data_8EUK # _model_server_result.job_id 0JwIWkJO_Z9QdwFAS33edA _model_server_result.datetime_utc '2024-11-16 01:31:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8euk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 8EUK # _exptl.entry_id 8EUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8EUK _cell.length_a 68.73 _cell.length_b 68.73 _cell.length_c 457.039 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 397 A CYS 377 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 M O2 EDO . A EDO 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8EUK _atom_sites.fract_transf_matrix[1][1] 0.01455 _atom_sites.fract_transf_matrix[1][2] 0.0084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 EDO A 1 502 601 EDO EDO . D 3 EDO A 1 503 701 EDO EDO . E 3 EDO A 1 504 801 EDO EDO . F 3 EDO A 1 505 901 EDO EDO . G 3 EDO A 1 506 1001 EDO EDO . H 3 EDO A 1 507 1101 EDO EDO . I 3 EDO A 1 508 1201 EDO EDO . J 3 EDO A 1 509 1301 EDO EDO . K 3 EDO A 1 510 1401 EDO EDO . L 3 EDO A 1 511 1501 EDO EDO . M 3 EDO A 1 512 1601 EDO EDO . N 3 EDO A 1 513 1701 EDO EDO . O 4 HOH A 1 601 81 HOH HOH . O 4 HOH A 2 602 173 HOH HOH . O 4 HOH A 3 603 93 HOH HOH . O 4 HOH A 4 604 65 HOH HOH . O 4 HOH A 5 605 162 HOH HOH . O 4 HOH A 6 606 161 HOH HOH . O 4 HOH A 7 607 242 HOH HOH . O 4 HOH A 8 608 88 HOH HOH . O 4 HOH A 9 609 108 HOH HOH . O 4 HOH A 10 610 134 HOH HOH . O 4 HOH A 11 611 54 HOH HOH . O 4 HOH A 12 612 66 HOH HOH . O 4 HOH A 13 613 180 HOH HOH . O 4 HOH A 14 614 35 HOH HOH . O 4 HOH A 15 615 36 HOH HOH . O 4 HOH A 16 616 194 HOH HOH . O 4 HOH A 17 617 361 HOH HOH . O 4 HOH A 18 618 172 HOH HOH . O 4 HOH A 19 619 21 HOH HOH . O 4 HOH A 20 620 28 HOH HOH . O 4 HOH A 21 621 244 HOH HOH . O 4 HOH A 22 622 72 HOH HOH . O 4 HOH A 23 623 356 HOH HOH . O 4 HOH A 24 624 118 HOH HOH . O 4 HOH A 25 625 69 HOH HOH . O 4 HOH A 26 626 257 HOH HOH . O 4 HOH A 27 627 78 HOH HOH . O 4 HOH A 28 628 1 HOH HOH . O 4 HOH A 29 629 150 HOH HOH . O 4 HOH A 30 630 105 HOH HOH . O 4 HOH A 31 631 23 HOH HOH . O 4 HOH A 32 632 202 HOH HOH . O 4 HOH A 33 633 324 HOH HOH . O 4 HOH A 34 634 350 HOH HOH . O 4 HOH A 35 635 109 HOH HOH . O 4 HOH A 36 636 138 HOH HOH . O 4 HOH A 37 637 51 HOH HOH . O 4 HOH A 38 638 158 HOH HOH . O 4 HOH A 39 639 2 HOH HOH . O 4 HOH A 40 640 74 HOH HOH . O 4 HOH A 41 641 100 HOH HOH . O 4 HOH A 42 642 137 HOH HOH . O 4 HOH A 43 643 11 HOH HOH . O 4 HOH A 44 644 46 HOH HOH . O 4 HOH A 45 645 183 HOH HOH . O 4 HOH A 46 646 63 HOH HOH . O 4 HOH A 47 647 168 HOH HOH . O 4 HOH A 48 648 135 HOH HOH . O 4 HOH A 49 649 33 HOH HOH . O 4 HOH A 50 650 330 HOH HOH . O 4 HOH A 51 651 34 HOH HOH . O 4 HOH A 52 652 266 HOH HOH . O 4 HOH A 53 653 160 HOH HOH . O 4 HOH A 54 654 60 HOH HOH . O 4 HOH A 55 655 338 HOH HOH . O 4 HOH A 56 656 148 HOH HOH . O 4 HOH A 57 657 48 HOH HOH . O 4 HOH A 58 658 207 HOH HOH . O 4 HOH A 59 659 131 HOH HOH . O 4 HOH A 60 660 175 HOH HOH . O 4 HOH A 61 661 73 HOH HOH . O 4 HOH A 62 662 214 HOH HOH . O 4 HOH A 63 663 91 HOH HOH . O 4 HOH A 64 664 290 HOH HOH . O 4 HOH A 65 665 125 HOH HOH . O 4 HOH A 66 666 6 HOH HOH . O 4 HOH A 67 667 265 HOH HOH . O 4 HOH A 68 668 56 HOH HOH . O 4 HOH A 69 669 303 HOH HOH . O 4 HOH A 70 670 355 HOH HOH . O 4 HOH A 71 671 193 HOH HOH . O 4 HOH A 72 672 79 HOH HOH . O 4 HOH A 73 673 9 HOH HOH . O 4 HOH A 74 674 19 HOH HOH . O 4 HOH A 75 675 17 HOH HOH . O 4 HOH A 76 676 96 HOH HOH . O 4 HOH A 77 677 115 HOH HOH . O 4 HOH A 78 678 129 HOH HOH . O 4 HOH A 79 679 177 HOH HOH . O 4 HOH A 80 680 124 HOH HOH . O 4 HOH A 81 681 29 HOH HOH . O 4 HOH A 82 682 122 HOH HOH . O 4 HOH A 83 683 20 HOH HOH . O 4 HOH A 84 684 15 HOH HOH . O 4 HOH A 85 685 95 HOH HOH . O 4 HOH A 86 686 159 HOH HOH . O 4 HOH A 87 687 40 HOH HOH . O 4 HOH A 88 688 163 HOH HOH . O 4 HOH A 89 689 8 HOH HOH . O 4 HOH A 90 690 256 HOH HOH . O 4 HOH A 91 691 205 HOH HOH . O 4 HOH A 92 692 67 HOH HOH . O 4 HOH A 93 693 24 HOH HOH . O 4 HOH A 94 694 171 HOH HOH . O 4 HOH A 95 695 210 HOH HOH . O 4 HOH A 96 696 201 HOH HOH . O 4 HOH A 97 697 198 HOH HOH . O 4 HOH A 98 698 41 HOH HOH . O 4 HOH A 99 699 253 HOH HOH . O 4 HOH A 100 700 83 HOH HOH . O 4 HOH A 101 701 50 HOH HOH . O 4 HOH A 102 702 106 HOH HOH . O 4 HOH A 103 703 270 HOH HOH . O 4 HOH A 104 704 59 HOH HOH . O 4 HOH A 105 705 216 HOH HOH . O 4 HOH A 106 706 97 HOH HOH . O 4 HOH A 107 707 165 HOH HOH . O 4 HOH A 108 708 328 HOH HOH . O 4 HOH A 109 709 39 HOH HOH . O 4 HOH A 110 710 227 HOH HOH . O 4 HOH A 111 711 58 HOH HOH . O 4 HOH A 112 712 89 HOH HOH . O 4 HOH A 113 713 192 HOH HOH . O 4 HOH A 114 714 142 HOH HOH . O 4 HOH A 115 715 228 HOH HOH . O 4 HOH A 116 716 127 HOH HOH . O 4 HOH A 117 717 113 HOH HOH . O 4 HOH A 118 718 191 HOH HOH . O 4 HOH A 119 719 18 HOH HOH . O 4 HOH A 120 720 64 HOH HOH . O 4 HOH A 121 721 99 HOH HOH . O 4 HOH A 122 722 68 HOH HOH . O 4 HOH A 123 723 75 HOH HOH . O 4 HOH A 124 724 226 HOH HOH . O 4 HOH A 125 725 84 HOH HOH . O 4 HOH A 126 726 334 HOH HOH . O 4 HOH A 127 727 112 HOH HOH . O 4 HOH A 128 728 31 HOH HOH . O 4 HOH A 129 729 229 HOH HOH . O 4 HOH A 130 730 26 HOH HOH . O 4 HOH A 131 731 103 HOH HOH . O 4 HOH A 132 732 53 HOH HOH . O 4 HOH A 133 733 55 HOH HOH . O 4 HOH A 134 734 102 HOH HOH . O 4 HOH A 135 735 62 HOH HOH . O 4 HOH A 136 736 157 HOH HOH . O 4 HOH A 137 737 47 HOH HOH . O 4 HOH A 138 738 86 HOH HOH . O 4 HOH A 139 739 5 HOH HOH . O 4 HOH A 140 740 57 HOH HOH . O 4 HOH A 141 741 151 HOH HOH . O 4 HOH A 142 742 197 HOH HOH . O 4 HOH A 143 743 101 HOH HOH . O 4 HOH A 144 744 306 HOH HOH . O 4 HOH A 145 745 215 HOH HOH . O 4 HOH A 146 746 12 HOH HOH . O 4 HOH A 147 747 166 HOH HOH . O 4 HOH A 148 748 13 HOH HOH . O 4 HOH A 149 749 250 HOH HOH . O 4 HOH A 150 750 327 HOH HOH . O 4 HOH A 151 751 156 HOH HOH . O 4 HOH A 152 752 232 HOH HOH . O 4 HOH A 153 753 149 HOH HOH . O 4 HOH A 154 754 121 HOH HOH . O 4 HOH A 155 755 136 HOH HOH . O 4 HOH A 156 756 254 HOH HOH . O 4 HOH A 157 757 145 HOH HOH . O 4 HOH A 158 758 167 HOH HOH . O 4 HOH A 159 759 189 HOH HOH . O 4 HOH A 160 760 32 HOH HOH . O 4 HOH A 161 761 261 HOH HOH . O 4 HOH A 162 762 219 HOH HOH . O 4 HOH A 163 763 344 HOH HOH . O 4 HOH A 164 764 71 HOH HOH . O 4 HOH A 165 765 10 HOH HOH . O 4 HOH A 166 766 260 HOH HOH . O 4 HOH A 167 767 27 HOH HOH . O 4 HOH A 168 768 246 HOH HOH . O 4 HOH A 169 769 187 HOH HOH . O 4 HOH A 170 770 359 HOH HOH . O 4 HOH A 171 771 240 HOH HOH . O 4 HOH A 172 772 176 HOH HOH . O 4 HOH A 173 773 114 HOH HOH . O 4 HOH A 174 774 107 HOH HOH . O 4 HOH A 175 775 126 HOH HOH . O 4 HOH A 176 776 143 HOH HOH . O 4 HOH A 177 777 94 HOH HOH . O 4 HOH A 178 778 217 HOH HOH . O 4 HOH A 179 779 224 HOH HOH . O 4 HOH A 180 780 14 HOH HOH . O 4 HOH A 181 781 184 HOH HOH . O 4 HOH A 182 782 130 HOH HOH . O 4 HOH A 183 783 52 HOH HOH . O 4 HOH A 184 784 358 HOH HOH . O 4 HOH A 185 785 262 HOH HOH . O 4 HOH A 186 786 92 HOH HOH . O 4 HOH A 187 787 310 HOH HOH . O 4 HOH A 188 788 285 HOH HOH . O 4 HOH A 189 789 104 HOH HOH . O 4 HOH A 190 790 76 HOH HOH . O 4 HOH A 191 791 7 HOH HOH . O 4 HOH A 192 792 30 HOH HOH . O 4 HOH A 193 793 222 HOH HOH . O 4 HOH A 194 794 16 HOH HOH . O 4 HOH A 195 795 82 HOH HOH . O 4 HOH A 196 796 116 HOH HOH . O 4 HOH A 197 797 44 HOH HOH . O 4 HOH A 198 798 307 HOH HOH . O 4 HOH A 199 799 43 HOH HOH . O 4 HOH A 200 800 153 HOH HOH . O 4 HOH A 201 801 297 HOH HOH . O 4 HOH A 202 802 61 HOH HOH . O 4 HOH A 203 803 37 HOH HOH . O 4 HOH A 204 804 341 HOH HOH . O 4 HOH A 205 805 182 HOH HOH . O 4 HOH A 206 806 185 HOH HOH . O 4 HOH A 207 807 267 HOH HOH . O 4 HOH A 208 808 49 HOH HOH . O 4 HOH A 209 809 120 HOH HOH . O 4 HOH A 210 810 141 HOH HOH . O 4 HOH A 211 811 25 HOH HOH . O 4 HOH A 212 812 299 HOH HOH . O 4 HOH A 213 813 123 HOH HOH . O 4 HOH A 214 814 169 HOH HOH . O 4 HOH A 215 815 346 HOH HOH . O 4 HOH A 216 816 38 HOH HOH . O 4 HOH A 217 817 243 HOH HOH . O 4 HOH A 218 818 117 HOH HOH . O 4 HOH A 219 819 248 HOH HOH . O 4 HOH A 220 820 272 HOH HOH . O 4 HOH A 221 821 195 HOH HOH . O 4 HOH A 222 822 85 HOH HOH . O 4 HOH A 223 823 132 HOH HOH . O 4 HOH A 224 824 347 HOH HOH . O 4 HOH A 225 825 311 HOH HOH . O 4 HOH A 226 826 152 HOH HOH . O 4 HOH A 227 827 203 HOH HOH . O 4 HOH A 228 828 90 HOH HOH . O 4 HOH A 229 829 111 HOH HOH . O 4 HOH A 230 830 360 HOH HOH . O 4 HOH A 231 831 213 HOH HOH . O 4 HOH A 232 832 357 HOH HOH . O 4 HOH A 233 833 140 HOH HOH . O 4 HOH A 234 834 179 HOH HOH . O 4 HOH A 235 835 196 HOH HOH . O 4 HOH A 236 836 241 HOH HOH . O 4 HOH A 237 837 316 HOH HOH . O 4 HOH A 238 838 251 HOH HOH . O 4 HOH A 239 839 333 HOH HOH . O 4 HOH A 240 840 128 HOH HOH . O 4 HOH A 241 841 351 HOH HOH . O 4 HOH A 242 842 280 HOH HOH . O 4 HOH A 243 843 289 HOH HOH . O 4 HOH A 244 844 255 HOH HOH . O 4 HOH A 245 845 199 HOH HOH . O 4 HOH A 246 846 155 HOH HOH . O 4 HOH A 247 847 288 HOH HOH . O 4 HOH A 248 848 287 HOH HOH . O 4 HOH A 249 849 225 HOH HOH . O 4 HOH A 250 850 234 HOH HOH . O 4 HOH A 251 851 283 HOH HOH . O 4 HOH A 252 852 87 HOH HOH . O 4 HOH A 253 853 301 HOH HOH . O 4 HOH A 254 854 295 HOH HOH . O 4 HOH A 255 855 200 HOH HOH . O 4 HOH A 256 856 313 HOH HOH . O 4 HOH A 257 857 331 HOH HOH . O 4 HOH A 258 858 238 HOH HOH . O 4 HOH A 259 859 278 HOH HOH . O 4 HOH A 260 860 252 HOH HOH . O 4 HOH A 261 861 302 HOH HOH . O 4 HOH A 262 862 220 HOH HOH . O 4 HOH A 263 863 336 HOH HOH . O 4 HOH A 264 864 218 HOH HOH . O 4 HOH A 265 865 317 HOH HOH . O 4 HOH A 266 866 332 HOH HOH . O 4 HOH A 267 867 178 HOH HOH . O 4 HOH A 268 868 119 HOH HOH . O 4 HOH A 269 869 174 HOH HOH . O 4 HOH A 270 870 237 HOH HOH . O 4 HOH A 271 871 296 HOH HOH . O 4 HOH A 272 872 110 HOH HOH . O 4 HOH A 273 873 77 HOH HOH . O 4 HOH A 274 874 208 HOH HOH . O 4 HOH A 275 875 147 HOH HOH . O 4 HOH A 276 876 154 HOH HOH . O 4 HOH A 277 877 323 HOH HOH . O 4 HOH A 278 878 212 HOH HOH . O 4 HOH A 279 879 339 HOH HOH . O 4 HOH A 280 880 263 HOH HOH . O 4 HOH A 281 881 312 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 33.7 1.971 90.571 1 31.86 ? C1 EDO 507 A 1 HETATM 2 O O1 EDO . . . H 3 35.113 2.05 90.446 1 34.39 ? O1 EDO 507 A 1 HETATM 3 C C2 EDO . . . H 3 32.977 2.448 89.365 1 43.41 ? C2 EDO 507 A 1 HETATM 4 O O2 EDO . . . H 3 32.576 1.397 88.497 1 38.02 ? O2 EDO 507 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #