH HOH . G 5 HOH A 37 537 30 HOH HOH . G 5 HOH A 38 538 16 HOH HOH . G 5 HOH A 39 539 32 HOH HOH . G 5 HOH A 40 540 22 HOH HOH . G 5 HOH A 41 541 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WUK . . . B 2 15.279 25.414 3.402 1 107.64 ? C1 WUK 401 A 1 HETATM 2 C C4 WUK . . . B 2 19.477 27.293 2.41 1 137.27 ? C4 WUK 401 A 1 HETATM 3 C C8 WUK . . . B 2 14.091 24.528 3.032 1 86.29 ? C8 WUK 401 A 1 HETATM 4 C C9 WUK . . . B 2 11.548 24.589 0.992 1 68.46 ? C9 WUK 401 A 1 HETATM 5 C C12 WUK . . . B 2 7.872 23.853 0.19 1 65.8 ? C12 WUK 401 A 1 HETATM 6 C C13 WUK . . . B 2 7.834 22.462 0.163 1 64.06 ? C13 WUK 401 A 1 HETATM 7 C C15 WUK . . . B 2 5.404 22.494 -0.169 1 69.15 ? C15 WUK 401 A 1 HETATM 8 C C17 WUK . . . B 2 6.654 24.52 0.027 1 71.88 ? C17 WUK 401 A 1 HETATM 9 C C19 WUK . . . B 2 5.798 27.989 0.679 1 79.26 ? C19 WUK 401 A 1 HETATM 10 C C18 WUK . . . B 2 6.657 25.996 0.029 1 78.72 ? C18 WUK 401 A 1 HETATM 11 C C20 WUK . . . B 2 5.92 28.721 2.005 1 75.33 ? C20 WUK 401 A 1 HETATM 12 C C22 WUK . . . B 2 3.334 27.74 0.497 1 76.28 ? C22 WUK 401 A 1 HETATM 13 C C23 WUK . . . B 2 2.107 28.02 -0.083 1 73.62 ? C23 WUK 401 A 1 HETATM 14 C C24 WUK . . . B 2 2.058 28.845 -1.183 1 77.64 ? C24 WUK 401 A 1 HETATM 15 C C25 WUK . . . B 2 3.226 29.4 -1.711 1 80.72 ? C25 WUK 401 A 1 HETATM 16 C C26 WUK . . . B 2 3.142 30.263 -2.808 1 82.41 ? C26 WUK 401 A 1 HETATM 17 C C27 WUK . . . B 2 4.299 30.84 -3.328 1 95.49 ? C27 WUK 401 A 1 HETATM 18 C C28 WUK . . . B 2 5.551 30.576 -2.765 1 92.3 ? C28 WUK 401 A 1 HETATM 19 C C21 WUK . . . B 2 4.507 28.289 -0.008 1 76.52 ? C21 WUK 401 A 1 HETATM 20 C C30 WUK . . . B 2 4.465 29.122 -1.134 1 79.12 ? C30 WUK 401 A 1 HETATM 21 N N3 WUK . . . B 2 5.98 26.58 0.912 1 76.76 ? N3 WUK 401 A 1 HETATM 22 O O2 WUK . . . B 2 18.434 26.501 1.812 1 142.01 ? O2 WUK 401 A 1 HETATM 23 O O5 WUK . . . B 2 7.32 26.567 -0.847 1 78.35 ? O5 WUK 401 A 1 HETATM 24 C C29 WUK . . . B 2 5.623 29.722 -1.673 1 86.05 ? C29 WUK 401 A 1 HETATM 25 C C16 WUK . . . B 2 5.427 23.88 -0.153 1 68.03 ? C16 WUK 401 A 1 HETATM 26 C C14 WUK . . . B 2 6.613 21.803 -0.034 1 69.46 ? C14 WUK 401 A 1 HETATM 27 C C11 WUK . . . B 2 9.157 24.657 0.394 1 62.2 ? C11 WUK 401 A 1 HETATM 28 C C10 WUK . . . B 2 10.352 23.762 0.623 1 66.3 ? C10 WUK 401 A 1 HETATM 29 O O4 WUK . . . B 2 12.118 25.22 0.12 1 69.47 ? O4 WUK 401 A 1 HETATM 30 N N2 WUK . . . B 2 11.905 24.539 2.202 1 63 ? N2 WUK 401 A 1 HETATM 31 N N1 WUK . . . B 2 13.074 25.191 2.52 1 68.22 ? N1 WUK 401 A 1 HETATM 32 O O3 WUK . . . B 2 14.089 23.32 3.222 1 81.23 ? O3 WUK 401 A 1 HETATM 33 C C2 WUK . . . B 2 16.125 25.371 2.121 1 90.44 ? C2 WUK 401 A 1 HETATM 34 C C3 WUK . . . B 2 17.553 25.58 2.543 1 108.15 ? C3 WUK 401 A 1 HETATM 35 O O1 WUK . . . B 2 17.967 24.956 3.507 1 92.06 ? O1 WUK 401 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 53 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 1180 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 35 #