data_8EUH # _model_server_result.job_id '_VN8hB01uMkrt70Hhk3W1Q' _model_server_result.datetime_utc '2024-11-12 23:13:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8euh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 8EUH # _exptl.entry_id 8EUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.249 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-TERPINEOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8EUH _cell.length_a 68.12 _cell.length_b 68.12 _cell.length_c 455.406 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 397 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 377 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.412 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H18 O' _chem_comp.formula_weight 154.249 _chem_comp.id XGE _chem_comp.mon_nstd_flag . _chem_comp.name alpha-TERPINEOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-[(1S)-4-methylcyclohex-3-en-1-yl]propan-2-ol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C08 XGE sing 467 n n C10 C08 XGE sing 468 n n C08 C09 XGE sing 469 n n C08 C05 XGE sing 470 n n C04 C05 XGE sing 471 n n C04 C03 XGE sing 472 n n C05 C06 XGE sing 473 n n C03 C02 XGE sing 474 n n C06 C07 XGE sing 475 n n C02 C07 XGE doub 476 n n C02 C01 XGE sing 477 n n C01 H1 XGE sing 478 n n C01 H2 XGE sing 479 n n C01 H3 XGE sing 480 n n C03 H4 XGE sing 481 n n C03 H5 XGE sing 482 n n C04 H6 XGE sing 483 n n C04 H7 XGE sing 484 n n C05 H8 XGE sing 485 n n C06 H9 XGE sing 486 n n C06 H10 XGE sing 487 n n C07 H11 XGE sing 488 n n C09 H12 XGE sing 489 n n C09 H13 XGE sing 490 n n C09 H14 XGE sing 491 n n C10 H15 XGE sing 492 n n C10 H16 XGE sing 493 n n C10 H17 XGE sing 494 n n O11 H18 XGE sing 495 n n # _atom_sites.entry_id 8EUH _atom_sites.fract_transf_matrix[1][1] 0.01468 _atom_sites.fract_transf_matrix[1][2] 0.008475 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 XGE A 1 502 502 XGE XGE . D 3 XGE A 1 503 601 XGE XGE . E 4 EDO A 1 504 701 EDO EDO . F 4 EDO A 1 505 801 EDO EDO . G 4 EDO A 1 506 1001 EDO EDO . H 4 EDO A 1 507 1201 EDO EDO . I 4 EDO A 1 508 1301 EDO EDO . J 5 HOH A 1 601 146 HOH HOH . J 5 HOH A 2 602 101 HOH HOH . J 5 HOH A 3 603 8 HOH HOH . J 5 HOH A 4 604 49 HOH HOH . J 5 HOH A 5 605 266 HOH HOH . J 5 HOH A 6 606 255 HOH HOH . J 5 HOH A 7 607 47 HOH HOH . J 5 HOH A 8 608 110 HOH HOH . J 5 HOH A 9 609 3 HOH HOH . J 5 HOH A 10 610 240 HOH HOH . J 5 HOH A 11 611 160 HOH HOH . J 5 HOH A 12 612 78 HOH HOH . J 5 HOH A 13 613 85 HOH HOH . J 5 HOH A 14 614 1 HOH HOH . J 5 HOH A 15 615 50 HOH HOH . J 5 HOH A 16 616 292 HOH HOH . J 5 HOH A 17 617 82 HOH HOH . J 5 HOH A 18 618 38 HOH HOH . J 5 HOH A 19 619 34 HOH HOH . J 5 HOH A 20 620 55 HOH HOH . J 5 HOH A 21 621 185 HOH HOH . J 5 HOH A 22 622 92 HOH HOH . J 5 HOH A 23 623 288 HOH HOH . J 5 HOH A 24 624 136 HOH HOH . J 5 HOH A 25 625 246 HOH HOH . J 5 HOH A 26 626 203 HOH HOH . J 5 HOH A 27 627 53 HOH HOH . J 5 HOH A 28 628 83 HOH HOH . J 5 HOH A 29 629 256 HOH HOH . J 5 HOH A 30 630 61 HOH HOH . J 5 HOH A 31 631 107 HOH HOH . J 5 HOH A 32 632 73 HOH HOH . J 5 HOH A 33 633 27 HOH HOH . J 5 HOH A 34 634 235 HOH HOH . J 5 HOH A 35 635 20 HOH HOH . J 5 HOH A 36 636 174 HOH HOH . J 5 HOH A 37 637 105 HOH HOH . J 5 HOH A 38 638 16 HOH HOH . J 5 HOH A 39 639 2 HOH HOH . J 5 HOH A 40 640 36 HOH HOH . J 5 HOH A 41 641 21 HOH HOH . J 5 HOH A 42 642 231 HOH HOH . J 5 HOH A 43 643 22 HOH HOH . J 5 HOH A 44 644 37 HOH HOH . J 5 HOH A 45 645 284 HOH HOH . J 5 HOH A 46 646 7 HOH HOH . J 5 HOH A 47 647 176 HOH HOH . J 5 HOH A 48 648 141 HOH HOH . J 5 HOH A 49 649 114 HOH HOH . J 5 HOH A 50 650 52 HOH HOH . J 5 HOH A 51 651 109 HOH HOH . J 5 HOH A 52 652 90 HOH HOH . J 5 HOH A 53 653 171 HOH HOH . J 5 HOH A 54 654 25 HOH HOH . J 5 HOH A 55 655 29 HOH HOH . J 5 HOH A 56 656 19 HOH HOH . J 5 HOH A 57 657 226 HOH HOH . J 5 HOH A 58 658 41 HOH HOH . J 5 HOH A 59 659 48 HOH HOH . J 5 HOH A 60 660 80 HOH HOH . J 5 HOH A 61 661 6 HOH HOH . J 5 HOH A 62 662 193 HOH HOH . J 5 HOH A 63 663 168 HOH HOH . J 5 HOH A 64 664 217 HOH HOH . J 5 HOH A 65 665 227 HOH HOH . J 5 HOH A 66 666 182 HOH HOH . J 5 HOH A 67 667 56 HOH HOH . J 5 HOH A 68 668 35 HOH HOH . J 5 HOH A 69 669 58 HOH HOH . J 5 HOH A 70 670 32 HOH HOH . J 5 HOH A 71 671 11 HOH HOH . J 5 HOH A 72 672 51 HOH HOH . J 5 HOH A 73 673 44 HOH HOH . J 5 HOH A 74 674 39 HOH HOH . J 5 HOH A 75 675 121 HOH HOH . J 5 HOH A 76 676 79 HOH HOH . J 5 HOH A 77 677 26 HOH HOH . J 5 HOH A 78 678 15 HOH HOH . J 5 HOH A 79 679 12 HOH HOH . J 5 HOH A 80 680 134 HOH HOH . J 5 HOH A 81 681 169 HOH HOH . J 5 HOH A 82 682 42 HOH HOH . J 5 HOH A 83 683 23 HOH HOH . J 5 HOH A 84 684 5 HOH HOH . J 5 HOH A 85 685 219 HOH HOH . J 5 HOH A 86 686 294 HOH HOH . J 5 HOH A 87 687 199 HOH HOH . J 5 HOH A 88 688 167 HOH HOH . J 5 HOH A 89 689 125 HOH HOH . J 5 HOH A 90 690 87 HOH HOH . J 5 HOH A 91 691 229 HOH HOH . J 5 HOH A 92 692 149 HOH HOH . J 5 HOH A 93 693 59 HOH HOH . J 5 HOH A 94 694 54 HOH HOH . J 5 HOH A 95 695 216 HOH HOH . J 5 HOH A 96 696 67 HOH HOH . J 5 HOH A 97 697 31 HOH HOH . J 5 HOH A 98 698 94 HOH HOH . J 5 HOH A 99 699 108 HOH HOH . J 5 HOH A 100 700 70 HOH HOH . J 5 HOH A 101 701 13 HOH HOH . J 5 HOH A 102 702 84 HOH HOH . J 5 HOH A 103 703 40 HOH HOH . J 5 HOH A 104 704 180 HOH HOH . J 5 HOH A 105 705 100 HOH HOH . J 5 HOH A 106 706 207 HOH HOH . J 5 HOH A 107 707 223 HOH HOH . J 5 HOH A 108 708 129 HOH HOH . J 5 HOH A 109 709 287 HOH HOH . J 5 HOH A 110 710 173 HOH HOH . J 5 HOH A 111 711 60 HOH HOH . J 5 HOH A 112 712 72 HOH HOH . J 5 HOH A 113 713 69 HOH HOH . J 5 HOH A 114 714 43 HOH HOH . J 5 HOH A 115 715 161 HOH HOH . J 5 HOH A 116 716 157 HOH HOH . J 5 HOH A 117 717 71 HOH HOH . J 5 HOH A 118 718 128 HOH HOH . J 5 HOH A 119 719 88 HOH HOH . J 5 HOH A 120 720 97 HOH HOH . J 5 HOH A 121 721 24 HOH HOH . J 5 HOH A 122 722 30 HOH HOH . J 5 HOH A 123 723 63 HOH HOH . J 5 HOH A 124 724 252 HOH HOH . J 5 HOH A 125 725 28 HOH HOH . J 5 HOH A 126 726 188 HOH HOH . J 5 HOH A 127 727 122 HOH HOH . J 5 HOH A 128 728 74 HOH HOH . J 5 HOH A 129 729 57 HOH HOH . J 5 HOH A 130 730 198 HOH HOH . J 5 HOH A 131 731 17 HOH HOH . J 5 HOH A 132 732 106 HOH HOH . J 5 HOH A 133 733 91 HOH HOH . J 5 HOH A 134 734 4 HOH HOH . J 5 HOH A 135 735 18 HOH HOH . J 5 HOH A 136 736 33 HOH HOH . J 5 HOH A 137 737 99 HOH HOH . J 5 HOH A 138 738 159 HOH HOH . J 5 HOH A 139 739 81 HOH HOH . J 5 HOH A 140 740 236 HOH HOH . J 5 HOH A 141 741 9 HOH HOH . J 5 HOH A 142 742 62 HOH HOH . J 5 HOH A 143 743 113 HOH HOH . J 5 HOH A 144 744 66 HOH HOH . J 5 HOH A 145 745 286 HOH HOH . J 5 HOH A 146 746 45 HOH HOH . J 5 HOH A 147 747 242 HOH HOH . J 5 HOH A 148 748 14 HOH HOH . J 5 HOH A 149 749 162 HOH HOH . J 5 HOH A 150 750 295 HOH HOH . J 5 HOH A 151 751 98 HOH HOH . J 5 HOH A 152 752 75 HOH HOH . J 5 HOH A 153 753 46 HOH HOH . J 5 HOH A 154 754 218 HOH HOH . J 5 HOH A 155 755 10 HOH HOH . J 5 HOH A 156 756 77 HOH HOH . J 5 HOH A 157 757 153 HOH HOH . J 5 HOH A 158 758 102 HOH HOH . J 5 HOH A 159 759 111 HOH HOH . J 5 HOH A 160 760 179 HOH HOH . J 5 HOH A 161 761 135 HOH HOH . J 5 HOH A 162 762 120 HOH HOH . J 5 HOH A 163 763 237 HOH HOH . J 5 HOH A 164 764 64 HOH HOH . J 5 HOH A 165 765 293 HOH HOH . J 5 HOH A 166 766 154 HOH HOH . J 5 HOH A 167 767 148 HOH HOH . J 5 HOH A 168 768 137 HOH HOH . J 5 HOH A 169 769 127 HOH HOH . J 5 HOH A 170 770 150 HOH HOH . J 5 HOH A 171 771 212 HOH HOH . J 5 HOH A 172 772 143 HOH HOH . J 5 HOH A 173 773 244 HOH HOH . J 5 HOH A 174 774 104 HOH HOH . J 5 HOH A 175 775 200 HOH HOH . J 5 HOH A 176 776 233 HOH HOH . J 5 HOH A 177 777 156 HOH HOH . J 5 HOH A 178 778 132 HOH HOH . J 5 HOH A 179 779 195 HOH HOH . J 5 HOH A 180 780 152 HOH HOH . J 5 HOH A 181 781 224 HOH HOH . J 5 HOH A 182 782 265 HOH HOH . J 5 HOH A 183 783 183 HOH HOH . J 5 HOH A 184 784 124 HOH HOH . J 5 HOH A 185 785 272 HOH HOH . J 5 HOH A 186 786 139 HOH HOH . J 5 HOH A 187 787 103 HOH HOH . J 5 HOH A 188 788 192 HOH HOH . J 5 HOH A 189 789 249 HOH HOH . J 5 HOH A 190 790 138 HOH HOH . J 5 HOH A 191 791 158 HOH HOH . J 5 HOH A 192 792 166 HOH HOH . J 5 HOH A 193 793 263 HOH HOH . J 5 HOH A 194 794 258 HOH HOH . J 5 HOH A 195 795 181 HOH HOH . J 5 HOH A 196 796 151 HOH HOH . J 5 HOH A 197 797 220 HOH HOH . J 5 HOH A 198 798 142 HOH HOH . J 5 HOH A 199 799 194 HOH HOH . J 5 HOH A 200 800 126 HOH HOH . J 5 HOH A 201 801 95 HOH HOH . J 5 HOH A 202 802 209 HOH HOH . J 5 HOH A 203 803 165 HOH HOH . J 5 HOH A 204 804 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 XGE . A . D 3 36 24.842 85.138 0.49 34.11 ? C01 XGE 503 A 1 HETATM 2 C C01 XGE . B . D 3 34.288 25.686 86.26 0.51 60.42 ? C01 XGE 503 A 1 HETATM 3 C C02 XGE . A . D 3 35.071 25.094 86.316 0.49 38.4 ? C02 XGE 503 A 1 HETATM 4 C C02 XGE . B . D 3 35.002 24.868 87.337 0.51 59.22 ? C02 XGE 503 A 1 HETATM 5 C C03 XGE . A . D 3 35.279 24.363 87.72 0.49 41.26 ? C03 XGE 503 A 1 HETATM 6 C C03 XGE . B . D 3 36.305 24.047 86.947 0.51 49.39 ? C03 XGE 503 A 1 HETATM 7 C C04 XGE . A . D 3 35.201 25.155 88.924 0.49 44.52 ? C04 XGE 503 A 1 HETATM 8 C C04 XGE . B . D 3 36.983 23.318 87.98 0.51 50.75 ? C04 XGE 503 A 1 HETATM 9 C C05 XGE . A . D 3 34.445 26.611 88.732 0.49 46.12 ? C05 XGE 503 A 1 HETATM 10 C C05 XGE . B . D 3 36.532 23.722 89.516 0.51 50.31 ? C05 XGE 503 A 1 HETATM 11 C C06 XGE . A . D 3 33.529 26.584 87.736 0.49 44.09 ? C06 XGE 503 A 1 HETATM 12 C C06 XGE . B . D 3 35.178 23.625 89.655 0.51 58.4 ? C06 XGE 503 A 1 HETATM 13 C C07 XGE . A . D 3 34.152 26.198 86.264 0.49 43.63 ? C07 XGE 503 A 1 HETATM 14 C C07 XGE . B . D 3 34.332 24.563 88.579 0.51 54.04 ? C07 XGE 503 A 1 HETATM 15 C C08 XGE . A . D 3 33.729 26.937 90.039 0.49 41.01 ? C08 XGE 503 A 1 HETATM 16 C C08 XGE . B . D 3 37.315 22.889 90.559 0.51 40.52 ? C08 XGE 503 A 1 HETATM 17 C C09 XGE . A . D 3 33.211 25.616 90.56 0.49 36.65 ? C09 XGE 503 A 1 HETATM 18 C C09 XGE . B . D 3 36.85 21.433 90.589 0.51 41.94 ? C09 XGE 503 A 1 HETATM 19 C C10 XGE . A . D 3 34.666 27.599 91.039 0.49 41.92 ? C10 XGE 503 A 1 HETATM 20 C C10 XGE . B . D 3 37.14 23.491 91.959 0.51 44.42 ? C10 XGE 503 A 1 HETATM 21 O O11 XGE . A . D 3 32.66 27.798 89.81 0.49 47.45 ? O11 XGE 503 A 1 HETATM 22 O O11 XGE . B . D 3 38.696 22.858 90.27 0.51 37.88 ? O11 XGE 503 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #